Wall clock time and date at job start Tue Mar 31 2020 22:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47130 * 2 1 4 4 C 1.53002 * 109.47287 * 239.99867 * 2 1 3 5 5 O 1.42904 * 109.46890 * 120.00044 * 2 1 3 6 6 C 1.42897 * 114.00175 * 59.99846 * 5 2 1 7 7 C 1.50704 * 109.47053 * 179.97438 * 6 5 2 8 8 O 1.21279 * 119.99822 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99745 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99968 * 180.02562 * 9 7 6 11 11 H 1.09003 * 113.33980 * 28.42710 * 10 9 7 12 12 C 1.50000 * 114.12624 * 255.49768 * 10 9 7 13 13 H 1.09004 * 111.89833 * 322.37053 * 12 10 9 14 14 C 1.51208 * 126.16266 * 104.79924 * 12 10 9 15 15 C 1.54093 * 106.19410 * 161.40732 * 14 12 10 16 16 C 1.52503 * 112.68164 * 304.56005 * 15 14 12 17 17 N 1.48413 * 111.85832 * 46.78962 * 16 15 14 18 18 C 1.36935 * 123.16422 * 128.13623 * 17 16 15 19 19 H 1.07994 * 120.00538 * 313.80894 * 18 17 16 20 20 C 1.38811 * 119.99679 * 133.80644 * 18 17 16 21 21 N 1.31618 * 120.00400 * 336.54247 * 20 18 17 22 22 Si 1.86805 * 120.00060 * 156.53992 * 20 18 17 23 23 H 1.48499 * 109.47287 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.47007 * 59.99889 * 22 20 18 25 25 H 1.48504 * 109.47016 * 300.00368 * 22 20 18 26 26 C 1.45375 * 113.66374 * 308.40529 * 17 16 15 27 27 H 1.09003 * 112.09218 * 300.00888 * 26 17 16 28 28 C 1.49965 * 126.68251 * 155.73122 * 26 17 16 29 29 C 1.53003 * 114.08081 * 334.30415 * 28 26 17 30 30 C 1.52995 * 114.08349 * 106.55161 * 28 26 17 31 31 H 1.09003 * 109.47021 * 299.99828 * 1 2 3 32 32 H 1.09001 * 109.47346 * 59.99933 * 1 2 3 33 33 H 1.09003 * 109.47091 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47218 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.46927 * 299.99871 * 3 2 1 36 36 H 1.09003 * 109.47028 * 60.00176 * 3 2 1 37 37 H 1.08998 * 109.46832 * 300.00442 * 4 2 1 38 38 H 1.09001 * 109.46764 * 59.99843 * 4 2 1 39 39 H 1.08999 * 109.47062 * 180.02562 * 4 2 1 40 40 H 1.09005 * 109.46773 * 59.99927 * 6 5 2 41 41 H 1.08995 * 109.47422 * 300.00196 * 6 5 2 42 42 H 0.97003 * 120.00062 * 0.02562 * 9 7 6 43 43 H 1.09003 * 110.09828 * 42.24341 * 14 12 10 44 44 H 1.08991 * 110.10346 * 280.57845 * 14 12 10 45 45 H 1.09012 * 108.83968 * 183.73925 * 15 14 12 46 46 H 1.09000 * 108.76091 * 65.33217 * 15 14 12 47 47 H 1.08998 * 109.00378 * 286.17820 * 16 15 14 48 48 H 1.08995 * 109.00336 * 167.39992 * 16 15 14 49 49 H 0.97006 * 119.99961 * 354.16022 * 21 20 18 50 50 H 1.08995 * 109.47148 * 54.51776 * 29 28 26 51 51 H 1.09000 * 109.47270 * 174.51788 * 29 28 26 52 52 H 1.08997 * 109.47199 * 294.51704 * 29 28 26 53 53 H 1.08992 * 109.47586 * 60.00441 * 30 28 26 54 54 H 1.09011 * 109.46813 * 180.02562 * 30 28 26 55 55 H 1.08999 * 109.47449 * 299.99967 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0063 -0.6737 1.1668 6 6 1.5846 -2.0355 1.2646 7 6 2.1420 -2.6447 2.5253 8 8 2.8319 -1.9781 3.2672 9 7 1.8736 -3.9303 2.8282 10 6 2.4150 -4.5224 4.0540 11 1 2.5755 -3.7955 4.8503 12 6 3.5720 -5.4498 3.8279 13 1 3.4468 -6.0426 2.9217 14 6 5.0266 -5.1464 4.1080 15 6 5.7447 -6.5082 4.1738 16 6 5.1192 -7.4542 5.1935 17 7 3.6405 -7.4961 5.0740 18 6 2.9312 -8.6616 4.9574 19 1 3.2561 -9.4247 4.2658 20 6 1.7944 -8.8622 5.7283 21 7 1.6405 -8.2042 6.8578 22 14 0.4827 -10.0661 5.1627 23 1 -0.6210 -10.0982 6.1556 24 1 1.0757 -11.4218 5.0383 25 1 -0.0489 -9.6356 3.8446 26 6 3.0167 -6.1831 5.0861 27 1 3.2260 -5.6383 6.0067 28 6 1.6849 -5.8186 4.5010 29 6 1.2390 -6.7245 3.3514 30 6 0.5890 -5.5827 5.5422 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6766 -1.7489 -1.2492 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7217 -1.2490 40 1 1.9491 -2.5916 0.4008 41 1 0.4958 -2.0778 1.2908 42 1 1.3221 -4.4635 2.2345 43 1 5.1239 -4.6253 5.0604 44 1 5.4447 -4.5410 3.3039 45 1 6.7886 -6.3432 4.4408 46 1 5.7031 -6.9744 3.1894 47 1 5.3849 -7.1207 6.1966 48 1 5.5165 -8.4571 5.0375 49 1 2.3574 -7.6440 7.1942 50 1 1.2565 -7.7636 3.6799 51 1 0.2268 -6.4562 3.0489 52 1 1.9160 -6.5992 2.5064 53 1 0.8838 -4.7664 6.2015 54 1 -0.3421 -5.3243 5.0375 55 1 0.4441 -6.4896 6.1291 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656650695.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:07 Heat of formation + Delta-G solvation = -44.915648 kcal Electronic energy + Delta-G solvation = -32145.375226 eV Core-core repulsion = 28183.609852 eV Total energy + Delta-G solvation = -3961.765374 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -42.50490 -40.63380 -39.34464 -36.90620 -35.26397 -34.46222 -34.28895 -31.95117 -30.87612 -29.51684 -28.52090 -28.28194 -28.01075 -27.06650 -25.80725 -23.95381 -22.47898 -21.44638 -20.95609 -20.87371 -20.14509 -18.76207 -18.17625 -17.52943 -17.00800 -16.82890 -16.26906 -16.00056 -15.67303 -15.56155 -15.47841 -15.14219 -15.02630 -14.69316 -14.52552 -14.27641 -14.18061 -14.09884 -14.00576 -13.54290 -13.23829 -13.12165 -13.05826 -12.86081 -12.74596 -12.66435 -12.64770 -12.55099 -12.45320 -12.24870 -12.20270 -11.87977 -11.72413 -11.68980 -11.57161 -11.56812 -11.38409 -11.16794 -10.74935 -10.57297 -10.41534 -10.13802 -9.86165 -8.67782 -7.96909 -5.43934 1.58928 1.62112 1.65501 1.84275 1.84955 2.66718 3.00089 3.31183 3.34539 3.47616 3.65823 3.71948 3.87896 3.91163 3.98614 4.08144 4.10226 4.12646 4.16872 4.27893 4.33846 4.45742 4.51540 4.60177 4.63454 4.67255 4.68028 4.69081 4.82383 4.82414 4.86783 4.94544 4.95230 4.95491 4.99411 5.02837 5.11267 5.16654 5.17256 5.17698 5.22602 5.28400 5.34617 5.38014 5.39432 5.51717 5.61387 5.72681 5.81941 6.11036 6.21146 6.52940 6.61690 7.17850 7.26885 7.82470 8.49729 9.08208 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016667 B = 0.003094 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.571807 B = 9048.037097 C = 9894.513508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.094 3.906 3 C -0.138 4.138 4 C -0.178 4.178 5 O -0.386 6.386 6 C 0.045 3.955 7 C 0.508 3.492 8 O -0.577 6.577 9 N -0.697 5.697 10 C 0.154 3.846 11 H 0.087 0.913 12 C -0.155 4.155 13 H 0.094 0.906 14 C -0.088 4.088 15 C -0.114 4.114 16 C 0.137 3.863 17 N -0.589 5.589 18 C -0.345 4.345 19 H 0.031 0.969 20 C -0.035 4.035 21 N -0.911 5.911 22 Si 1.086 2.914 23 H -0.294 1.294 24 H -0.285 1.285 25 H -0.261 1.261 26 C 0.160 3.840 27 H 0.015 0.985 28 C -0.045 4.045 29 C -0.132 4.132 30 C -0.145 4.145 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.414 0.586 43 H 0.043 0.957 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.000 1.000 48 H 0.048 0.952 49 H 0.251 0.749 50 H 0.075 0.925 51 H 0.064 0.936 52 H 0.061 0.939 53 H 0.034 0.966 54 H 0.060 0.940 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.573 12.797 -17.809 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.055 3.945 3 C -0.195 4.195 4 C -0.235 4.235 5 O -0.305 6.305 6 C -0.034 4.034 7 C 0.295 3.705 8 O -0.455 6.455 9 N -0.350 5.350 10 C 0.048 3.952 11 H 0.105 0.895 12 C -0.176 4.176 13 H 0.112 0.888 14 C -0.125 4.125 15 C -0.153 4.153 16 C 0.013 3.987 17 N -0.313 5.313 18 C -0.475 4.475 19 H 0.048 0.952 20 C -0.236 4.236 21 N -0.549 5.549 22 Si 0.911 3.089 23 H -0.220 1.220 24 H -0.212 1.212 25 H -0.186 1.186 26 C 0.052 3.948 27 H 0.032 0.968 28 C -0.046 4.046 29 C -0.188 4.188 30 C -0.203 4.203 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.074 0.926 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.252 0.748 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.075 0.925 47 H 0.018 0.982 48 H 0.066 0.934 49 H 0.061 0.939 50 H 0.094 0.906 51 H 0.083 0.917 52 H 0.080 0.920 53 H 0.053 0.947 54 H 0.079 0.921 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.462 12.690 -16.799 21.521 hybrid contribution 1.622 0.077 0.198 1.636 sum -2.840 12.767 -16.601 21.135 Atomic orbital electron populations 1.22444 0.94272 1.03308 1.03492 1.21873 0.94368 0.93487 0.84749 1.21793 1.01511 0.93028 1.03173 1.22443 1.01779 1.01526 0.97760 1.88080 1.74948 1.22678 1.44841 1.22284 1.00948 0.85007 0.95167 1.20995 0.80067 0.81765 0.87694 1.90688 1.39898 1.62205 1.52753 1.45730 1.53178 1.11495 1.24578 1.21953 0.94427 0.91803 0.87016 0.89548 1.23264 0.94222 0.98883 1.01245 0.88833 1.21080 0.94958 0.96448 1.00052 1.21750 0.98901 0.95079 0.99599 1.21153 0.84932 0.97454 0.95202 1.43942 1.00437 1.01000 1.85942 1.19580 1.11371 0.96851 1.19664 0.95154 1.26946 1.02781 1.01406 0.92492 1.70797 1.36066 1.30460 1.17545 0.83340 0.74686 0.74538 0.76345 1.22047 1.21182 1.18620 1.21065 0.95073 0.86324 0.92328 0.96774 1.21589 0.93707 0.92830 0.96468 1.21774 1.00000 1.01390 0.95659 1.21907 0.97695 1.02198 0.98465 0.92623 0.89362 0.91307 0.92773 0.88528 0.92763 0.91333 0.89359 0.92647 0.87727 0.87636 0.74811 0.93783 0.92332 0.90696 0.92490 0.98199 0.93385 0.93934 0.90649 0.91684 0.91997 0.94675 0.92057 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 8.25 71.98 0.59 -1.62 16 2 C 0.09 1.54 1.14 -10.79 -0.01 1.53 16 3 C -0.14 -2.11 8.84 71.98 0.64 -1.47 16 4 C -0.18 -2.22 8.25 71.98 0.59 -1.63 16 5 O -0.39 -9.70 9.52 -129.94 -1.24 -10.93 16 6 C 0.05 0.94 5.62 71.24 0.40 1.34 16 7 C 0.51 15.23 7.91 87.66 0.69 15.93 16 8 O -0.58 -23.40 16.18 16.01 0.26 -23.14 16 9 N -0.70 -19.37 5.30 -456.84 -2.42 -21.79 16 10 C 0.15 5.42 3.40 42.03 0.14 5.56 16 11 H 0.09 3.49 7.53 -2.39 -0.02 3.47 16 12 C -0.15 -5.74 2.87 -15.00 -0.04 -5.78 16 13 H 0.09 3.49 5.92 -2.38 -0.01 3.47 16 14 C -0.09 -3.13 6.12 30.38 0.19 -2.95 16 15 C -0.11 -3.99 5.90 30.80 0.18 -3.81 16 16 C 0.14 5.86 6.47 85.85 0.56 6.42 16 17 N -0.59 -28.13 2.46 -692.52 -1.70 -29.83 16 18 C -0.35 -17.84 7.62 84.03 0.64 -17.20 16 19 H 0.03 1.64 7.93 -2.91 -0.02 1.62 16 20 C -0.04 -1.83 3.97 84.86 0.34 -1.49 16 21 N -0.91 -51.18 11.12 21.65 0.24 -50.94 16 22 Si 1.09 46.79 28.64 68.60 1.96 48.76 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.26 -10.07 7.00 99.48 0.70 -9.37 16 26 C 0.16 7.01 1.70 42.42 0.07 7.08 16 27 H 0.01 0.72 7.98 -2.39 -0.02 0.70 16 28 C -0.04 -1.70 1.06 -56.00 -0.06 -1.76 16 29 C -0.13 -4.61 7.56 71.98 0.54 -4.07 16 30 C -0.15 -5.77 9.26 71.98 0.67 -5.10 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.73 6.54 -2.39 -0.02 0.72 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 0.74 6.54 -2.39 -0.02 0.72 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.11 1.61 6.42 -2.38 -0.02 1.60 16 41 H 0.11 1.61 6.42 -2.39 -0.02 1.60 16 42 H 0.41 8.89 7.44 -92.71 -0.69 8.20 16 43 H 0.04 1.65 8.06 -2.39 -0.02 1.63 16 44 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 46 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 48 H 0.05 2.05 8.01 -2.39 -0.02 2.04 16 49 H 0.25 14.95 7.64 -92.70 -0.71 14.24 16 50 H 0.07 3.15 3.50 -2.39 -0.01 3.15 16 51 H 0.06 1.87 8.05 -2.39 -0.02 1.85 16 52 H 0.06 1.97 5.83 -2.39 -0.01 1.95 16 53 H 0.03 1.37 8.03 -2.39 -0.02 1.35 16 54 H 0.06 2.07 8.08 -2.38 -0.02 2.05 16 55 H 0.07 3.37 5.71 -2.39 -0.01 3.36 16 Total: -1.00 -67.86 405.55 3.46 -64.40 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.23 Total: 32.52 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 6.13 Total: -9.03 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -3.88 Total: -102.57 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.98 Total: -34.07 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.96 Total: 48.76 kcal Total: -67.86 3.46 -64.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656650695.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.483 kcal (2) G-P(sol) polarization free energy of solvation -67.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds