Wall clock time and date at job start Tue Mar 31 2020 22:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36938 * 119.99760 * 2 1 4 4 H 1.08002 * 119.99717 * 178.03795 * 3 2 1 5 5 C 1.38815 * 120.00116 * 358.03211 * 3 2 1 6 6 N 1.31618 * 119.99589 * 33.37087 * 5 3 2 7 7 Si 1.86795 * 120.00052 * 213.36010 * 5 3 2 8 8 H 1.48507 * 109.46829 * 95.00344 * 7 5 3 9 9 H 1.48495 * 109.47345 * 215.00166 * 7 5 3 10 10 H 1.48503 * 109.47245 * 335.00570 * 7 5 3 11 11 C 1.46503 * 120.00063 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47129 * 270.00112 * 11 2 1 13 13 C 1.52992 * 109.47236 * 180.02562 * 12 11 2 14 14 C 1.53035 * 109.46423 * 174.99953 * 13 12 11 15 15 C 1.53190 * 109.31604 * 181.38666 * 14 13 12 16 16 N 1.46929 * 108.77539 * 305.36346 * 15 14 13 17 17 C 1.34770 * 120.63146 * 233.58801 * 16 15 14 18 18 O 1.21283 * 120.00119 * 186.24840 * 17 16 15 19 19 C 1.50710 * 120.00291 * 6.24227 * 17 16 15 20 20 C 1.52998 * 109.54076 * 297.68645 * 19 17 16 21 21 C 1.53181 * 109.61371 * 57.90306 * 19 17 16 22 22 C 1.53088 * 109.15997 * 62.93172 * 21 19 17 23 23 O 1.42906 * 109.41669 * 57.61140 * 22 21 19 24 24 C 1.42906 * 114.09483 * 298.83652 * 23 22 21 25 25 C 1.53090 * 109.41347 * 61.16031 * 24 23 22 26 26 C 1.46924 * 118.73678 * 53.86018 * 16 15 14 27 27 C 1.53048 * 109.46154 * 295.06928 * 13 12 11 28 28 H 1.08998 * 109.47167 * 273.50118 * 1 2 3 29 29 H 1.08992 * 109.47111 * 33.49921 * 1 2 3 30 30 H 1.09000 * 109.46862 * 153.50101 * 1 2 3 31 31 H 0.97002 * 119.99479 * 179.97438 * 6 5 3 32 32 H 1.08996 * 109.46703 * 149.99955 * 11 2 1 33 33 H 1.09002 * 109.46829 * 30.00063 * 11 2 1 34 34 H 1.09001 * 109.46956 * 59.99787 * 12 11 2 35 35 H 1.09004 * 109.46785 * 300.00338 * 12 11 2 36 36 H 1.09009 * 109.45219 * 55.03151 * 13 12 11 37 37 H 1.09003 * 109.50127 * 61.43191 * 14 13 12 38 38 H 1.09004 * 109.50024 * 301.33780 * 14 13 12 39 39 H 1.09007 * 109.58694 * 185.58107 * 15 14 13 40 40 H 1.08999 * 109.59082 * 65.15421 * 15 14 13 41 41 H 1.08999 * 109.46961 * 291.16880 * 20 19 17 42 42 H 1.08995 * 109.47797 * 51.17072 * 20 19 17 43 43 H 1.08996 * 109.46965 * 171.17203 * 20 19 17 44 44 H 1.08998 * 109.51942 * 182.83823 * 21 19 17 45 45 H 1.08999 * 109.52117 * 303.02585 * 21 19 17 46 46 H 1.09000 * 109.48296 * 297.62451 * 22 21 19 47 47 H 1.09000 * 109.48063 * 177.58964 * 22 21 19 48 48 H 1.09000 * 109.48267 * 301.17714 * 24 23 22 49 49 H 1.08995 * 109.48736 * 181.14875 * 24 23 22 50 50 H 1.09004 * 109.52356 * 182.48767 * 25 24 23 51 51 H 1.08998 * 109.52375 * 62.29570 * 25 24 23 52 52 H 1.08999 * 109.58541 * 65.92811 * 26 16 15 53 53 H 1.08995 * 109.58439 * 186.35176 * 26 16 15 54 54 H 1.09003 * 109.49218 * 298.56282 * 27 13 12 55 55 H 1.08997 * 109.49560 * 58.65584 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2292 1.1862 0.0320 5 6 1.4562 2.3877 -0.0413 6 7 0.2846 2.4921 0.5494 7 14 2.1858 3.8569 -0.9349 8 1 1.6517 3.9091 -2.3196 9 1 1.8214 5.1043 -0.2164 10 1 3.6643 3.7251 -0.9792 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 6 3.2181 -3.0344 1.4439 14 6 3.5819 -3.4124 2.8815 15 6 4.3781 -4.7211 2.8752 16 7 3.6018 -5.7436 2.1605 17 6 3.3337 -6.9310 2.7388 18 8 2.7916 -7.8080 2.1001 19 6 3.7077 -7.1693 4.1792 20 6 5.2260 -7.0671 4.3374 21 6 3.0284 -6.1219 5.0669 22 6 1.5096 -6.2835 4.9623 23 8 1.1459 -7.6118 5.3436 24 6 1.7137 -8.6316 4.5191 25 6 3.2407 -8.5644 4.6058 26 6 3.1286 -5.4491 0.8011 27 6 2.3416 -4.1302 0.8327 28 1 -0.3633 0.0628 1.0257 29 1 -0.3633 0.8569 -0.5671 30 1 -0.3633 -0.9197 -0.4585 31 1 -0.1998 3.3320 0.5209 32 1 3.1499 -1.1386 -0.5133 33 1 1.6084 -2.0286 -0.5130 34 1 1.5001 -1.8399 1.9571 35 1 3.0416 -0.9498 1.9567 36 1 4.1291 -2.9275 0.8549 37 1 2.6706 -3.5438 3.4649 38 1 4.1867 -2.6208 3.3239 39 1 4.5543 -5.0466 3.9006 40 1 5.3314 -4.5666 2.3698 41 1 5.7011 -7.9101 3.8357 42 1 5.5758 -6.1356 3.8925 43 1 5.4828 -7.0828 5.3965 44 1 3.3396 -6.2645 6.1017 45 1 3.3122 -5.1234 4.7344 46 1 1.1945 -6.1009 3.9350 47 1 1.0216 -5.5687 5.6249 48 1 1.4013 -8.4798 3.4860 49 1 1.3728 -9.6084 4.8622 50 1 3.6764 -9.3127 3.9436 51 1 3.5561 -8.7563 5.6314 52 1 3.9820 -5.3527 0.1300 53 1 2.4801 -6.2550 0.4575 54 1 1.4420 -4.2547 1.4354 55 1 2.0636 -3.8493 -0.1831 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667421651.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:34 Heat of formation + Delta-G solvation = -70.996221 kcal Electronic energy + Delta-G solvation = -31772.928729 eV Core-core repulsion = 27810.032416 eV Total energy + Delta-G solvation = -3962.896313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.35160 -39.85404 -38.74337 -37.56157 -36.27218 -35.03914 -33.16608 -32.37912 -31.71036 -30.29402 -29.35477 -27.96277 -26.81214 -25.04311 -24.78867 -24.17011 -23.67890 -22.59553 -21.78691 -20.99056 -19.71335 -18.71771 -17.66831 -17.48861 -17.04132 -16.81757 -16.53684 -16.51835 -15.99562 -15.70844 -15.57313 -15.36621 -15.25220 -14.95825 -14.80351 -14.50161 -14.33714 -14.12276 -13.73352 -13.56633 -13.38024 -13.26645 -13.04732 -12.96650 -12.92769 -12.78688 -12.74649 -12.58695 -12.41257 -12.30284 -12.14976 -12.08394 -11.94482 -11.68441 -11.60910 -11.51066 -11.45775 -11.27791 -11.12968 -10.53788 -10.37702 -10.32600 -9.64873 -8.94883 -7.94759 -5.09426 1.46013 1.50955 1.55268 1.58110 1.98489 2.53350 2.89790 3.18615 3.31370 3.51109 3.64334 3.73154 3.78989 3.83216 3.93448 3.98930 4.04874 4.12036 4.23065 4.31473 4.40454 4.42874 4.47398 4.53433 4.57905 4.60781 4.64796 4.71456 4.75030 4.75838 4.80724 4.82548 4.84420 4.90543 4.92570 4.99390 5.04577 5.05760 5.07584 5.10879 5.17808 5.18552 5.27922 5.29781 5.36187 5.52530 5.56922 5.59310 5.64890 5.73255 6.19090 6.26541 6.39970 7.12259 7.12720 7.91205 8.32338 9.15175 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022195 B = 0.002373 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.245519 B =11797.173833 C =12027.244200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.625 5.625 3 C -0.262 4.262 4 H 0.079 0.921 5 C -0.052 4.052 6 N -0.925 5.925 7 Si 0.946 3.054 8 H -0.291 1.291 9 H -0.300 1.300 10 H -0.267 1.267 11 C 0.149 3.851 12 C -0.118 4.118 13 C -0.074 4.074 14 C -0.129 4.129 15 C 0.085 3.915 16 N -0.604 5.604 17 C 0.519 3.481 18 O -0.580 6.580 19 C -0.080 4.080 20 C -0.155 4.155 21 C -0.152 4.152 22 C 0.054 3.946 23 O -0.398 6.398 24 C 0.047 3.953 25 C -0.123 4.123 26 C 0.114 3.886 27 C -0.121 4.121 28 H -0.014 1.014 29 H 0.039 0.961 30 H 0.028 0.972 31 H 0.249 0.751 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.034 0.966 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.126 0.874 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.025 0.975 47 H 0.107 0.893 48 H 0.046 0.954 49 H 0.102 0.898 50 H 0.075 0.925 51 H 0.096 0.904 52 H 0.082 0.918 53 H 0.072 0.928 54 H 0.049 0.951 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.635 -21.999 9.871 26.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.349 5.349 3 C -0.391 4.391 4 H 0.097 0.903 5 C -0.247 4.247 6 N -0.572 5.572 7 Si 0.775 3.225 8 H -0.219 1.219 9 H -0.227 1.227 10 H -0.192 1.192 11 C 0.024 3.976 12 C -0.158 4.158 13 C -0.093 4.093 14 C -0.168 4.168 15 C -0.036 4.036 16 N -0.336 5.336 17 C 0.308 3.692 18 O -0.461 6.461 19 C -0.084 4.084 20 C -0.211 4.211 21 C -0.190 4.190 22 C -0.023 4.023 23 O -0.318 6.318 24 C -0.030 4.030 25 C -0.161 4.161 26 C -0.008 4.008 27 C -0.159 4.159 28 H 0.004 0.996 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.144 0.856 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.044 0.956 47 H 0.126 0.874 48 H 0.064 0.936 49 H 0.121 0.879 50 H 0.094 0.906 51 H 0.114 0.886 52 H 0.100 0.900 53 H 0.090 0.910 54 H 0.067 0.933 55 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.142 -22.370 9.678 26.800 hybrid contribution -0.300 1.249 -0.825 1.527 sum 10.842 -21.120 8.854 25.338 Atomic orbital electron populations 1.20768 0.83153 0.97192 0.96913 1.44459 1.02105 1.02277 1.86049 1.19516 0.91244 0.84522 1.43792 0.90268 1.25390 0.97611 0.99971 1.01718 1.70439 1.18103 1.25898 1.42792 0.85548 0.78605 0.79238 0.79148 1.21881 1.22710 1.19169 1.21047 0.95557 0.85905 0.95104 1.22045 0.98747 0.96060 0.98931 1.21037 0.98454 0.92952 0.96871 1.22015 1.00779 0.97395 0.96564 1.22638 0.94488 0.86839 0.99638 1.48172 1.53981 1.15038 1.16410 1.21040 0.77319 0.81267 0.89561 1.90624 1.45068 1.44333 1.66037 1.20902 0.99379 0.97865 0.90216 1.22252 0.90156 1.03901 1.04828 1.22655 0.94990 0.99654 1.01652 1.22655 0.95695 0.84409 0.99505 1.87884 1.72410 1.15285 1.56172 1.22824 0.93538 0.91723 0.94871 1.22007 0.95968 0.95147 1.03012 1.21669 0.99017 0.96924 0.83210 1.21998 0.98037 0.94022 1.01885 0.99606 0.94268 0.95300 0.94228 0.93267 0.92732 0.94737 0.93944 0.90109 0.92212 0.89356 0.85619 0.89276 0.91972 0.89647 0.88929 0.87718 0.87919 0.95627 0.87449 0.93619 0.87945 0.90614 0.88571 0.90009 0.90990 0.93260 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.30 9.25 127.77 1.18 9.48 16 2 N -0.63 -31.06 2.93 -726.94 -2.13 -33.19 16 3 C -0.26 -14.24 9.65 84.03 0.81 -13.43 16 4 H 0.08 4.17 8.01 -2.91 -0.02 4.15 16 5 C -0.05 -2.91 4.84 84.86 0.41 -2.50 16 6 N -0.93 -55.02 10.80 21.65 0.23 -54.79 16 7 Si 0.95 44.68 29.66 68.60 2.03 46.71 16 8 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 9 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 11 C 0.15 5.64 5.47 86.38 0.47 6.11 16 12 C -0.12 -3.83 5.01 30.59 0.15 -3.68 16 13 C -0.07 -1.66 2.15 -10.77 -0.02 -1.69 16 14 C -0.13 -2.27 5.02 30.67 0.15 -2.12 16 15 C 0.08 1.14 4.06 86.36 0.35 1.49 16 16 N -0.60 -11.43 2.96 -818.07 -2.42 -13.85 16 17 C 0.52 11.26 5.12 87.66 0.45 11.71 16 18 O -0.58 -17.02 13.38 -3.04 -0.04 -17.06 16 19 C -0.08 -1.23 0.50 -52.80 -0.03 -1.25 16 20 C -0.15 -1.47 8.10 71.98 0.58 -0.88 16 21 C -0.15 -2.09 4.58 30.68 0.14 -1.95 16 22 C 0.05 1.06 6.62 72.01 0.48 1.54 16 23 O -0.40 -9.15 10.77 -148.98 -1.60 -10.76 16 24 C 0.05 0.98 6.55 72.01 0.47 1.45 16 25 C -0.12 -2.01 4.55 30.68 0.14 -1.87 16 26 C 0.11 2.37 6.44 86.51 0.56 2.93 16 27 C -0.12 -2.73 5.16 30.82 0.16 -2.57 16 28 H -0.01 -0.78 8.07 -2.39 -0.02 -0.80 16 29 H 0.04 2.17 6.10 -2.39 -0.01 2.15 16 30 H 0.03 1.24 7.85 -2.39 -0.02 1.22 16 31 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 32 H 0.05 1.80 8.04 -2.39 -0.02 1.78 16 33 H 0.05 1.88 6.26 -2.39 -0.01 1.86 16 34 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.06 1.16 7.55 -2.39 -0.02 1.14 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 39 H 0.13 1.20 2.68 -2.38 -0.01 1.19 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 42 H 0.09 0.66 4.70 -2.39 -0.01 0.65 16 43 H 0.09 0.52 8.12 -2.39 -0.02 0.51 16 44 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.10 1.22 4.00 -2.39 -0.01 1.21 16 46 H 0.03 0.61 7.38 -2.39 -0.02 0.60 16 47 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.05 1.21 5.90 -2.39 -0.01 1.20 16 49 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.08 1.30 7.99 -2.38 -0.02 1.28 16 51 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 52 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 53 H 0.07 1.76 7.04 -2.39 -0.02 1.75 16 54 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 55 H 0.08 1.79 6.50 -2.39 -0.02 1.78 16 Total: -1.00 -70.34 397.10 3.39 -66.94 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.86 Total: 13.22 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 6.46 Total: 2.76 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -4.32 Total: -101.83 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -1.64 Total: -27.81 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -70.34 3.39 -66.94 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667421651.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.053 kcal (2) G-P(sol) polarization free energy of solvation -70.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds