Wall clock time and date at job start Tue Mar 31 2020 20:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99925 * 2 1 4 4 H 1.48505 * 109.47110 * 274.66415 * 3 2 1 5 5 H 1.48498 * 109.47177 * 34.66219 * 3 2 1 6 6 H 1.48503 * 109.47371 * 154.66442 * 3 2 1 7 7 C 1.38813 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99705 * 29.83592 * 7 2 1 9 9 N 1.36934 * 120.00108 * 209.84932 * 7 2 1 10 10 C 1.46501 * 120.00490 * 39.15130 * 9 7 2 11 11 C 1.52998 * 109.47110 * 95.97586 * 10 9 7 12 12 N 1.46500 * 109.46890 * 185.38416 * 11 10 9 13 13 C 1.34777 * 119.99913 * 180.02562 * 12 11 10 14 14 O 1.21284 * 119.99792 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.00257 * 180.02562 * 13 12 11 16 16 H 1.09000 * 109.48245 * 54.99602 * 15 13 12 17 17 C 1.53096 * 109.47972 * 294.97412 * 15 13 12 18 18 C 1.53182 * 109.16084 * 182.39560 * 17 15 13 19 19 C 1.53171 * 109.03878 * 56.98216 * 18 17 15 20 20 C 1.53097 * 109.16439 * 303.02045 * 19 18 17 21 21 O 1.42897 * 109.49220 * 175.02583 * 15 13 12 22 22 C 1.46502 * 119.99746 * 219.15655 * 9 7 2 23 23 C 1.54241 * 108.89722 * 62.88134 * 22 9 7 24 24 C 1.50471 * 108.52396 * 159.26654 * 23 22 9 25 25 C 1.54069 * 112.50352 * 94.15187 * 24 23 22 26 26 C 1.54073 * 112.81129 * 318.27863 * 25 24 23 27 27 C 1.50466 * 112.49694 * 318.28545 * 26 25 24 28 28 C 1.45539 * 108.89444 * 299.99437 * 22 9 7 29 29 H 0.96995 * 120.00244 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46749 * 335.98147 * 10 9 7 31 31 H 1.09002 * 109.47256 * 215.98322 * 10 9 7 32 32 H 1.08996 * 109.46816 * 65.38599 * 11 10 9 33 33 H 1.09000 * 109.47158 * 305.38486 * 11 10 9 34 34 H 0.97002 * 120.00138 * 0.02562 * 12 11 10 35 35 H 1.09000 * 109.51996 * 302.30086 * 17 15 13 36 36 H 1.09000 * 109.52017 * 62.49293 * 17 15 13 37 37 H 1.08996 * 109.53914 * 176.85218 * 18 17 15 38 38 H 1.08997 * 109.54430 * 297.02261 * 18 17 15 39 39 H 1.09003 * 109.52248 * 62.91732 * 19 18 17 40 40 H 1.08996 * 109.52783 * 183.11164 * 19 18 17 41 41 H 1.08993 * 109.48659 * 177.59408 * 20 19 18 42 42 H 1.09007 * 109.47835 * 297.61531 * 20 19 18 43 43 H 1.09004 * 108.87532 * 181.39225 * 22 9 7 44 44 H 1.09003 * 109.62699 * 278.97266 * 23 22 9 45 45 H 1.08995 * 109.63357 * 39.55175 * 23 22 9 46 46 H 1.08996 * 108.87931 * 333.36554 * 24 23 22 47 47 H 1.09008 * 108.79528 * 214.87428 * 24 23 22 48 48 H 1.09001 * 108.81623 * 197.42015 * 25 24 23 49 49 H 1.09000 * 108.81656 * 79.13698 * 25 24 23 50 50 H 1.08996 * 108.87582 * 197.50549 * 26 25 24 51 51 H 1.08995 * 108.79505 * 79.01013 * 26 25 24 52 52 H 1.09000 * 109.63117 * 334.44895 * 27 26 25 53 53 H 1.08998 * 109.79475 * 213.95873 * 27 26 25 54 54 H 1.09003 * 108.89704 * 303.44106 * 28 22 9 55 55 H 1.08993 * 108.89687 * 61.93739 * 28 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3990 2.1034 -1.3955 5 1 1.5003 2.6222 0.7963 6 1 3.5936 1.4138 0.5991 7 6 2.0103 -1.2021 -0.0005 8 1 1.5777 -2.0752 -0.4663 9 7 3.2434 -1.2810 0.5897 10 6 3.5013 -0.5718 1.8453 11 6 3.3045 -1.5298 3.0219 12 7 3.4361 -0.7913 4.2802 13 6 3.3008 -1.4349 5.4567 14 8 3.0698 -2.6254 5.4735 15 6 3.4356 -0.6752 6.7511 16 1 2.7404 0.1644 6.7539 17 6 4.8679 -0.1525 6.8896 18 6 5.0128 0.5667 8.2343 19 6 4.6352 -0.3998 9.3611 20 6 3.2120 -0.9130 9.1271 21 8 3.1387 -1.5433 7.8466 22 6 4.3049 -2.0746 -0.0347 23 6 4.6403 -1.4650 -1.4113 24 6 6.0148 -1.9248 -1.8156 25 6 5.9783 -3.1846 -2.7017 26 6 4.9505 -4.2256 -2.2180 27 6 4.9496 -4.3814 -0.7214 28 6 3.8632 -3.4578 -0.1333 29 1 -0.4850 0.8400 -0.0004 30 1 2.8092 0.2652 1.9386 31 1 4.5254 -0.1984 1.8480 32 1 4.0592 -2.3152 2.9809 33 1 2.3119 -1.9764 2.9647 34 1 3.6205 0.1610 4.2668 35 1 5.5663 -0.9882 6.8462 36 1 5.0813 0.5443 6.0790 37 1 6.0448 0.8926 8.3640 38 1 4.3513 1.4326 8.2579 39 1 5.3290 -1.2406 9.3676 40 1 4.6823 0.1199 10.3180 41 1 2.9534 -1.6340 9.9025 42 1 2.5138 -0.0766 9.1611 43 1 5.1938 -2.0319 0.5948 44 1 3.9105 -1.8007 -2.1480 45 1 4.6231 -0.3773 -1.3442 46 1 6.5925 -2.1422 -0.9172 47 1 6.5065 -1.1217 -2.3646 48 1 6.9677 -3.6421 -2.7035 49 1 5.7276 -2.8904 -3.7209 50 1 5.1831 -5.1885 -2.6727 51 1 3.9570 -3.9144 -2.5408 52 1 5.9244 -4.0997 -0.3233 53 1 4.7319 -5.4165 -0.4582 54 1 3.5969 -3.8151 0.8615 55 1 2.9799 -3.5018 -0.7703 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670974331.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:09 Heat of formation + Delta-G solvation = -100.020490 kcal Electronic energy + Delta-G solvation = -31113.560253 eV Core-core repulsion = 27149.405354 eV Total energy + Delta-G solvation = -3964.154900 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.31697 -40.23979 -39.45846 -37.36774 -35.69516 -34.58503 -33.86589 -32.91288 -32.76278 -31.70764 -29.45011 -26.79610 -26.12393 -25.47398 -24.90600 -24.39324 -22.81329 -21.77877 -21.23420 -21.18136 -19.98941 -18.84168 -18.13073 -17.76398 -17.28645 -16.77556 -16.67186 -16.41426 -16.17387 -15.82045 -15.57321 -15.39401 -15.29987 -15.05338 -14.98058 -14.57660 -14.43946 -13.97902 -13.83758 -13.76056 -13.69033 -13.61436 -13.49646 -12.98144 -12.88198 -12.66092 -12.53574 -12.36725 -12.19456 -12.10461 -11.94914 -11.73116 -11.66039 -11.41483 -11.35005 -11.30462 -11.21475 -11.08691 -10.89459 -10.77633 -10.54413 -10.48635 -10.13108 -8.70069 -8.18503 -5.50879 1.36010 1.47849 1.52058 1.55118 1.81570 2.48003 2.93231 3.12803 3.37624 3.62146 3.75027 3.85230 3.89892 4.01876 4.04025 4.04731 4.14479 4.16799 4.19280 4.27378 4.40256 4.44332 4.47988 4.51928 4.57959 4.60663 4.63746 4.68480 4.80072 4.85790 4.86070 4.97519 5.00846 5.02468 5.08000 5.08326 5.13259 5.15720 5.16843 5.30134 5.36012 5.38042 5.38933 5.44539 5.45678 5.48434 5.63636 5.71226 5.77628 5.99774 6.10528 6.29340 6.53724 7.05604 7.19926 7.69786 8.12321 9.01887 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011504 B = 0.003071 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.247758 B = 9114.346874 C =10321.732849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.011 4.011 3 Si 0.919 3.081 4 H -0.302 1.302 5 H -0.299 1.299 6 H -0.225 1.225 7 C -0.251 4.251 8 H 0.032 0.968 9 N -0.606 5.606 10 C 0.142 3.858 11 C 0.117 3.883 12 N -0.709 5.709 13 C 0.510 3.490 14 O -0.579 6.579 15 C 0.078 3.922 16 H 0.105 0.895 17 C -0.141 4.141 18 C -0.118 4.118 19 C -0.155 4.155 20 C 0.049 3.951 21 O -0.394 6.394 22 C 0.178 3.822 23 C -0.114 4.114 24 C -0.112 4.112 25 C -0.110 4.110 26 C -0.117 4.117 27 C -0.104 4.104 28 C -0.117 4.117 29 H 0.260 0.740 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.028 0.972 34 H 0.415 0.585 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.042 0.958 45 H 0.043 0.957 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.075 0.925 49 H 0.055 0.945 50 H 0.069 0.931 51 H 0.038 0.962 52 H 0.076 0.924 53 H 0.063 0.937 54 H 0.035 0.965 55 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.831 3.067 11.802 20.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.230 1.230 5 H -0.226 1.226 6 H -0.147 1.147 7 C -0.381 4.381 8 H 0.050 0.950 9 N -0.328 5.328 10 C 0.016 3.984 11 C -0.009 4.009 12 N -0.362 5.362 13 C 0.296 3.704 14 O -0.458 6.458 15 C 0.017 3.983 16 H 0.122 0.878 17 C -0.179 4.179 18 C -0.155 4.155 19 C -0.193 4.193 20 C -0.027 4.027 21 O -0.313 6.313 22 C 0.073 3.927 23 C -0.153 4.153 24 C -0.150 4.150 25 C -0.147 4.147 26 C -0.155 4.155 27 C -0.142 4.142 28 C -0.156 4.156 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.251 0.749 35 H 0.081 0.919 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.094 0.906 49 H 0.074 0.926 50 H 0.088 0.912 51 H 0.057 0.943 52 H 0.095 0.905 53 H 0.082 0.918 54 H 0.054 0.946 55 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 16.486 2.105 11.772 20.367 hybrid contribution -0.869 1.142 -0.357 1.479 sum 15.617 3.247 11.415 19.614 Atomic orbital electron populations 1.70139 1.08226 1.27392 1.52571 1.26082 0.95230 1.01094 0.98416 0.86252 0.81618 0.80455 0.77150 1.23031 1.22647 1.14732 1.18354 0.92655 0.93485 1.33588 0.94995 1.44284 1.09864 1.58375 1.20283 1.21441 0.99766 0.93065 0.84134 1.21945 0.99803 0.96206 0.82993 1.45806 1.72167 1.13415 1.04847 1.20953 0.75825 0.87546 0.86053 1.90686 1.49274 1.17757 1.88111 1.21970 0.99658 0.92126 0.84510 0.87779 1.22164 0.93387 1.01302 1.01064 1.21621 1.03741 0.97990 0.92145 1.22208 0.96602 1.00012 1.00458 1.22934 0.97343 0.98776 0.83603 1.88028 1.90705 1.37630 1.14912 1.19575 0.89753 0.90242 0.93095 1.21587 0.97052 0.99127 0.97510 1.21299 0.95940 0.97527 1.00219 1.21869 0.99337 0.94840 0.98675 1.21312 0.99169 0.99227 0.95770 1.21229 0.98707 0.98534 0.95776 1.20821 0.98626 0.96557 0.99616 0.93064 0.93491 0.90669 0.92572 0.95313 0.74869 0.91893 0.88120 0.89318 0.89959 0.91946 0.88292 0.87869 0.91585 0.91384 0.93962 0.93851 0.91320 0.91806 0.90594 0.92599 0.91190 0.94283 0.90519 0.91848 0.94640 0.94675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.86 13.97 21.65 0.30 -57.56 16 2 C -0.01 -0.62 5.07 84.86 0.43 -0.19 16 3 Si 0.92 42.40 26.29 68.60 1.80 44.20 16 4 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.22 -8.92 5.64 99.48 0.56 -8.35 16 7 C -0.25 -13.64 8.85 84.03 0.74 -12.90 16 8 H 0.03 2.00 6.97 -2.91 -0.02 1.98 16 9 N -0.61 -26.52 1.87 -688.45 -1.29 -27.81 16 10 C 0.14 5.42 3.81 86.38 0.33 5.75 16 11 C 0.12 4.44 5.99 86.38 0.52 4.96 16 12 N -0.71 -21.59 5.52 -463.07 -2.56 -24.14 16 13 C 0.51 17.15 7.18 87.66 0.63 17.78 16 14 O -0.58 -25.99 16.51 15.94 0.26 -25.72 16 15 C 0.08 1.90 3.05 29.88 0.09 1.99 16 16 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 17 C -0.14 -2.38 5.37 30.69 0.16 -2.22 16 18 C -0.12 -1.36 6.03 30.71 0.19 -1.18 16 19 C -0.16 -1.99 6.14 30.68 0.19 -1.80 16 20 C 0.05 0.86 6.84 72.01 0.49 1.35 16 21 O -0.39 -11.07 9.94 -130.00 -1.29 -12.36 16 22 C 0.18 6.48 2.12 43.13 0.09 6.57 16 23 C -0.11 -3.92 4.69 30.20 0.14 -3.78 16 24 C -0.11 -2.83 5.31 30.14 0.16 -2.67 16 25 C -0.11 -2.49 5.85 31.32 0.18 -2.31 16 26 C -0.12 -3.01 5.32 30.14 0.16 -2.85 16 27 C -0.10 -2.84 5.61 30.20 0.17 -2.67 16 28 C -0.12 -4.27 4.43 28.74 0.13 -4.15 16 29 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.05 1.92 4.60 -2.38 -0.01 1.91 16 31 H 0.08 2.37 7.98 -2.39 -0.02 2.35 16 32 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 34 H 0.41 9.37 8.32 -92.71 -0.77 8.60 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.10 1.27 7.99 -2.39 -0.02 1.25 16 37 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.07 2.18 7.17 -2.38 -0.02 2.17 16 44 H 0.04 1.64 6.97 -2.39 -0.02 1.62 16 45 H 0.04 1.61 8.13 -2.39 -0.02 1.59 16 46 H 0.07 1.58 6.63 -2.39 -0.02 1.56 16 47 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 48 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.04 1.20 6.63 -2.39 -0.02 1.18 16 52 H 0.08 1.84 6.98 -2.39 -0.02 1.82 16 53 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 54 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 55 H 0.03 1.50 6.19 -2.39 -0.01 1.48 16 Total: -1.00 -76.02 408.77 1.97 -74.05 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: -0.06 Total: 27.65 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 4.81 Total: 1.69 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -3.54 Total: -109.51 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -1.03 Total: -38.08 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.80 Total: 44.20 kcal Total: -76.02 1.97 -74.05 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670974331.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.971 kcal (2) G-P(sol) polarization free energy of solvation -76.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds