Wall clock time and date at job start Tue Mar 31 2020 22:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.29042 * 2 1 4 4 N 1.46501 * 109.46842 * 302.13167 * 3 2 1 5 5 C 1.36932 * 120.00357 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99637 * 359.97438 * 5 4 3 7 7 C 1.38809 * 120.00389 * 179.97438 * 5 4 3 8 8 N 1.31620 * 119.99988 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00255 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46989 * 90.00170 * 9 7 5 11 11 H 1.48496 * 109.47426 * 210.00444 * 9 7 5 12 12 H 1.48499 * 109.47253 * 330.00548 * 9 7 5 13 13 C 1.54617 * 110.33096 * 237.75105 * 2 1 3 14 14 C 1.54598 * 102.91169 * 262.80828 * 13 2 1 15 15 N 1.48117 * 103.42068 * 322.86673 * 14 13 2 16 16 C 1.34777 * 127.03253 * 219.28557 * 15 14 13 17 17 O 1.21284 * 120.00276 * 179.68254 * 16 15 14 18 18 C 1.50702 * 120.00044 * 359.68924 * 16 15 14 19 19 C 1.52999 * 109.47405 * 180.02562 * 18 16 15 20 20 H 1.09002 * 109.48249 * 54.99639 * 19 18 16 21 21 C 1.53098 * 109.48010 * 175.02117 * 19 18 16 22 22 C 1.53178 * 109.15976 * 177.60079 * 21 19 18 23 23 C 1.53179 * 109.03547 * 303.01729 * 22 21 19 24 24 C 1.53004 * 109.52188 * 176.88597 * 23 22 21 25 25 C 1.53000 * 109.52316 * 297.01291 * 23 22 21 26 26 C 1.53088 * 109.16372 * 56.98571 * 23 22 21 27 27 O 1.42903 * 109.48512 * 294.96799 * 19 18 16 28 28 C 1.47483 * 105.93459 * 39.02679 * 15 14 13 29 29 H 1.08998 * 109.47253 * 297.86823 * 1 2 3 30 30 H 1.09000 * 109.46853 * 57.87474 * 1 2 3 31 31 H 1.09000 * 109.46885 * 177.86619 * 1 2 3 32 32 H 1.08997 * 109.47420 * 62.12797 * 3 2 1 33 33 H 1.08994 * 109.47380 * 182.13566 * 3 2 1 34 34 H 0.97005 * 120.00010 * 359.97438 * 4 3 2 35 35 H 0.96996 * 120.00386 * 180.02562 * 8 7 5 36 36 H 1.08996 * 110.73808 * 21.29403 * 13 2 1 37 37 H 1.08995 * 110.74144 * 144.62035 * 13 2 1 38 38 H 1.09000 * 110.61524 * 204.35190 * 14 13 2 39 39 H 1.08996 * 110.54629 * 81.34756 * 14 13 2 40 40 H 1.09000 * 109.47332 * 59.99388 * 18 16 15 41 41 H 1.09008 * 109.47175 * 299.99821 * 18 16 15 42 42 H 1.08990 * 109.52021 * 297.50286 * 21 19 18 43 43 H 1.08999 * 109.52366 * 57.63214 * 21 19 18 44 44 H 1.09000 * 109.54595 * 62.88180 * 22 21 19 45 45 H 1.08996 * 109.54603 * 183.06170 * 22 21 19 46 46 H 1.09007 * 109.46947 * 60.00189 * 24 23 22 47 47 H 1.08998 * 109.47104 * 180.02562 * 24 23 22 48 48 H 1.08998 * 109.47523 * 300.00233 * 24 23 22 49 49 H 1.08995 * 109.46826 * 60.00440 * 25 23 22 50 50 H 1.09000 * 109.46894 * 180.02562 * 25 23 22 51 51 H 1.09000 * 109.46726 * 299.99967 * 25 23 22 52 52 H 1.08998 * 109.48639 * 62.37353 * 26 23 22 53 53 H 1.09000 * 109.48145 * 182.40819 * 26 23 22 54 54 H 1.08997 * 109.91639 * 94.14040 * 28 15 14 55 55 H 1.09005 * 109.90978 * 215.22308 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0606 1.4351 0.0000 4 7 1.5408 2.1478 -1.1697 5 6 1.8832 3.4565 -1.3820 6 1 2.5361 3.9635 -0.6868 7 6 1.3912 4.1317 -2.4905 8 7 0.5951 3.5141 -3.3374 9 14 1.8577 5.9172 -2.7797 10 1 3.0937 5.9792 -3.6005 11 1 0.7540 6.6078 -3.4939 12 1 2.0964 6.5842 -1.4746 13 6 2.0672 -0.7736 -1.2262 14 6 2.3641 -2.1759 -0.6470 15 7 2.8804 -1.8849 0.7105 16 6 3.8923 -2.5092 1.3452 17 8 4.2151 -2.1608 2.4611 18 6 4.6228 -3.6402 0.6681 19 6 5.7164 -4.1700 1.5978 20 1 5.2762 -4.4484 2.5553 21 6 6.3759 -5.3971 0.9629 22 6 7.5088 -5.8852 1.8709 23 6 8.5019 -4.7398 2.0905 24 6 9.5974 -5.1913 3.0585 25 6 9.1320 -4.3459 0.7531 26 6 7.7603 -3.5381 2.6818 27 8 6.7007 -3.1545 1.8030 28 6 2.0649 -0.7680 1.2230 29 1 -0.3633 0.4804 0.9085 30 1 -0.3633 0.5465 -0.8703 31 1 -0.3633 -1.0270 -0.0383 32 1 1.7360 1.9425 0.9084 33 1 3.1497 1.4198 -0.0383 34 1 0.9547 1.6924 -1.7942 35 1 0.2516 3.9857 -4.1122 36 1 1.3107 -0.8298 -2.0089 37 1 2.9806 -0.3136 -1.6030 38 1 3.1196 -2.6860 -1.2447 39 1 1.4509 -2.7684 -0.5923 40 1 5.0742 -3.2796 -0.2561 41 1 3.9202 -4.4420 0.4405 42 1 5.6360 -6.1887 0.8461 43 1 6.7801 -5.1292 -0.0134 44 1 7.0975 -6.2000 2.8300 45 1 8.0180 -6.7255 1.3991 46 1 10.1212 -6.0504 2.6393 47 1 10.3032 -4.3756 3.2145 48 1 9.1479 -5.4697 4.0117 49 1 8.3511 -4.0222 0.0650 50 1 9.8388 -3.5312 0.9104 51 1 9.6553 -5.2040 0.3313 52 1 7.3469 -3.8082 3.6535 53 1 8.4536 -2.7055 2.8004 54 1 1.2330 -1.1552 1.8113 55 1 2.6800 -0.1109 1.8378 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671762495.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:39 Heat of formation + Delta-G solvation = -108.698924 kcal Electronic energy + Delta-G solvation = -30684.364540 eV Core-core repulsion = 26719.833316 eV Total energy + Delta-G solvation = -3964.531225 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.44200 -40.71936 -39.17291 -36.49133 -36.22328 -34.46423 -34.02764 -32.17262 -30.71939 -30.48068 -28.18088 -27.85452 -27.42567 -26.69856 -25.25980 -24.23862 -23.90871 -22.52685 -20.33609 -19.96200 -19.77646 -19.16672 -17.90637 -17.57686 -16.97214 -16.73365 -16.44290 -16.41088 -15.94012 -15.74608 -15.34067 -15.25626 -15.05131 -14.95276 -14.68841 -14.45361 -14.13900 -13.93354 -13.53565 -13.49894 -13.22756 -13.04648 -13.04270 -12.96660 -12.89141 -12.82850 -12.80812 -12.71360 -12.57352 -12.45707 -12.16833 -12.08760 -11.93720 -11.76628 -11.62970 -11.49838 -11.38240 -11.34185 -11.10605 -10.95053 -10.80848 -10.20612 -9.67607 -8.99121 -7.95737 -5.23214 1.46362 1.47360 1.55947 1.68724 2.00016 2.55072 2.87504 3.35602 3.39176 3.66083 3.69029 3.71834 3.79635 3.82495 3.84400 4.04332 4.14919 4.21019 4.25795 4.31678 4.35552 4.40231 4.44580 4.53515 4.61380 4.63119 4.67944 4.72806 4.73374 4.79487 4.80650 4.82099 4.89190 4.90076 4.94601 4.96696 5.02791 5.02958 5.07551 5.12131 5.13886 5.23373 5.25206 5.27807 5.31331 5.40307 5.40624 5.48354 5.54483 5.55119 6.27192 6.38300 6.61732 7.21159 7.34660 8.08633 8.36707 9.27297 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016579 B = 0.002218 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.454095 B =12623.460867 C =13478.661754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.071 4.071 3 C 0.167 3.833 4 N -0.733 5.733 5 C -0.248 4.248 6 H 0.066 0.934 7 C -0.069 4.069 8 N -0.963 5.963 9 Si 0.970 3.030 10 H -0.287 1.287 11 H -0.291 1.291 12 H -0.275 1.275 13 C -0.119 4.119 14 C 0.107 3.893 15 N -0.623 5.623 16 C 0.524 3.476 17 O -0.582 6.582 18 C -0.123 4.123 19 C 0.103 3.897 20 H 0.047 0.953 21 C -0.145 4.145 22 C -0.109 4.109 23 C -0.099 4.099 24 C -0.137 4.137 25 C -0.135 4.135 26 C 0.070 3.930 27 O -0.393 6.393 28 C 0.122 3.878 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.012 0.988 33 H 0.003 0.997 34 H 0.380 0.620 35 H 0.252 0.748 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.143 0.857 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.084 0.916 46 H 0.069 0.931 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.052 0.948 50 H 0.048 0.952 51 H 0.066 0.934 52 H 0.041 0.959 53 H 0.084 0.916 54 H 0.082 0.918 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.436 -26.536 8.220 30.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.072 4.072 3 C 0.040 3.960 4 N -0.377 5.377 5 C -0.380 4.380 6 H 0.084 0.916 7 C -0.262 4.262 8 N -0.614 5.614 9 Si 0.799 3.201 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.200 1.200 13 C -0.157 4.157 14 C -0.015 4.015 15 N -0.357 5.357 16 C 0.315 3.685 17 O -0.462 6.462 18 C -0.162 4.162 19 C 0.045 3.955 20 H 0.065 0.935 21 C -0.182 4.182 22 C -0.147 4.147 23 C -0.100 4.100 24 C -0.195 4.195 25 C -0.192 4.192 26 C -0.007 4.007 27 O -0.312 6.312 28 C -0.001 4.001 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.030 0.970 33 H 0.021 0.979 34 H 0.214 0.786 35 H 0.061 0.939 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.129 0.871 41 H 0.160 0.840 42 H 0.114 0.886 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.102 0.898 46 H 0.088 0.912 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.071 0.929 50 H 0.067 0.933 51 H 0.085 0.915 52 H 0.060 0.940 53 H 0.102 0.898 54 H 0.100 0.900 55 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.754 -26.069 8.826 29.928 hybrid contribution 0.006 1.488 -0.151 1.495 sum 11.760 -24.582 8.675 28.597 Atomic orbital electron populations 1.21734 0.92276 1.02393 1.01792 1.21507 0.97000 0.93582 0.95159 1.20766 0.94698 0.91076 0.89435 1.42446 1.58242 1.10070 1.26960 1.19557 1.23146 0.89339 1.05942 0.91617 1.25466 1.00742 1.02238 0.97747 1.69780 1.38505 1.37647 1.15441 0.85198 0.76913 0.80324 0.77660 1.21444 1.21776 1.20005 1.22654 1.01316 0.95013 0.96720 1.22720 1.01004 0.96574 0.81165 1.48975 1.33338 1.34577 1.18810 1.20936 0.78153 0.83935 0.85478 1.90686 1.66278 1.67425 1.21801 1.21817 0.97428 0.97030 0.99935 1.21880 0.88065 0.88256 0.97325 0.93477 1.22238 0.98956 0.97038 1.00014 1.21659 0.95632 0.97340 1.00030 1.21200 0.96252 0.95549 0.96979 1.21775 0.97514 1.01692 0.98487 1.21788 1.00168 1.01258 0.95959 1.22658 0.88641 0.97523 0.91864 1.87960 1.35799 1.40150 1.67298 1.21945 0.94405 0.88233 0.95557 0.92888 0.93487 0.89971 0.97009 0.97932 0.78561 0.93872 0.89257 0.92926 0.87620 0.87969 0.87079 0.83966 0.88603 0.90271 0.91853 0.89790 0.91194 0.92508 0.92462 0.92874 0.93295 0.91530 0.94048 0.89774 0.90028 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.62 8.04 71.98 0.58 -3.04 16 2 C -0.07 -2.25 0.67 -51.29 -0.03 -2.28 16 3 C 0.17 7.09 4.85 86.38 0.42 7.51 16 4 N -0.73 -37.42 5.12 -343.46 -1.76 -39.18 16 5 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 6 H 0.07 3.72 7.83 -2.91 -0.02 3.69 16 7 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 8 N -0.96 -58.20 13.06 21.65 0.28 -57.92 16 9 Si 0.97 46.80 29.55 68.60 2.03 48.82 16 10 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 11 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 12 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 13 C -0.12 -3.30 5.72 31.69 0.18 -3.12 16 14 C 0.11 2.06 6.93 86.61 0.60 2.66 16 15 N -0.62 -16.17 3.29 -810.08 -2.67 -18.84 16 16 C 0.52 14.61 7.77 87.66 0.68 15.29 16 17 O -0.58 -21.67 15.76 10.71 0.17 -21.50 16 18 C -0.12 -2.20 4.35 29.85 0.13 -2.07 16 19 C 0.10 2.02 2.19 30.63 0.07 2.08 16 20 H 0.05 1.06 7.96 -2.39 -0.02 1.04 16 21 C -0.15 -1.80 5.05 30.69 0.16 -1.64 16 22 C -0.11 -1.30 4.81 30.71 0.15 -1.16 16 23 C -0.10 -1.44 0.77 -52.09 -0.04 -1.48 16 24 C -0.14 -1.57 8.49 71.98 0.61 -0.95 16 25 C -0.13 -1.96 8.08 71.98 0.58 -1.38 16 26 C 0.07 1.44 5.54 72.01 0.40 1.84 16 27 O -0.39 -10.17 9.07 -135.22 -1.23 -11.40 16 28 C 0.12 3.60 6.28 86.53 0.54 4.15 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 1.63 6.75 -2.39 -0.02 1.61 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.00 0.13 8.11 -2.39 -0.02 0.11 16 34 H 0.38 19.88 6.18 -92.70 -0.57 19.31 16 35 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.09 2.41 7.85 -2.39 -0.02 2.39 16 37 H 0.05 1.75 7.85 -2.39 -0.02 1.73 16 38 H 0.11 1.48 7.23 -2.39 -0.02 1.47 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.11 1.81 7.90 -2.39 -0.02 1.79 16 41 H 0.14 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.08 0.97 6.63 -2.39 -0.02 0.95 16 44 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 47 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.05 0.90 6.15 -2.39 -0.01 0.88 16 50 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 52 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 53 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 54 H 0.08 2.13 7.68 -2.39 -0.02 2.11 16 55 H 0.05 1.71 7.60 -2.38 -0.02 1.69 16 Total: -1.00 -74.61 418.36 3.42 -71.19 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.27 Total: 29.29 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 6.33 Total: -0.47 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -4.14 Total: -115.94 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -1.06 Total: -32.90 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Total: -74.61 3.42 -71.19 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671762495.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.506 kcal (2) G-P(sol) polarization free energy of solvation -74.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds