Wall clock time and date at job start Tue Mar 31 2020 22:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 110.64121 * 2 1 4 4 N 1.46505 * 109.47151 * 300.70210 * 3 2 1 5 5 C 1.36936 * 120.00208 * 180.02562 * 4 3 2 6 6 H 1.07998 * 120.00032 * 0.02562 * 5 4 3 7 7 C 1.38814 * 120.00172 * 179.97438 * 5 4 3 8 8 N 1.31622 * 119.99497 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00196 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47173 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47405 * 119.99586 * 9 7 5 12 12 H 1.48502 * 109.47459 * 240.00192 * 9 7 5 13 13 C 1.55163 * 110.71746 * 236.66215 * 2 1 3 14 14 C 1.54904 * 101.58120 * 277.13858 * 13 2 1 15 15 N 1.47424 * 104.83647 * 322.98996 * 14 13 2 16 16 C 1.34774 * 125.65099 * 204.09627 * 15 14 13 17 17 O 1.21283 * 119.99842 * 180.02562 * 16 15 14 18 18 C 1.50698 * 119.99845 * 0.04134 * 16 15 14 19 19 C 1.53004 * 109.46668 * 180.02562 * 18 16 15 20 20 H 1.09000 * 109.47678 * 304.99150 * 19 18 16 21 21 C 1.53098 * 109.47666 * 184.97807 * 19 18 16 22 22 C 1.53185 * 109.16146 * 182.41607 * 21 19 18 23 23 C 1.53179 * 109.04430 * 56.95979 * 22 21 19 24 24 C 1.52997 * 109.51990 * 183.12220 * 23 22 21 25 25 C 1.53004 * 109.57375 * 62.96440 * 23 22 21 26 26 C 1.53096 * 109.16252 * 303.02555 * 23 22 21 27 27 O 1.42897 * 109.41378 * 57.61265 * 26 23 22 28 28 C 1.47028 * 108.69787 * 24.12942 * 15 14 13 29 29 H 1.09001 * 109.47002 * 296.85656 * 1 2 3 30 30 H 1.08993 * 109.46955 * 56.86094 * 1 2 3 31 31 H 1.09000 * 109.47050 * 176.85923 * 1 2 3 32 32 H 1.09001 * 109.47178 * 60.70124 * 3 2 1 33 33 H 1.08995 * 109.47228 * 180.70732 * 3 2 1 34 34 H 0.97003 * 120.00049 * 359.97438 * 4 3 2 35 35 H 0.97005 * 119.99674 * 180.02562 * 8 7 5 36 36 H 1.08994 * 111.00152 * 35.21358 * 13 2 1 37 37 H 1.08995 * 111.00289 * 159.05952 * 13 2 1 38 38 H 1.09001 * 110.36864 * 204.15009 * 14 13 2 39 39 H 1.09005 * 110.36796 * 81.83357 * 14 13 2 40 40 H 1.08998 * 109.46789 * 299.99585 * 18 16 15 41 41 H 1.08990 * 109.47146 * 60.00116 * 18 16 15 42 42 H 1.09000 * 109.52011 * 302.31090 * 21 19 18 43 43 H 1.09000 * 109.52611 * 62.49632 * 21 19 18 44 44 H 1.08998 * 109.52969 * 297.09665 * 22 21 19 45 45 H 1.08994 * 109.61547 * 176.87861 * 22 21 19 46 46 H 1.09006 * 109.46862 * 179.69121 * 24 23 22 47 47 H 1.09003 * 109.46987 * 299.68191 * 24 23 22 48 48 H 1.08996 * 109.47407 * 59.68697 * 24 23 22 49 49 H 1.09001 * 109.47077 * 300.27751 * 25 23 22 50 50 H 1.09000 * 109.46950 * 60.27911 * 25 23 22 51 51 H 1.08997 * 109.47016 * 180.28369 * 25 23 22 52 52 H 1.08998 * 109.47955 * 297.62590 * 26 23 22 53 53 H 1.09004 * 109.48614 * 177.59899 * 26 23 22 54 54 H 1.09004 * 109.88142 * 239.52046 * 28 15 14 55 55 H 1.09007 * 109.87781 * 118.36118 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0694 1.4317 0.0000 4 7 1.5816 2.1374 -1.1877 5 6 1.9370 3.4421 -1.4031 6 1 2.5773 3.9509 -0.6977 7 6 1.4752 4.1105 -2.5287 8 7 0.6953 3.4902 -3.3886 9 14 1.9595 5.8905 -2.8222 10 1 2.8357 6.3539 -1.7165 11 1 2.6902 5.9988 -4.1105 12 1 0.7383 6.7339 -2.8733 13 6 2.0790 -0.7976 -1.2125 14 6 2.0126 -2.2521 -0.6837 15 7 2.3716 -2.1519 0.7426 16 6 2.8851 -3.1453 1.4950 17 8 3.1434 -2.9493 2.6637 18 6 3.1384 -4.4994 0.8841 19 6 3.7181 -5.4371 1.9451 20 1 4.6078 -4.9846 2.3830 21 6 4.0911 -6.7729 1.2968 22 6 4.6140 -7.7266 2.3754 23 6 3.5464 -7.8856 3.4623 24 6 4.0872 -8.7745 4.5840 25 6 2.2940 -8.5264 2.8608 26 6 3.1948 -6.5066 4.0268 27 8 2.7446 -5.6603 2.9671 28 6 2.0761 -0.7891 1.2085 29 1 -0.3633 0.4643 0.9168 30 1 -0.3633 0.5618 -0.8605 31 1 -0.3633 -1.0261 -0.0563 32 1 1.7269 1.9490 0.8962 33 1 3.1590 1.4095 -0.0127 34 1 1.0074 1.6801 -1.8218 35 1 0.3729 3.9572 -4.1753 36 1 1.4396 -0.6698 -2.0859 37 1 3.1060 -0.5098 -1.4367 38 1 2.7292 -2.8809 -1.2120 39 1 1.0039 -2.6502 -0.7940 40 1 2.2008 -4.9102 0.5098 41 1 3.8458 -4.3999 0.0610 42 1 3.2102 -7.2065 0.8233 43 1 4.8657 -6.6104 0.5473 44 1 5.5233 -7.3164 2.8147 45 1 4.8298 -8.6983 1.9313 46 1 3.3288 -8.8826 5.3595 47 1 4.3372 -9.7560 4.1812 48 1 4.9806 -8.3184 5.0104 49 1 1.9107 -7.8935 2.0604 50 1 2.5453 -9.5080 2.4591 51 1 1.5337 -8.6341 3.6344 52 1 4.0777 -6.0684 4.4921 53 1 2.4048 -6.6090 4.7709 54 1 2.9869 -0.3180 1.5781 55 1 1.3263 -0.8221 1.9991 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671762496.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:48 Heat of formation + Delta-G solvation = -109.960634 kcal Electronic energy + Delta-G solvation = -30479.897104 eV Core-core repulsion = 26515.311168 eV Total energy + Delta-G solvation = -3964.585936 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 4.33 seconds Orbital eigenvalues (eV) -41.47622 -40.72928 -39.16888 -36.49294 -36.21625 -34.45482 -34.01755 -32.15669 -30.73426 -30.44591 -28.16469 -27.98614 -27.39284 -26.70673 -25.26730 -24.17846 -23.87468 -22.51521 -20.34565 -19.96697 -19.77735 -19.15754 -17.88526 -17.56694 -17.14035 -16.67548 -16.47960 -16.25773 -15.92240 -15.63706 -15.50036 -15.31196 -15.12037 -14.85422 -14.78762 -14.30205 -14.17377 -13.93227 -13.54986 -13.47725 -13.31047 -13.04947 -13.02950 -12.97499 -12.90468 -12.83465 -12.77153 -12.74409 -12.65783 -12.44615 -12.11576 -12.07066 -11.93269 -11.75904 -11.62123 -11.50076 -11.43092 -11.34237 -11.10808 -10.93549 -10.81202 -10.20356 -9.63084 -8.96696 -7.93975 -5.21137 1.48180 1.48702 1.58448 1.69268 1.99294 2.56855 2.86641 3.33808 3.40131 3.61839 3.67306 3.71780 3.80051 3.82959 3.84610 4.04646 4.15376 4.23151 4.24011 4.29186 4.32225 4.41301 4.42314 4.52842 4.61967 4.63237 4.67553 4.71239 4.72923 4.79611 4.81542 4.84262 4.88597 4.89657 4.96120 4.99752 5.03518 5.04466 5.07945 5.11670 5.14826 5.21911 5.24423 5.30467 5.32259 5.34855 5.40854 5.48425 5.51698 5.55443 6.28960 6.37277 6.58459 7.20695 7.36665 8.11013 8.37785 9.29390 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.035975 B = 0.001857 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.134063 B =15074.634147 C =15165.953676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.070 4.070 3 C 0.168 3.832 4 N -0.734 5.734 5 C -0.244 4.244 6 H 0.070 0.930 7 C -0.071 4.071 8 N -0.964 5.964 9 Si 0.969 3.031 10 H -0.271 1.271 11 H -0.292 1.292 12 H -0.294 1.294 13 C -0.115 4.115 14 C 0.105 3.895 15 N -0.618 5.618 16 C 0.522 3.478 17 O -0.581 6.581 18 C -0.123 4.123 19 C 0.104 3.896 20 H 0.043 0.957 21 C -0.145 4.145 22 C -0.110 4.110 23 C -0.100 4.100 24 C -0.138 4.138 25 C -0.133 4.133 26 C 0.071 3.929 27 O -0.389 6.389 28 C 0.126 3.874 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.015 0.985 33 H 0.017 0.983 34 H 0.380 0.620 35 H 0.251 0.749 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.118 0.882 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.054 0.946 49 H 0.054 0.946 50 H 0.064 0.936 51 H 0.051 0.949 52 H 0.038 0.962 53 H 0.088 0.912 54 H 0.054 0.946 55 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.819 -29.206 9.248 31.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.071 4.071 3 C 0.041 3.959 4 N -0.378 5.378 5 C -0.376 4.376 6 H 0.088 0.912 7 C -0.263 4.263 8 N -0.615 5.615 9 Si 0.799 3.201 10 H -0.195 1.195 11 H -0.219 1.219 12 H -0.221 1.221 13 C -0.153 4.153 14 C -0.017 4.017 15 N -0.352 5.352 16 C 0.312 3.688 17 O -0.461 6.461 18 C -0.162 4.162 19 C 0.046 3.954 20 H 0.061 0.939 21 C -0.183 4.183 22 C -0.148 4.148 23 C -0.100 4.100 24 C -0.195 4.195 25 C -0.190 4.190 26 C -0.006 4.006 27 O -0.308 6.308 28 C 0.002 3.998 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.033 0.967 33 H 0.034 0.966 34 H 0.213 0.787 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.106 0.894 40 H 0.136 0.864 41 H 0.154 0.846 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.073 0.927 50 H 0.083 0.917 51 H 0.070 0.930 52 H 0.056 0.944 53 H 0.106 0.894 54 H 0.072 0.928 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.896 -28.935 9.963 31.165 hybrid contribution 0.139 1.441 -0.196 1.461 sum 6.035 -27.494 9.768 29.795 Atomic orbital electron populations 1.21680 0.92877 1.01885 1.01765 1.21619 0.96612 0.93888 0.94971 1.20673 0.95519 0.90369 0.89333 1.42442 1.59733 1.10619 1.24997 1.19623 1.23719 0.89572 1.04729 0.91189 1.25462 1.01023 1.02156 0.97678 1.69796 1.39915 1.37660 1.14141 0.85132 0.77107 0.80422 0.77435 1.19534 1.21933 1.22081 1.22751 1.01741 0.93664 0.97111 1.22553 1.02404 0.97413 0.79304 1.48639 1.63014 1.10973 1.12551 1.20946 0.75926 0.86309 0.85587 1.90687 1.53629 1.83381 1.18357 1.21811 1.05745 0.89490 0.99147 1.21843 0.90958 0.94688 0.87958 0.93917 1.22239 1.02905 0.94315 0.98802 1.21665 0.97223 1.00348 0.95550 1.21208 0.96797 0.95250 0.96783 1.21777 1.00864 0.99477 0.97393 1.21778 0.96145 1.00319 1.00796 1.22656 0.99519 0.89273 0.89174 1.87933 1.40020 1.68755 1.34114 1.21772 0.99507 0.82340 0.96148 0.93027 0.93210 0.90967 0.96727 0.96552 0.78678 0.93977 0.89696 0.91467 0.87525 0.89431 0.86364 0.84583 0.89900 0.89000 0.92177 0.89868 0.92293 0.91294 0.92676 0.92666 0.91681 0.93037 0.94363 0.89356 0.92801 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.77 8.29 71.98 0.60 -3.18 16 2 C -0.07 -2.18 0.61 -50.99 -0.03 -2.21 16 3 C 0.17 6.75 5.07 86.38 0.44 7.18 16 4 N -0.73 -36.26 5.13 -343.45 -1.76 -38.02 16 5 C -0.24 -13.57 9.99 84.03 0.84 -12.73 16 6 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 7 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 8 N -0.96 -57.57 13.06 21.65 0.28 -57.29 16 9 Si 0.97 45.97 29.55 68.60 2.03 48.00 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 12 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 13 C -0.11 -3.09 5.60 31.99 0.18 -2.91 16 14 C 0.10 2.05 6.37 86.85 0.55 2.60 16 15 N -0.62 -15.77 3.33 -811.79 -2.70 -18.47 16 16 C 0.52 14.02 7.73 87.66 0.68 14.70 16 17 O -0.58 -20.96 15.75 10.70 0.17 -20.79 16 18 C -0.12 -2.08 4.42 29.85 0.13 -1.95 16 19 C 0.10 1.94 2.19 30.63 0.07 2.01 16 20 H 0.04 0.97 7.95 -2.39 -0.02 0.95 16 21 C -0.15 -1.71 5.06 30.69 0.16 -1.56 16 22 C -0.11 -1.27 4.81 30.72 0.15 -1.12 16 23 C -0.10 -1.30 0.77 -52.09 -0.04 -1.34 16 24 C -0.14 -1.42 8.49 71.98 0.61 -0.81 16 25 C -0.13 -1.64 8.08 71.98 0.58 -1.06 16 26 C 0.07 1.33 5.54 72.01 0.40 1.72 16 27 O -0.39 -9.19 9.07 -135.24 -1.23 -10.42 16 28 C 0.13 3.76 6.04 86.73 0.52 4.29 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 1.75 6.84 -2.39 -0.02 1.73 16 31 H 0.07 1.80 7.41 -2.39 -0.02 1.78 16 32 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.38 19.40 6.29 -92.71 -0.58 18.81 16 35 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 36 H 0.08 2.39 8.04 -2.39 -0.02 2.37 16 37 H 0.07 1.97 8.05 -2.39 -0.02 1.95 16 38 H 0.11 1.43 7.48 -2.39 -0.02 1.41 16 39 H 0.09 1.46 7.69 -2.38 -0.02 1.44 16 40 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.14 1.45 7.85 -2.39 -0.02 1.43 16 42 H 0.08 0.89 6.63 -2.39 -0.02 0.88 16 43 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 47 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.05 0.78 6.14 -2.39 -0.01 0.77 16 50 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 52 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 53 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 54 H 0.05 1.75 7.82 -2.39 -0.02 1.73 16 55 H 0.06 1.89 7.84 -2.38 -0.02 1.87 16 Total: -1.00 -71.54 417.93 3.34 -68.19 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.26 Total: 28.68 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 6.30 Total: 0.11 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -4.18 Total: -113.78 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -1.06 Total: -31.20 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -71.54 3.34 -68.19 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671762496.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.767 kcal (2) G-P(sol) polarization free energy of solvation -71.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.33 seconds