Wall clock time and date at job start Tue Mar 31 2020 22:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 110.88678 * 2 1 4 4 N 1.46508 * 109.47120 * 62.42893 * 3 2 1 5 5 C 1.36936 * 120.00088 * 179.97438 * 4 3 2 6 6 H 1.08006 * 120.00040 * 359.97438 * 5 4 3 7 7 C 1.38807 * 120.00183 * 180.02562 * 5 4 3 8 8 N 1.31624 * 119.99927 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00347 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46777 * 60.00060 * 9 7 5 11 11 H 1.48496 * 109.47296 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47138 * 300.00101 * 9 7 5 13 13 C 1.55152 * 111.00152 * 123.88578 * 2 1 3 14 14 C 1.54320 * 102.94516 * 82.61174 * 13 2 1 15 15 N 1.47016 * 107.27223 * 22.18823 * 14 13 2 16 16 C 1.34777 * 125.65001 * 181.02781 * 15 14 13 17 17 O 1.21278 * 120.00224 * 180.02562 * 16 15 14 18 18 C 1.50700 * 119.99675 * 0.02562 * 16 15 14 19 19 C 1.53007 * 109.47038 * 180.02562 * 18 16 15 20 20 H 1.08995 * 109.48770 * 304.97500 * 19 18 16 21 21 C 1.53087 * 109.48125 * 184.94219 * 19 18 16 22 22 C 1.53184 * 109.21500 * 182.44164 * 21 19 18 23 23 C 1.53175 * 109.02988 * 56.88738 * 22 21 19 24 24 C 1.53006 * 109.52264 * 183.17898 * 23 22 21 25 25 C 1.52998 * 109.52156 * 63.05288 * 23 22 21 26 26 C 1.53090 * 109.21669 * 303.11222 * 23 22 21 27 27 O 1.42901 * 109.47724 * 65.00198 * 19 18 16 28 28 C 1.47426 * 108.70310 * 1.28994 * 15 14 13 29 29 H 1.09000 * 109.47104 * 297.56997 * 1 2 3 30 30 H 1.09006 * 109.47509 * 57.56698 * 1 2 3 31 31 H 1.09002 * 109.47560 * 177.57415 * 1 2 3 32 32 H 1.08996 * 109.46904 * 182.42666 * 3 2 1 33 33 H 1.08998 * 109.47443 * 302.43167 * 3 2 1 34 34 H 0.96999 * 119.99783 * 0.02562 * 4 3 2 35 35 H 0.96996 * 120.00350 * 180.02562 * 8 7 5 36 36 H 1.08998 * 110.72346 * 324.23805 * 13 2 1 37 37 H 1.09007 * 110.86725 * 201.04203 * 13 2 1 38 38 H 1.09002 * 109.87722 * 262.77143 * 14 13 2 39 39 H 1.08996 * 110.01501 * 141.68539 * 14 13 2 40 40 H 1.09000 * 109.47417 * 60.00602 * 18 16 15 41 41 H 1.08995 * 109.47650 * 299.99971 * 18 16 15 42 42 H 1.08994 * 109.52701 * 302.31696 * 21 19 18 43 43 H 1.09009 * 109.52261 * 62.44264 * 21 19 18 44 44 H 1.09004 * 109.49234 * 297.05609 * 22 21 19 45 45 H 1.08996 * 109.59912 * 176.78562 * 22 21 19 46 46 H 1.09001 * 109.47002 * 299.87175 * 24 23 22 47 47 H 1.08993 * 109.46955 * 59.87612 * 24 23 22 48 48 H 1.09000 * 109.47050 * 179.87441 * 24 23 22 49 49 H 1.09007 * 109.46758 * 180.12603 * 25 23 22 50 50 H 1.09001 * 109.46968 * 300.11925 * 25 23 22 51 51 H 1.08993 * 109.47541 * 60.12643 * 25 23 22 52 52 H 1.08997 * 109.48261 * 177.55916 * 26 23 22 53 53 H 1.09004 * 109.48462 * 297.58324 * 26 23 22 54 54 H 1.08994 * 110.36568 * 94.48206 * 28 15 14 55 55 H 1.08999 * 110.36715 * 216.80487 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 7 1.6522 2.1136 1.2244 5 6 2.0245 3.4126 1.4465 6 1 2.6304 3.9326 0.7192 7 6 1.6240 4.0606 2.6068 8 7 0.8860 3.4268 3.4934 9 14 2.1323 5.8323 2.9101 10 1 1.6062 6.6918 1.8193 11 1 1.5800 6.2901 4.2103 12 1 3.6141 5.9237 2.9414 13 6 2.0860 -0.8076 1.2024 14 6 2.0294 -2.2643 0.6963 15 7 2.0152 -2.2157 -0.7730 16 6 1.9492 -3.2828 -1.5936 17 8 1.9444 -3.1238 -2.7959 18 6 1.8813 -4.6735 -1.0171 19 6 1.8149 -5.6945 -2.1548 20 1 0.9775 -5.4548 -2.8101 21 6 1.6220 -7.0968 -1.5718 22 6 1.6175 -8.1204 -2.7114 23 6 2.9229 -7.9929 -3.5025 24 6 2.8965 -8.9557 -4.6914 25 6 4.1063 -8.3339 -2.5946 26 6 3.0657 -6.5560 -4.0110 27 8 3.0319 -5.6544 -2.9027 28 6 2.0916 -0.8068 -1.2001 29 1 -0.3633 0.4756 0.9110 30 1 -0.3634 0.5512 -0.8674 31 1 -0.3634 -1.0267 -0.0435 32 1 3.1642 1.4028 -0.0435 33 1 1.6901 1.9654 -0.8673 34 1 1.1090 1.6462 1.8781 35 1 0.6058 3.8797 4.3041 36 1 1.4520 -0.6790 2.0797 37 1 3.1127 -0.5161 1.4244 38 1 1.1228 -2.7480 1.0600 39 1 2.9058 -2.8132 1.0407 40 1 0.9920 -4.7655 -0.3937 41 1 2.7693 -4.8604 -0.4133 42 1 2.4381 -7.3213 -0.8851 43 1 0.6732 -7.1416 -1.0369 44 1 0.7713 -7.9270 -3.3707 45 1 1.5377 -9.1262 -2.2991 46 1 2.7927 -9.9783 -4.3285 47 1 2.0533 -8.7120 -5.3375 48 1 3.8249 -8.8626 -5.2549 49 1 5.0349 -8.2407 -3.1577 50 1 4.1243 -7.6475 -1.7480 51 1 4.0027 -9.3563 -2.2313 52 1 4.0140 -6.4492 -4.5376 53 1 2.2447 -6.3276 -4.6907 54 1 3.1259 -0.5260 -1.3982 55 1 1.4774 -0.6451 -2.0860 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671762497.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:55 Heat of formation + Delta-G solvation = -110.029365 kcal Electronic energy + Delta-G solvation = -30499.992913 eV Core-core repulsion = 26535.403996 eV Total energy + Delta-G solvation = -3964.588917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.47084 -40.72168 -39.13149 -36.47802 -36.21494 -34.43021 -34.00393 -32.12545 -30.70293 -30.49367 -28.16700 -28.05328 -27.36325 -26.71152 -25.25512 -24.17893 -23.82415 -22.49982 -20.38717 -19.93020 -19.75350 -19.14737 -17.89153 -17.58925 -17.04052 -16.66497 -16.48477 -16.37166 -15.93628 -15.52814 -15.42091 -15.28597 -15.17253 -14.83111 -14.76107 -14.42901 -14.17086 -13.84783 -13.63422 -13.51043 -13.29691 -13.07038 -13.00867 -12.96651 -12.85363 -12.84390 -12.78490 -12.73886 -12.57861 -12.44240 -12.17819 -12.06516 -11.93354 -11.76228 -11.59940 -11.50728 -11.45433 -11.34642 -11.10654 -10.91239 -10.80756 -10.20300 -9.60156 -8.95534 -7.92526 -5.19791 1.49069 1.51144 1.57199 1.69809 1.99990 2.58000 2.87022 3.32778 3.41282 3.62784 3.66811 3.71273 3.80167 3.84310 3.87307 4.04925 4.16198 4.21464 4.25241 4.30102 4.33935 4.39397 4.41595 4.54197 4.61865 4.62859 4.66955 4.72803 4.73420 4.80127 4.81530 4.83521 4.88253 4.90127 4.96252 5.01656 5.03780 5.07076 5.07956 5.09816 5.14704 5.19241 5.24428 5.32146 5.32886 5.34074 5.40849 5.46031 5.52084 5.55201 6.29901 6.37500 6.59279 7.21252 7.37681 8.12476 8.38822 9.30425 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.037291 B = 0.001855 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.681181 B =15089.455151 C =15250.477792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.071 4.071 3 C 0.168 3.832 4 N -0.735 5.735 5 C -0.246 4.246 6 H 0.071 0.929 7 C -0.071 4.071 8 N -0.965 5.965 9 Si 0.970 3.030 10 H -0.281 1.281 11 H -0.294 1.294 12 H -0.280 1.280 13 C -0.114 4.114 14 C 0.106 3.894 15 N -0.617 5.617 16 C 0.523 3.477 17 O -0.580 6.580 18 C -0.123 4.123 19 C 0.104 3.896 20 H 0.044 0.956 21 C -0.145 4.145 22 C -0.110 4.110 23 C -0.100 4.100 24 C -0.138 4.138 25 C -0.133 4.133 26 C 0.071 3.929 27 O -0.390 6.390 28 C 0.124 3.876 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.021 0.979 33 H 0.015 0.985 34 H 0.379 0.621 35 H 0.251 0.749 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.136 0.864 41 H 0.116 0.884 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.083 0.917 46 H 0.068 0.932 47 H 0.055 0.945 48 H 0.058 0.942 49 H 0.050 0.950 50 H 0.054 0.946 51 H 0.064 0.936 52 H 0.088 0.912 53 H 0.039 0.961 54 H 0.063 0.937 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.849 -29.290 -10.066 31.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.072 4.072 3 C 0.041 3.959 4 N -0.378 5.378 5 C -0.378 4.378 6 H 0.089 0.911 7 C -0.263 4.263 8 N -0.615 5.615 9 Si 0.799 3.201 10 H -0.208 1.208 11 H -0.221 1.221 12 H -0.206 1.206 13 C -0.152 4.152 14 C -0.015 4.015 15 N -0.351 5.351 16 C 0.314 3.686 17 O -0.460 6.460 18 C -0.162 4.162 19 C 0.046 3.954 20 H 0.062 0.938 21 C -0.183 4.183 22 C -0.147 4.147 23 C -0.100 4.100 24 C -0.195 4.195 25 C -0.191 4.191 26 C -0.006 4.006 27 O -0.309 6.309 28 C 0.000 4.000 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.033 0.967 34 H 0.212 0.788 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.154 0.846 41 H 0.134 0.866 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.079 0.921 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.073 0.927 51 H 0.083 0.917 52 H 0.106 0.894 53 H 0.057 0.943 54 H 0.082 0.918 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.079 -29.009 -10.740 31.003 hybrid contribution -0.112 1.339 0.221 1.362 sum 1.968 -27.670 -10.519 29.667 Atomic orbital electron populations 1.21559 0.93148 1.01424 1.01546 1.21789 0.96353 0.93887 0.95162 1.20639 0.96075 0.90366 0.88814 1.42411 1.63030 1.11388 1.20978 1.19560 1.25657 0.90090 1.02478 0.91113 1.25464 1.01400 1.02158 0.97300 1.69781 1.42512 1.37966 1.11285 0.85270 0.77793 0.80441 0.76586 1.20785 1.22056 1.20577 1.22590 1.01910 0.93254 0.97405 1.22206 1.03653 0.97455 0.78230 1.48603 1.72680 1.05695 1.08081 1.20894 0.75104 0.86846 0.85784 1.90687 1.51924 1.86777 1.16579 1.21807 1.07154 0.88391 0.98875 1.21841 0.87175 0.94504 0.91895 0.93788 1.22237 1.04057 0.93142 0.98855 1.21665 0.96255 0.99949 0.96881 1.21207 0.96723 0.95101 0.97014 1.21777 1.02024 0.99008 0.96692 1.21781 0.96559 1.01466 0.99258 1.22654 1.01636 0.88377 0.87941 1.87938 1.37539 1.61926 1.43483 1.22092 1.00389 0.80700 0.96789 0.93211 0.93365 0.91528 0.96130 0.96689 0.78787 0.94001 0.90062 0.91244 0.88956 0.89227 0.84595 0.86579 0.90029 0.88977 0.92102 0.89879 0.91303 0.92629 0.92314 0.93061 0.92721 0.91684 0.89398 0.94282 0.91849 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.67 8.41 71.98 0.61 -3.07 16 2 C -0.07 -2.20 0.62 -50.72 -0.03 -2.23 16 3 C 0.17 6.67 5.23 86.38 0.45 7.12 16 4 N -0.73 -36.15 5.17 -343.45 -1.78 -37.93 16 5 C -0.25 -13.60 9.99 84.03 0.84 -12.76 16 6 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 7 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 8 N -0.96 -57.57 13.06 21.65 0.28 -57.29 16 9 Si 0.97 45.85 29.55 68.60 2.03 47.88 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 11 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 C -0.11 -3.09 5.38 31.78 0.17 -2.92 16 14 C 0.11 2.12 6.15 86.73 0.53 2.65 16 15 N -0.62 -15.57 3.31 -811.39 -2.69 -18.26 16 16 C 0.52 13.90 7.73 87.66 0.68 14.58 16 17 O -0.58 -20.64 15.68 10.74 0.17 -20.47 16 18 C -0.12 -2.09 4.60 29.85 0.14 -1.95 16 19 C 0.10 1.94 2.19 30.63 0.07 2.01 16 20 H 0.04 0.98 7.96 -2.39 -0.02 0.96 16 21 C -0.15 -1.72 5.05 30.69 0.16 -1.56 16 22 C -0.11 -1.26 4.81 30.71 0.15 -1.11 16 23 C -0.10 -1.31 0.77 -52.09 -0.04 -1.35 16 24 C -0.14 -1.42 8.49 71.98 0.61 -0.81 16 25 C -0.13 -1.67 8.08 71.98 0.58 -1.09 16 26 C 0.07 1.33 5.54 72.01 0.40 1.73 16 27 O -0.39 -9.23 9.06 -135.22 -1.23 -10.45 16 28 C 0.12 3.64 5.85 86.93 0.51 4.15 16 29 H 0.05 1.73 7.19 -2.39 -0.02 1.72 16 30 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.07 1.74 7.89 -2.39 -0.02 1.72 16 32 H 0.02 0.83 8.10 -2.39 -0.02 0.81 16 33 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.38 19.37 6.37 -92.71 -0.59 18.77 16 35 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 36 H 0.08 2.32 7.95 -2.39 -0.02 2.30 16 37 H 0.07 2.03 8.04 -2.38 -0.02 2.02 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 39 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.08 0.90 6.63 -2.39 -0.02 0.88 16 43 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 44 H 0.06 0.73 8.14 -2.38 -0.02 0.72 16 45 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 48 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 50 H 0.05 0.79 6.14 -2.39 -0.01 0.78 16 51 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 53 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 54 H 0.06 1.91 8.01 -2.39 -0.02 1.89 16 55 H 0.06 2.06 7.95 -2.39 -0.02 2.04 16 Total: -1.00 -70.66 420.20 3.31 -67.35 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.24 Total: 29.31 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 6.28 Total: -0.14 kcal Atomic # 7 Polarization: -109.29 SS G_CDS: -4.18 Total: -113.48 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -1.06 Total: -30.92 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -70.66 3.31 -67.35 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671762497.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.683 kcal (2) G-P(sol) polarization free energy of solvation -70.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds