Wall clock time and date at job start Tue Mar 31 2020 21:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42901 * 114.00024 * 2 1 4 4 C 1.52999 * 109.47348 * 179.97438 * 3 2 1 5 5 C 1.50690 * 110.43894 * 300.70664 * 4 3 2 6 6 O 1.21282 * 120.00412 * 237.45577 * 5 4 3 7 7 N 1.34776 * 120.00277 * 57.45541 * 5 4 3 8 8 C 1.46505 * 120.00168 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.46992 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.52907 * 60.07725 * 9 8 7 11 11 C 1.53069 * 109.62290 * 180.10590 * 9 8 7 12 12 C 1.53049 * 109.66061 * 181.16988 * 11 9 8 13 13 C 1.53190 * 109.30985 * 298.69730 * 12 11 9 14 14 N 1.46927 * 108.77487 * 54.63327 * 13 12 11 15 15 C 1.36944 * 120.62580 * 126.41080 * 14 13 12 16 16 H 1.07994 * 120.00320 * 325.85567 * 15 14 13 17 17 C 1.38817 * 119.99575 * 145.85845 * 15 14 13 18 18 N 1.31618 * 120.00003 * 151.73757 * 17 15 14 19 19 Si 1.86802 * 119.99979 * 331.73764 * 17 15 14 20 20 H 1.48497 * 109.46932 * 84.41655 * 19 17 15 21 21 H 1.48503 * 109.46988 * 204.41644 * 19 17 15 22 22 H 1.48494 * 109.47281 * 324.41415 * 19 17 15 23 23 C 1.46920 * 118.74263 * 306.38875 * 14 13 12 24 24 C 1.54898 * 110.59526 * 63.32252 * 4 3 2 25 25 C 1.54887 * 102.74801 * 156.67214 * 24 4 3 26 26 C 1.54259 * 104.19851 * 322.05887 * 25 24 4 27 27 C 1.53878 * 106.59842 * 23.60996 * 26 25 24 28 28 H 1.08998 * 109.47687 * 59.99991 * 1 2 3 29 29 H 1.08999 * 109.47242 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47467 * 299.99930 * 1 2 3 31 31 H 1.09001 * 109.47044 * 60.00316 * 3 2 1 32 32 H 1.08994 * 109.47347 * 300.00459 * 3 2 1 33 33 H 0.96999 * 119.99962 * 359.97438 * 7 5 4 34 34 H 1.09000 * 109.47458 * 59.99800 * 8 7 5 35 35 H 1.08997 * 109.46876 * 299.99717 * 8 7 5 36 36 H 1.09000 * 109.47102 * 299.92550 * 10 9 8 37 37 H 1.09000 * 109.46498 * 59.91485 * 10 9 8 38 38 H 1.08994 * 109.47352 * 179.97438 * 10 9 8 39 39 H 1.08999 * 109.35038 * 61.14348 * 11 9 8 40 40 H 1.09007 * 109.44076 * 301.24982 * 11 9 8 41 41 H 1.08996 * 109.49609 * 178.74834 * 12 11 9 42 42 H 1.09000 * 109.49494 * 58.65245 * 12 11 9 43 43 H 1.08999 * 109.58688 * 294.84919 * 13 12 11 44 44 H 1.08996 * 109.70399 * 174.48951 * 13 12 11 45 45 H 0.96994 * 120.00032 * 179.97438 * 18 17 15 46 46 H 1.08998 * 109.58804 * 173.39016 * 23 14 13 47 47 H 1.08994 * 109.58825 * 293.68219 * 23 14 13 48 48 H 1.09000 * 110.75182 * 274.99164 * 24 4 3 49 49 H 1.09002 * 110.75535 * 38.35600 * 24 4 3 50 50 H 1.09005 * 110.48476 * 203.37453 * 25 24 4 51 51 H 1.09010 * 110.48146 * 80.73717 * 25 24 4 52 52 H 1.08998 * 110.03260 * 264.32620 * 26 25 24 53 53 H 1.09001 * 110.07674 * 142.91520 * 26 25 24 54 54 H 1.09005 * 110.02844 * 240.71387 * 27 26 25 55 55 H 1.08997 * 110.03301 * 119.28950 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0025 0.4246 1.2150 6 8 4.7863 0.9362 1.9864 7 7 3.5495 -0.8239 1.4441 8 6 4.0033 -1.5626 2.6251 9 6 3.3428 -2.9425 2.6483 10 6 3.7296 -3.7160 1.3861 11 6 3.8126 -3.7166 3.8825 12 6 3.1751 -5.1079 3.8912 13 6 1.6513 -4.9665 3.9604 14 7 1.2056 -4.1054 2.8566 15 6 0.2353 -4.5299 1.9885 16 1 0.1695 -5.5741 1.7209 17 6 -0.6638 -3.6180 1.4527 18 7 -1.2020 -3.8405 0.2723 19 14 -1.1097 -2.0752 2.4068 20 1 -0.0920 -1.0243 2.1521 21 1 -2.4429 -1.5899 1.9680 22 1 -1.1489 -2.3850 3.8585 23 6 1.8204 -2.7800 2.7020 24 6 4.0277 0.4925 -1.2947 25 6 5.4902 0.9886 -1.4126 26 6 5.4306 2.4572 -0.9443 27 6 4.1876 2.5819 -0.0458 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 2.9224 -1.2330 0.8275 34 1 3.7279 -1.0133 3.5254 35 1 5.0864 -1.6784 2.5872 36 1 3.3918 -3.1680 0.5064 37 1 4.8128 -3.8313 1.3483 38 1 3.2590 -4.6989 1.4037 39 1 3.5171 -3.1762 4.7818 40 1 4.8980 -3.8146 3.8578 41 1 3.5286 -5.6647 4.7590 42 1 3.4502 -5.6398 2.9804 43 1 1.3690 -4.5162 4.9120 44 1 1.1866 -5.9482 3.8686 45 1 -1.8305 -3.2035 -0.1019 46 1 1.4694 -2.3198 1.7784 47 1 1.5499 -2.1506 3.5497 48 1 3.9948 -0.5919 -1.1895 49 1 3.4395 0.8164 -2.1533 50 1 5.8303 0.9313 -2.4467 51 1 6.1439 0.4070 -0.7623 52 1 5.3373 3.1199 -1.8046 53 1 6.3276 2.7058 -0.3773 54 1 3.4912 3.3052 -0.4701 55 1 4.4816 2.8903 0.9575 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671888040.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:45 Heat of formation + Delta-G solvation = -93.719822 kcal Electronic energy + Delta-G solvation = -33496.076638 eV Core-core repulsion = 29532.194956 eV Total energy + Delta-G solvation = -3963.881682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 5.66 seconds Orbital eigenvalues (eV) -41.71565 -40.30001 -38.84609 -37.81464 -36.31223 -34.84338 -33.24678 -32.30281 -31.64162 -29.67588 -28.07056 -27.92249 -27.21629 -27.00100 -25.31072 -24.19381 -23.21193 -21.93389 -21.31399 -20.50877 -19.71525 -18.53724 -18.19691 -17.42612 -17.24828 -16.96307 -16.76843 -16.57391 -16.05886 -15.92511 -15.69623 -15.38232 -15.26392 -15.02277 -14.95859 -14.51755 -14.31934 -14.15843 -13.91453 -13.79354 -13.69736 -13.34248 -13.08203 -12.92006 -12.61377 -12.49737 -12.40937 -12.31731 -12.22786 -12.09090 -12.01328 -11.95159 -11.89705 -11.71930 -11.67297 -11.54124 -11.36228 -11.24593 -11.05963 -10.83518 -10.58251 -10.42423 -9.97905 -8.73962 -8.16255 -5.43892 1.33048 1.39357 1.50109 1.62371 2.26766 2.45430 2.64635 3.03939 3.41757 3.50245 3.57170 3.75595 3.84117 3.90431 3.93616 3.99721 4.17464 4.21672 4.31650 4.37792 4.38110 4.41369 4.44070 4.49396 4.52506 4.54653 4.62683 4.70696 4.73276 4.74462 4.77583 4.80001 4.88719 4.94271 4.95722 5.00026 5.06910 5.07460 5.11418 5.15162 5.17389 5.25848 5.29413 5.31417 5.35586 5.44706 5.47597 5.58278 5.68140 5.96952 6.06780 6.20942 6.63424 7.01183 7.27917 7.68717 8.15559 9.03153 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012167 B = 0.005172 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.809385 B = 5412.764258 C = 6801.974521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.401 6.401 3 C 0.070 3.930 4 C -0.083 4.083 5 C 0.524 3.476 6 O -0.582 6.582 7 N -0.713 5.713 8 C 0.136 3.864 9 C -0.083 4.083 10 C -0.118 4.118 11 C -0.095 4.095 12 C -0.125 4.125 13 C 0.135 3.865 14 N -0.610 5.610 15 C -0.259 4.259 16 H 0.046 0.954 17 C 0.003 3.997 18 N -0.928 5.928 19 Si 0.902 3.098 20 H -0.241 1.241 21 H -0.305 1.305 22 H -0.302 1.302 23 C 0.155 3.845 24 C -0.101 4.101 25 C -0.124 4.124 26 C -0.115 4.115 27 C -0.102 4.102 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.411 0.589 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.023 0.977 44 H 0.053 0.947 45 H 0.262 0.738 46 H 0.055 0.945 47 H 0.005 0.995 48 H 0.059 0.941 49 H 0.098 0.902 50 H 0.089 0.911 51 H 0.046 0.954 52 H 0.089 0.911 53 H 0.059 0.941 54 H 0.095 0.905 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.900 11.097 -2.366 16.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.320 6.320 3 C -0.007 4.007 4 C -0.086 4.086 5 C 0.311 3.689 6 O -0.463 6.463 7 N -0.366 5.366 8 C 0.011 3.989 9 C -0.085 4.085 10 C -0.175 4.175 11 C -0.133 4.133 12 C -0.163 4.163 13 C 0.010 3.990 14 N -0.334 5.334 15 C -0.388 4.388 16 H 0.064 0.936 17 C -0.195 4.195 18 N -0.572 5.572 19 Si 0.730 3.270 20 H -0.165 1.165 21 H -0.233 1.233 22 H -0.229 1.229 23 C 0.030 3.970 24 C -0.139 4.139 25 C -0.162 4.162 26 C -0.152 4.152 27 C -0.140 4.140 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.251 0.749 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.041 0.959 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.023 0.977 48 H 0.077 0.923 49 H 0.116 0.884 50 H 0.107 0.893 51 H 0.065 0.935 52 H 0.107 0.893 53 H 0.078 0.922 54 H 0.113 0.887 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.430 11.293 -1.944 16.906 hybrid contribution -1.601 0.365 0.461 1.706 sum 10.829 11.658 -1.483 15.981 Atomic orbital electron populations 1.22915 0.80387 1.02182 1.00681 1.87723 1.20274 1.28495 1.95490 1.22695 0.90860 0.85008 1.02112 1.21784 0.94484 0.98043 0.94326 1.20676 0.79920 0.81500 0.86807 1.90604 1.36848 1.69206 1.49611 1.46322 1.47250 1.15677 1.27320 1.21333 0.98735 0.91118 0.87687 1.21213 0.95731 0.93848 0.97751 1.21624 1.00371 1.00202 0.95346 1.21404 1.00586 0.95584 0.95711 1.21918 0.95241 0.96870 1.02305 1.21193 0.94419 0.94178 0.89217 1.44375 1.42079 1.15839 1.31100 1.18680 1.07049 0.94446 1.18637 0.93615 1.25737 0.97254 0.99843 0.96627 1.70054 1.32947 1.38645 1.15536 0.86700 0.77550 0.83532 0.79169 1.16545 1.23337 1.22933 1.21182 0.91518 0.86392 0.97938 1.22532 0.96840 0.99569 0.94979 1.22381 0.95597 0.96191 1.01998 1.22063 0.97134 0.96709 0.99308 1.22078 0.97650 0.92833 1.01411 0.91059 0.91785 0.94436 0.93476 0.88965 0.74902 0.92933 0.90843 0.94611 0.91651 0.92733 0.92174 0.89999 0.89663 0.92058 0.95934 0.92823 0.92848 0.92674 0.97735 0.92253 0.88359 0.89280 0.93546 0.89274 0.92243 0.88692 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.10 9.08 113.37 1.03 2.13 16 2 O -0.40 -12.64 7.91 -148.98 -1.18 -13.82 16 3 C 0.07 1.71 4.71 71.98 0.34 2.05 16 4 C -0.08 -2.07 0.62 -51.85 -0.03 -2.10 16 5 C 0.52 16.85 6.30 87.65 0.55 17.41 16 6 O -0.58 -21.58 15.44 -3.04 -0.05 -21.63 16 7 N -0.71 -23.57 4.52 -463.07 -2.09 -25.66 16 8 C 0.14 4.35 4.58 86.38 0.40 4.74 16 9 C -0.08 -2.78 0.53 -52.09 -0.03 -2.81 16 10 C -0.12 -3.96 7.82 71.98 0.56 -3.40 16 11 C -0.09 -2.70 4.71 30.63 0.14 -2.56 16 12 C -0.12 -3.72 5.74 30.67 0.18 -3.55 16 13 C 0.13 5.16 6.52 86.36 0.56 5.73 16 14 N -0.61 -28.09 2.06 -699.11 -1.44 -29.54 16 15 C -0.26 -14.23 9.86 84.03 0.83 -13.40 16 16 H 0.05 2.77 8.06 -2.91 -0.02 2.75 16 17 C 0.00 0.18 4.99 84.86 0.42 0.60 16 18 N -0.93 -54.44 13.97 21.65 0.30 -54.13 16 19 Si 0.90 44.16 22.47 68.60 1.54 45.70 16 20 H -0.24 -10.75 4.51 99.48 0.45 -10.30 16 21 H -0.31 -14.99 7.11 99.48 0.71 -14.28 16 22 H -0.30 -15.62 7.11 99.48 0.71 -14.91 16 23 C 0.16 6.52 2.71 86.37 0.23 6.75 16 24 C -0.10 -2.22 5.59 31.89 0.18 -2.04 16 25 C -0.12 -2.41 6.61 31.67 0.21 -2.20 16 26 C -0.11 -2.04 6.80 31.32 0.21 -1.83 16 27 C -0.10 -2.11 5.73 31.32 0.18 -1.93 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 2.51 5.97 -2.39 -0.01 2.50 16 30 H 0.04 1.18 7.24 -2.38 -0.02 1.16 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.41 14.43 3.95 -92.71 -0.37 14.06 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.03 1.27 6.87 -2.39 -0.02 1.25 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.05 2.06 5.97 -2.39 -0.01 2.04 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.06 1.92 6.34 -2.39 -0.02 1.90 16 43 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 45 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 46 H 0.05 2.54 4.69 -2.39 -0.01 2.53 16 47 H 0.00 0.21 7.45 -2.39 -0.02 0.19 16 48 H 0.06 1.50 7.81 -2.39 -0.02 1.48 16 49 H 0.10 1.77 8.06 -2.39 -0.02 1.75 16 50 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 51 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 52 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 53 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 54 H 0.09 1.46 7.84 -2.38 -0.02 1.44 16 55 H 0.06 1.63 6.89 -2.39 -0.02 1.61 16 Total: -1.00 -66.30 395.34 3.28 -63.02 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: 0.23 Total: 32.46 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 5.97 Total: 3.60 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -3.23 Total: -109.33 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -1.23 Total: -35.45 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.54 Total: 45.70 kcal Total: -66.30 3.28 -63.02 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671888040.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.704 kcal (2) G-P(sol) polarization free energy of solvation -66.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.67 seconds