Wall clock time and date at job start Tue Mar 31 2020 21:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47047 * 2 1 4 4 C 1.53000 * 109.47323 * 120.00380 * 2 1 3 5 5 C 1.52994 * 109.46802 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47439 * 299.99678 * 5 4 2 7 7 C 1.53002 * 109.47229 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46831 * 175.00328 * 7 6 5 9 9 O 1.21279 * 120.00141 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99840 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00088 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47397 * 179.97438 * 11 10 8 13 13 O 1.42894 * 110.63713 * 61.85514 * 12 11 10 14 14 C 1.55156 * 110.72209 * 184.99870 * 12 11 10 15 15 C 1.54910 * 101.58060 * 153.86527 * 14 12 11 16 16 N 1.47430 * 104.83316 * 322.99065 * 15 14 12 17 17 C 1.36933 * 125.65045 * 204.09227 * 16 15 14 18 18 H 1.08001 * 120.00338 * 168.09700 * 17 16 15 19 19 C 1.38816 * 119.99913 * 348.10149 * 17 16 15 20 20 N 1.31626 * 119.99833 * 325.97513 * 19 17 16 21 21 Si 1.86792 * 120.00087 * 145.97854 * 19 17 16 22 22 H 1.48498 * 109.47124 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47530 * 119.99813 * 21 19 17 24 24 H 1.48510 * 109.47222 * 239.99984 * 21 19 17 25 25 C 1.47023 * 108.70307 * 24.35552 * 16 15 14 26 26 C 1.53000 * 109.46860 * 60.00358 * 6 5 4 27 27 C 1.52997 * 109.47323 * 300.00053 * 26 6 5 28 28 H 1.09002 * 109.47358 * 299.99485 * 1 2 3 29 29 H 1.08997 * 109.47669 * 59.99854 * 1 2 3 30 30 H 1.09001 * 109.47081 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47236 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47284 * 300.01025 * 3 2 1 33 33 H 1.09005 * 109.46690 * 60.00594 * 3 2 1 34 34 H 1.09004 * 109.46739 * 59.99703 * 4 2 1 35 35 H 1.08999 * 109.46733 * 299.99896 * 4 2 1 36 36 H 1.09003 * 109.46767 * 179.97438 * 5 4 2 37 37 H 1.08995 * 109.47614 * 60.00576 * 5 4 2 38 38 H 1.09001 * 109.47042 * 300.00435 * 6 5 4 39 39 H 1.09005 * 109.46860 * 55.00715 * 7 6 5 40 40 H 1.08998 * 109.47362 * 295.00137 * 7 6 5 41 41 H 0.97000 * 120.00109 * 359.97438 * 10 8 7 42 42 H 1.09005 * 109.47446 * 59.99906 * 11 10 8 43 43 H 1.09003 * 109.47349 * 299.99429 * 11 10 8 44 44 H 0.96696 * 114.00525 * 303.14216 * 13 12 11 45 45 H 1.09004 * 111.00136 * 35.79205 * 14 12 11 46 46 H 1.08996 * 111.00632 * 271.93968 * 14 12 11 47 47 H 1.09004 * 110.36734 * 204.15563 * 15 14 12 48 48 H 1.08994 * 110.36732 * 81.82842 * 15 14 12 49 49 H 0.96997 * 119.99739 * 354.25145 * 20 19 17 50 50 H 1.08995 * 109.88212 * 118.12593 * 25 16 15 51 51 H 1.08998 * 109.88314 * 239.29581 * 25 16 15 52 52 H 1.09001 * 109.47230 * 60.00192 * 26 6 5 53 53 H 1.09005 * 109.47413 * 180.02562 * 26 6 5 54 54 H 1.09001 * 109.47081 * 300.00230 * 27 26 6 55 55 H 1.08997 * 109.47916 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2494 6 6 4.0805 -1.4415 0.0001 7 6 5.6105 -1.4414 0.0007 8 6 6.1133 -2.2559 -1.1633 9 8 5.3255 -2.7848 -1.9186 10 7 7.4384 -2.3975 -1.3643 11 6 7.9272 -3.1897 -2.4955 12 6 9.4573 -3.1896 -2.4951 13 8 9.9606 -3.7935 -1.3019 14 6 10.0067 -3.9152 -3.7516 15 6 11.3910 -3.2406 -3.9199 16 7 11.1719 -1.8313 -3.5465 17 6 11.9317 -0.7691 -3.9584 18 1 11.5849 0.2400 -3.7914 19 6 13.1477 -0.9894 -4.5908 20 7 13.8920 -2.0186 -4.2456 21 14 13.7276 0.1749 -5.9315 22 1 12.7158 1.2434 -6.1309 23 1 15.0208 0.7856 -5.5316 24 1 13.9069 -0.5790 -7.1983 25 6 10.0064 -1.7559 -2.6535 26 6 3.5705 -0.7202 -1.2491 27 6 2.0405 -0.7208 -1.2494 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6766 -1.7490 1.2491 35 1 1.6767 -0.2075 2.1392 36 1 3.9333 -1.2342 2.1396 37 1 3.9329 0.3070 1.2497 38 1 3.7175 -2.4693 -0.0002 39 1 5.9735 -1.8761 0.9321 40 1 5.9739 -0.4177 -0.0884 41 1 8.0685 -1.9748 -0.7600 42 1 7.5645 -2.7553 -3.4271 43 1 7.5637 -4.2135 -2.4062 44 1 9.6471 -3.3768 -0.4876 45 1 9.3731 -3.7287 -4.6188 46 1 10.1128 -4.9847 -3.5701 47 1 11.7241 -3.3112 -4.9554 48 1 12.1207 -3.7005 -3.2536 49 1 13.6324 -2.5746 -3.4944 50 1 10.3082 -1.3631 -1.6826 51 1 9.2428 -1.1149 -3.0940 52 1 3.9334 0.3076 -1.2488 53 1 3.9338 -1.2340 -2.1392 54 1 1.6775 -1.7486 -1.2497 55 1 1.6770 -0.2065 -2.1390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672048391.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:36 Heat of formation + Delta-G solvation = -120.107408 kcal Electronic energy + Delta-G solvation = -30548.732015 eV Core-core repulsion = 26583.706081 eV Total energy + Delta-G solvation = -3965.025934 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.40003 -40.54608 -39.65353 -37.06856 -35.42182 -35.09120 -34.18146 -31.64011 -31.47527 -30.67846 -29.46307 -28.16416 -27.30176 -25.99906 -24.81348 -23.62511 -22.50828 -21.73732 -21.47327 -21.03221 -19.57677 -19.33982 -18.62345 -17.57071 -16.92398 -16.57343 -16.46675 -16.18749 -15.77862 -15.68837 -15.65901 -15.23750 -15.13084 -14.97137 -14.80679 -14.64155 -14.44564 -14.20558 -13.65091 -13.63160 -13.39620 -13.11691 -12.77396 -12.75441 -12.67943 -12.66734 -12.55208 -12.52974 -12.30875 -12.28005 -12.16553 -11.91198 -11.88583 -11.78404 -11.69032 -11.63600 -11.16922 -11.09081 -10.99677 -10.82884 -10.52883 -10.47298 -10.14078 -9.07768 -8.41957 -5.30932 1.56824 1.64048 1.66868 1.81419 2.12432 2.60946 3.01646 3.14365 3.30415 3.54576 3.69042 3.70774 3.76198 3.79051 3.81332 3.93555 4.12289 4.21727 4.33445 4.35854 4.39571 4.51090 4.54429 4.57378 4.64645 4.67048 4.69751 4.74896 4.78680 4.80783 4.82870 4.86485 4.87546 4.92289 4.99971 5.04873 5.08242 5.12416 5.15699 5.22520 5.23105 5.25037 5.27230 5.33590 5.37618 5.49827 5.53012 5.63578 5.64597 5.73088 6.25836 6.48098 6.68864 6.83617 7.24580 7.67061 8.25427 8.92307 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018670 B = 0.002113 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.371697 B =13251.100087 C =14029.337629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.065 4.065 3 C -0.143 4.143 4 C -0.106 4.106 5 C -0.112 4.112 6 C -0.065 4.065 7 C -0.133 4.133 8 C 0.510 3.490 9 O -0.575 6.575 10 N -0.723 5.723 11 C 0.120 3.880 12 C 0.127 3.873 13 O -0.555 6.555 14 C -0.111 4.111 15 C 0.151 3.849 16 N -0.622 5.622 17 C -0.353 4.353 18 H 0.062 0.938 19 C -0.076 4.076 20 N -0.935 5.935 21 Si 1.114 2.886 22 H -0.272 1.272 23 H -0.290 1.290 24 H -0.288 1.288 25 C 0.114 3.886 26 C -0.120 4.120 27 C -0.104 4.104 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.410 0.590 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.386 0.614 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.023 0.977 48 H 0.002 0.998 49 H 0.254 0.746 50 H 0.029 0.971 51 H 0.038 0.962 52 H 0.063 0.937 53 H 0.050 0.950 54 H 0.049 0.951 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.610 2.989 13.669 29.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.065 4.065 3 C -0.200 4.200 4 C -0.143 4.143 5 C -0.149 4.149 6 C -0.084 4.084 7 C -0.172 4.172 8 C 0.299 3.701 9 O -0.454 6.454 10 N -0.377 5.377 11 C -0.005 4.005 12 C 0.085 3.915 13 O -0.362 6.362 14 C -0.150 4.150 15 C 0.026 3.974 16 N -0.349 5.349 17 C -0.481 4.481 18 H 0.080 0.920 19 C -0.273 4.273 20 N -0.577 5.577 21 Si 0.939 3.061 22 H -0.197 1.197 23 H -0.217 1.217 24 H -0.214 1.214 25 C -0.011 4.011 26 C -0.157 4.157 27 C -0.141 4.141 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.247 0.753 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.236 0.764 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.042 0.958 48 H 0.019 0.981 49 H 0.064 0.936 50 H 0.046 0.954 51 H 0.056 0.944 52 H 0.082 0.918 53 H 0.069 0.931 54 H 0.068 0.932 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.656 2.597 11.568 27.358 hybrid contribution -0.636 0.069 1.509 1.639 sum -25.292 2.666 13.077 28.597 Atomic orbital electron populations 1.21858 0.94446 1.01607 1.01896 1.20550 0.95347 0.95687 0.94944 1.21958 1.01525 0.94927 1.01612 1.21561 0.95479 1.00129 0.97152 1.21621 0.95586 1.01159 0.96563 1.20840 0.92377 0.99643 0.95538 1.21841 0.97334 1.01448 0.96623 1.21356 0.81392 0.80459 0.86886 1.90669 1.55875 1.49870 1.49000 1.45964 1.07694 1.53520 1.30485 1.21681 0.91504 0.96775 0.90507 1.22189 0.90888 0.91807 0.86609 1.86593 1.74272 1.59779 1.15578 1.22756 0.96141 1.00237 0.95830 1.21362 0.94874 0.84629 0.96567 1.44801 1.32316 1.03132 1.54629 1.19959 1.02310 0.86966 1.38908 0.91964 1.27078 0.92452 1.03042 1.04723 1.70852 1.36211 1.21496 1.29127 0.82904 0.75295 0.73771 0.74162 1.19735 1.21725 1.21410 1.22107 0.89852 0.95618 0.93515 1.21688 0.95769 1.00063 0.98179 1.21528 0.95362 0.99735 0.97494 0.91939 0.92941 0.92998 0.92000 0.93308 0.92089 0.92610 0.90964 0.90742 0.90739 0.92395 0.86196 0.87123 0.75338 0.91330 0.90373 0.76445 0.88671 0.88768 0.95842 0.98054 0.93626 0.95353 0.94389 0.91822 0.93087 0.93194 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.47 71.98 0.61 -1.07 16 2 C -0.07 -0.86 0.77 -52.18 -0.04 -0.90 16 3 C -0.14 -1.74 7.78 71.98 0.56 -1.18 16 4 C -0.11 -1.24 4.73 30.59 0.14 -1.10 16 5 C -0.11 -1.25 4.93 30.59 0.15 -1.10 16 6 C -0.06 -1.02 1.84 -10.79 -0.02 -1.04 16 7 C -0.13 -1.84 5.18 29.85 0.15 -1.69 16 8 C 0.51 11.18 7.55 87.66 0.66 11.84 16 9 O -0.57 -17.28 13.97 -3.03 -0.04 -17.32 16 10 N -0.72 -14.90 5.13 -463.05 -2.37 -17.27 16 11 C 0.12 3.12 4.74 86.38 0.41 3.53 16 12 C 0.13 3.96 0.93 -9.60 -0.01 3.95 16 13 O -0.55 -16.66 13.10 -148.98 -1.95 -18.61 16 14 C -0.11 -3.94 6.26 31.99 0.20 -3.74 16 15 C 0.15 7.29 5.33 86.85 0.46 7.75 16 16 N -0.62 -31.69 3.33 -691.94 -2.30 -33.99 16 17 C -0.35 -20.18 9.97 84.04 0.84 -19.35 16 18 H 0.06 3.52 8.02 -2.91 -0.02 3.50 16 19 C -0.08 -4.43 4.95 84.86 0.42 -4.01 16 20 N -0.94 -58.32 12.87 21.65 0.28 -58.04 16 21 Si 1.11 51.67 30.03 68.60 2.06 53.73 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 25 C 0.11 4.44 6.04 86.73 0.52 4.97 16 26 C -0.12 -2.26 4.67 30.59 0.14 -2.11 16 27 C -0.10 -1.78 4.73 30.60 0.14 -1.64 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.76 4.80 -2.39 -0.01 0.75 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.07 0.74 6.43 -2.39 -0.02 0.73 16 38 H 0.06 1.14 7.95 -2.39 -0.02 1.13 16 39 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.41 6.51 7.37 -92.71 -0.68 5.83 16 42 H 0.07 1.96 8.13 -2.38 -0.02 1.94 16 43 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.39 8.00 8.05 -74.06 -0.60 7.41 16 45 H 0.09 3.10 8.04 -2.38 -0.02 3.08 16 46 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 47 H 0.02 1.24 7.82 -2.38 -0.02 1.22 16 48 H 0.00 0.09 7.03 -2.39 -0.02 0.07 16 49 H 0.25 16.25 6.45 -92.71 -0.60 15.65 16 50 H 0.03 1.09 8.07 -2.39 -0.02 1.07 16 51 H 0.04 1.45 7.82 -2.39 -0.02 1.43 16 52 H 0.06 1.11 6.43 -2.39 -0.02 1.09 16 53 H 0.05 1.29 5.95 -2.38 -0.01 1.28 16 54 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 55 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -74.61 410.95 0.78 -73.83 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -0.24 Total: 24.55 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 5.35 Total: -6.88 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -4.40 Total: -109.30 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -1.99 Total: -35.93 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 2.06 Total: 53.73 kcal Total: -74.61 0.78 -73.83 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672048391.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.278 kcal (2) G-P(sol) polarization free energy of solvation -74.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds