Wall clock time and date at job start Tue Mar 31 2020 21:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00355 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00448 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46932 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.46955 * 55.00453 * 11 10 9 13 13 C 1.53005 * 109.46851 * 174.99869 * 11 10 9 14 14 C 1.53004 * 109.46851 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47252 * 300.00516 * 14 13 11 16 16 H 1.08998 * 109.46866 * 299.99898 * 15 14 13 17 17 N 1.46499 * 109.47126 * 179.97438 * 15 14 13 18 18 C 1.34780 * 120.00021 * 154.99667 * 17 15 14 19 19 O 1.21288 * 119.99696 * 0.02562 * 18 17 15 20 20 C 1.50694 * 120.00199 * 180.02562 * 18 17 15 21 21 C 1.52994 * 109.47267 * 180.02562 * 20 18 17 22 22 C 1.53004 * 109.47329 * 179.97438 * 21 20 18 23 23 C 1.53182 * 109.54317 * 294.55642 * 22 21 20 24 24 C 1.53092 * 109.16468 * 183.14948 * 23 22 21 25 25 O 1.42907 * 109.41212 * 57.60740 * 24 23 22 26 26 C 1.42900 * 114.09813 * 298.84146 * 25 24 23 27 27 C 1.53093 * 109.41506 * 61.16203 * 26 25 24 28 28 C 1.52999 * 109.47141 * 59.99827 * 15 14 13 29 29 C 1.52997 * 109.47498 * 299.99839 * 28 15 14 30 30 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47306 * 300.00481 * 10 9 7 33 33 H 1.08997 * 109.46860 * 60.00305 * 10 9 7 34 34 H 1.08992 * 109.47265 * 300.00192 * 13 11 10 35 35 H 1.09000 * 109.46708 * 60.00933 * 13 11 10 36 36 H 1.08998 * 109.47102 * 60.00269 * 14 13 11 37 37 H 1.08998 * 109.47207 * 180.02562 * 14 13 11 38 38 H 0.96998 * 120.00267 * 335.00648 * 17 15 14 39 39 H 1.09002 * 109.46873 * 300.00110 * 20 18 17 40 40 H 1.08995 * 109.47223 * 59.99704 * 20 18 17 41 41 H 1.08993 * 109.47404 * 299.99695 * 21 20 18 42 42 H 1.08999 * 109.47432 * 60.00138 * 21 20 18 43 43 H 1.09002 * 109.53881 * 54.81975 * 22 21 20 44 44 H 1.09003 * 109.52098 * 303.05834 * 23 22 21 45 45 H 1.09004 * 109.52208 * 63.24584 * 23 22 21 46 46 H 1.09001 * 109.47797 * 297.62949 * 24 23 22 47 47 H 1.08990 * 109.48293 * 177.59226 * 24 23 22 48 48 H 1.09001 * 109.48303 * 301.17668 * 26 25 24 49 49 H 1.09000 * 109.49043 * 181.14567 * 26 25 24 50 50 H 1.08999 * 109.52575 * 182.48627 * 27 26 25 51 51 H 1.08999 * 109.52640 * 62.29093 * 27 26 25 52 52 H 1.08998 * 109.47183 * 60.00264 * 28 15 14 53 53 H 1.09006 * 109.46848 * 179.97438 * 28 15 14 54 54 H 1.08998 * 109.47251 * 300.00383 * 29 28 15 55 55 H 1.08998 * 109.47531 * 179.97438 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.3789 -4.7127 -0.8419 13 6 1.8248 -6.1411 -0.1277 14 6 0.8306 -7.3041 -0.1262 15 6 0.0378 -7.2956 1.1823 16 1 0.7232 -7.4025 2.0231 17 7 -0.9145 -8.4089 1.1835 18 6 -1.3508 -8.9212 2.3513 19 8 -0.9553 -8.4603 3.4012 20 6 -2.3300 -10.0667 2.3526 21 6 -2.6599 -10.4541 3.7954 22 6 -3.6546 -11.6167 3.7967 23 6 -4.9861 -11.1526 3.1983 24 6 -5.9984 -12.2983 3.2757 25 8 -6.1479 -12.7089 4.6364 26 6 -4.9451 -13.1974 5.2338 27 6 -3.8905 -12.0877 5.2350 28 6 -0.7229 -5.9742 1.3092 29 6 0.2712 -4.8112 1.3077 30 1 -0.4850 -0.8401 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6843 -3.7140 -0.8921 33 1 2.6855 -3.7148 0.8878 34 1 2.3899 -6.1469 -1.0597 35 1 2.5098 -6.2481 0.7134 36 1 0.1452 -7.1973 -0.9669 37 1 1.3726 -8.2455 -0.2162 38 1 -1.2310 -8.7773 0.3439 39 1 -3.2433 -9.7645 1.8400 40 1 -1.8903 -10.9211 1.8380 41 1 -1.7469 -10.7561 4.3084 42 1 -3.0998 -9.5996 4.3096 43 1 -3.2542 -12.4396 3.2045 44 1 -5.3600 -10.2973 3.7612 45 1 -4.8376 -10.8675 2.1567 46 1 -5.6427 -13.1386 2.6795 47 1 -6.9603 -11.9603 2.8904 48 1 -4.5757 -14.0494 4.6632 49 1 -5.1481 -13.5070 6.2591 50 1 -2.9585 -12.4713 5.6501 51 1 -4.2423 -11.2513 5.8391 52 1 -1.4083 -5.8674 0.4684 53 1 -1.2881 -5.9684 2.2412 54 1 0.9566 -4.9180 2.1485 55 1 -0.2708 -3.8698 1.3976 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672983406.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:49 Heat of formation + Delta-G solvation = -142.251449 kcal Electronic energy + Delta-G solvation = -29295.742907 eV Core-core repulsion = 25329.756735 eV Total energy + Delta-G solvation = -3965.986171 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.21303 -40.34476 -39.52060 -37.03220 -36.33696 -35.28184 -33.19789 -32.25394 -31.87293 -31.76180 -30.31092 -27.25670 -26.19520 -24.78196 -24.46552 -23.77067 -23.07588 -21.95908 -21.38560 -20.91813 -20.71326 -19.37734 -18.10320 -17.40199 -17.00404 -16.92122 -16.80106 -16.68558 -16.00659 -15.79285 -15.62452 -15.45870 -15.32024 -15.15184 -15.01803 -14.79850 -14.60472 -14.03237 -13.86782 -13.59637 -13.38011 -13.20939 -13.15124 -13.04687 -12.89285 -12.67701 -12.61451 -12.27026 -12.17374 -12.13515 -12.08230 -11.91546 -11.75441 -11.74961 -11.46427 -11.26112 -11.25189 -11.17229 -11.15090 -10.92940 -10.77073 -10.41721 -10.04262 -9.11995 -8.42791 -5.35589 1.56449 1.67027 1.67431 1.83573 2.20301 2.70037 3.01268 3.37229 3.59736 3.64446 3.66576 3.70731 3.79165 3.85562 3.91569 4.03786 4.08426 4.10046 4.25669 4.28273 4.31229 4.38435 4.41881 4.44031 4.47507 4.50829 4.51573 4.61349 4.66963 4.76286 4.80601 4.82581 4.84368 4.89696 4.93691 4.96484 5.02561 5.05517 5.07342 5.12455 5.15445 5.17593 5.20016 5.22532 5.30885 5.40778 5.47292 5.49665 5.55394 5.57160 6.30849 6.46915 6.61334 7.08096 7.32496 7.99117 8.10192 9.09284 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022872 B = 0.001594 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.930266 B =17565.437234 C =18182.445720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.106 4.106 3 Si 1.130 2.870 4 H -0.291 1.291 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.338 4.338 8 H 0.065 0.935 9 N -0.756 5.756 10 C 0.158 3.842 11 C -0.083 4.083 12 H 0.068 0.932 13 C -0.102 4.102 14 C -0.110 4.110 15 C 0.151 3.849 16 H 0.063 0.937 17 N -0.714 5.714 18 C 0.503 3.497 19 O -0.592 6.592 20 C -0.132 4.132 21 C -0.094 4.094 22 C -0.083 4.083 23 C -0.153 4.153 24 C 0.055 3.945 25 O -0.412 6.412 26 C 0.058 3.942 27 C -0.153 4.153 28 C -0.116 4.116 29 C -0.101 4.101 30 H 0.243 0.757 31 H 0.361 0.639 32 H 0.021 0.979 33 H 0.011 0.989 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.417 0.583 39 H 0.115 0.885 40 H 0.124 0.876 41 H 0.057 0.943 42 H 0.045 0.955 43 H 0.091 0.909 44 H 0.055 0.945 45 H 0.095 0.905 46 H 0.065 0.935 47 H 0.098 0.902 48 H 0.064 0.936 49 H 0.097 0.903 50 H 0.081 0.919 51 H 0.055 0.945 52 H 0.072 0.928 53 H 0.043 0.957 54 H 0.049 0.951 55 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.895 -33.598 1.777 34.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.297 4.297 3 Si 0.954 3.046 4 H -0.217 1.217 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.083 0.917 9 N -0.401 5.401 10 C 0.032 3.968 11 C -0.102 4.102 12 H 0.086 0.914 13 C -0.141 4.141 14 C -0.148 4.148 15 C 0.046 3.954 16 H 0.082 0.918 17 N -0.366 5.366 18 C 0.292 3.708 19 O -0.473 6.473 20 C -0.171 4.171 21 C -0.132 4.132 22 C -0.101 4.101 23 C -0.190 4.190 24 C -0.021 4.021 25 O -0.331 6.331 26 C -0.018 4.018 27 C -0.191 4.191 28 C -0.155 4.155 29 C -0.140 4.140 30 H 0.053 0.947 31 H 0.193 0.807 32 H 0.039 0.961 33 H 0.029 0.971 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.255 0.745 39 H 0.134 0.866 40 H 0.142 0.858 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.110 0.890 44 H 0.073 0.927 45 H 0.113 0.887 46 H 0.083 0.917 47 H 0.116 0.884 48 H 0.082 0.918 49 H 0.115 0.885 50 H 0.100 0.900 51 H 0.073 0.927 52 H 0.091 0.909 53 H 0.061 0.939 54 H 0.067 0.933 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.676 -31.655 2.606 32.676 hybrid contribution -0.043 -1.073 -0.006 1.073 sum -7.718 -32.727 2.600 33.725 Atomic orbital electron populations 1.70999 1.07136 1.27756 1.56322 1.27283 0.97151 1.04757 1.00488 0.82612 0.73376 0.71442 0.77180 1.21742 1.20552 1.20098 1.20434 0.92397 0.87349 1.46765 0.91711 1.42608 1.04812 1.02037 1.90610 1.20825 0.93992 0.84775 0.97203 1.21257 0.96822 0.94722 0.97385 0.91396 1.21432 0.97657 0.92004 1.02983 1.21707 0.98066 0.99180 0.95830 1.20822 0.90309 0.84959 0.99356 0.91841 1.46017 1.46231 1.35104 1.09256 1.21511 0.81751 0.84461 0.83113 1.90716 1.59775 1.63458 1.33306 1.21764 0.98967 0.96527 0.99843 1.21284 0.98900 0.97700 0.95315 1.21194 0.94787 0.97768 0.96370 1.22325 0.95218 0.98747 1.02742 1.22741 1.00375 0.96490 0.82513 1.87908 1.33809 1.83738 1.27649 1.22684 0.84690 0.95254 0.99178 1.22249 1.00102 0.99395 0.97356 1.21794 0.97929 0.94375 1.01360 1.21368 0.97750 0.97384 0.97463 0.94717 0.80703 0.96082 0.97082 0.89957 0.91924 0.89727 0.89007 0.74521 0.86650 0.85803 0.92411 0.93649 0.89037 0.92653 0.88683 0.91714 0.88391 0.91811 0.88510 0.89993 0.92653 0.90934 0.93863 0.93258 0.94427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.72 13.70 21.65 0.30 -62.43 16 2 C -0.11 -6.35 5.50 84.86 0.47 -5.89 16 3 Si 1.13 53.30 29.92 68.60 2.05 55.36 16 4 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.34 -19.89 9.99 84.03 0.84 -19.05 16 8 H 0.06 3.71 7.83 -2.91 -0.02 3.69 16 9 N -0.76 -39.98 5.33 -343.44 -1.83 -41.81 16 10 C 0.16 6.60 5.65 86.38 0.49 7.09 16 11 C -0.08 -2.63 2.23 -10.79 -0.02 -2.65 16 12 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 13 C -0.10 -2.33 5.20 30.60 0.16 -2.17 16 14 C -0.11 -1.84 5.39 30.60 0.16 -1.68 16 15 C 0.15 3.25 2.45 44.99 0.11 3.36 16 16 H 0.06 1.71 7.58 -2.39 -0.02 1.70 16 17 N -0.71 -11.36 5.08 -442.53 -2.25 -13.60 16 18 C 0.50 9.98 7.79 87.65 0.68 10.66 16 19 O -0.59 -18.34 15.65 -3.06 -0.05 -18.38 16 20 C -0.13 -1.38 5.47 29.84 0.16 -1.22 16 21 C -0.09 -1.33 3.98 30.59 0.12 -1.21 16 22 C -0.08 -0.82 2.27 -10.67 -0.02 -0.84 16 23 C -0.15 -1.47 5.10 30.69 0.16 -1.31 16 24 C 0.06 0.56 6.84 72.01 0.49 1.05 16 25 O -0.41 -6.42 10.77 -148.98 -1.60 -8.02 16 26 C 0.06 0.64 6.84 72.01 0.49 1.14 16 27 C -0.15 -1.78 5.42 30.68 0.17 -1.61 16 28 C -0.12 -3.14 5.49 30.59 0.17 -2.98 16 29 C -0.10 -3.39 5.08 30.59 0.16 -3.24 16 30 H 0.24 15.60 6.77 -92.70 -0.63 14.97 16 31 H 0.36 19.68 5.68 -92.71 -0.53 19.15 16 32 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.42 3.41 8.60 -92.71 -0.80 2.61 16 39 H 0.12 0.76 6.66 -2.39 -0.02 0.74 16 40 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 42 H 0.04 0.88 8.10 -2.39 -0.02 0.86 16 43 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.09 0.52 6.75 -2.38 -0.02 0.50 16 46 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 53 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 54 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 55 H 0.04 1.50 7.18 -2.39 -0.02 1.48 16 Total: -1.00 -80.12 420.41 1.07 -79.04 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: -0.33 Total: 30.38 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 4.78 Total: -20.53 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -3.78 Total: -117.84 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -1.65 Total: -26.41 kcal Atomic # 14 Polarization: 53.30 SS G_CDS: 2.05 Total: 55.36 kcal Total: -80.12 1.07 -79.04 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672983406.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.207 kcal (2) G-P(sol) polarization free energy of solvation -80.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds