Wall clock time and date at job start Tue Mar 31 2020 22:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 110.56741 * 2 1 4 4 C 1.54480 * 110.50799 * 237.32516 * 2 1 3 5 5 O 1.44419 * 104.80466 * 265.33240 * 4 2 1 6 6 C 1.44427 * 105.27398 * 319.48745 * 5 4 2 7 7 H 1.08993 * 110.46709 * 281.62778 * 6 5 4 8 8 C 1.53005 * 110.36940 * 159.34218 * 6 5 4 9 9 C 1.52992 * 109.47274 * 69.62077 * 8 6 5 10 10 C 1.50700 * 109.47257 * 179.97438 * 9 8 6 11 11 O 1.21279 * 120.00113 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99961 * 180.02562 * 10 9 8 13 13 C 1.46494 * 119.99635 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47001 * 180.02562 * 13 12 10 15 15 H 1.09004 * 110.01421 * 305.06294 * 14 13 12 16 16 C 1.53871 * 110.03555 * 66.44927 * 14 13 12 17 17 C 1.54270 * 106.59601 * 119.28615 * 16 14 13 18 18 C 1.54889 * 104.19728 * 23.61525 * 17 16 14 19 19 H 1.08997 * 110.75663 * 80.37165 * 18 17 16 20 20 N 1.46497 * 110.75550 * 203.55904 * 18 17 16 21 21 C 1.36938 * 119.99732 * 273.54391 * 20 18 17 22 22 H 1.07996 * 119.99980 * 359.97438 * 21 20 18 23 23 C 1.38813 * 119.99847 * 180.02562 * 21 20 18 24 24 N 1.31617 * 120.00036 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99826 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47157 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47027 * 119.99920 * 25 23 21 28 28 H 1.48499 * 109.46705 * 239.99947 * 25 23 21 29 29 C 1.54263 * 110.03431 * 183.62177 * 14 13 12 30 30 C 1.54480 * 104.80166 * 40.51380 * 6 5 4 31 31 H 1.09006 * 109.47010 * 297.31482 * 1 2 3 32 32 H 1.09000 * 109.47334 * 57.31603 * 1 2 3 33 33 H 1.09002 * 109.47437 * 177.31986 * 1 2 3 34 34 H 1.08992 * 109.47318 * 182.68195 * 3 2 1 35 35 H 1.09009 * 109.47201 * 302.68858 * 3 2 1 36 36 H 1.09007 * 109.46837 * 62.68139 * 3 2 1 37 37 H 1.09002 * 110.37279 * 24.16368 * 4 2 1 38 38 H 1.09004 * 110.37238 * 146.38506 * 4 2 1 39 39 H 1.09004 * 109.47166 * 309.61703 * 8 6 5 40 40 H 1.09005 * 109.46988 * 189.62091 * 8 6 5 41 41 H 1.09004 * 109.47330 * 59.99726 * 9 8 6 42 42 H 1.08997 * 109.47279 * 300.00213 * 9 8 6 43 43 H 0.96995 * 120.00015 * 359.72695 * 12 10 9 44 44 H 1.09005 * 109.47306 * 299.99972 * 13 12 10 45 45 H 1.09002 * 109.47518 * 60.00210 * 13 12 10 46 46 H 1.08999 * 110.03801 * 238.57228 * 16 14 13 47 47 H 1.08999 * 110.03020 * 0.02562 * 16 14 13 48 48 H 1.09007 * 110.48164 * 142.29326 * 17 16 14 49 49 H 1.08998 * 110.48637 * 264.93343 * 17 16 14 50 50 H 0.96996 * 120.00049 * 93.54414 * 20 18 17 51 51 H 0.97000 * 119.99635 * 180.02562 * 24 23 21 52 52 H 1.08999 * 110.48571 * 335.78158 * 29 14 13 53 53 H 1.08997 * 110.49082 * 98.42140 * 29 14 13 54 54 H 1.09004 * 110.51143 * 94.66491 * 30 6 5 55 55 H 1.08999 * 110.50993 * 217.37616 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0675 1.4325 0.0000 4 6 2.0712 -0.7811 -1.2179 5 8 2.3069 -2.1176 -0.7241 6 6 2.8757 -1.9422 0.5918 7 1 3.9304 -1.6771 0.5188 8 6 2.7041 -3.2169 1.4205 9 6 3.6047 -4.3173 0.8559 10 6 3.4361 -5.5727 1.6725 11 8 2.6707 -5.5860 2.6131 12 7 4.1361 -6.6806 1.3574 13 6 3.9717 -7.9010 2.1509 14 6 4.8734 -9.0011 1.5871 15 1 4.6666 -9.1461 0.5268 16 6 6.3519 -8.6260 1.7892 17 6 6.9692 -9.7286 2.6743 18 6 6.0525 -10.9561 2.4466 19 1 6.3081 -11.4618 1.5155 20 7 6.1354 -11.8830 3.5781 21 6 7.1146 -12.8397 3.6091 22 1 7.8255 -12.9112 2.7992 23 6 7.1929 -13.7183 4.6809 24 7 6.3262 -13.6314 5.6677 25 14 8.5283 -15.0238 4.7228 26 1 9.3685 -14.9119 3.5035 27 1 9.3745 -14.8278 5.9273 28 1 7.9031 -16.3699 4.7707 29 6 4.6438 -10.3185 2.3563 30 6 2.0714 -0.7814 1.2179 31 1 -0.3633 0.4716 0.9131 32 1 -0.3634 0.5549 -0.8649 33 1 -0.3634 -1.0265 -0.0481 34 1 3.1561 1.4121 -0.0481 35 1 1.6755 1.9677 -0.8650 36 1 1.7535 1.9383 0.9131 37 1 1.3309 -0.7973 -2.0178 38 1 3.0012 -0.3359 -1.5716 39 1 1.6642 -3.5408 1.3778 40 1 2.9802 -3.0171 2.4559 41 1 4.6446 -3.9934 0.8986 42 1 3.3287 -4.5171 -0.1795 43 1 4.7453 -6.6711 0.6027 44 1 4.2473 -7.7011 3.1864 45 1 2.9320 -8.2253 2.1077 46 1 6.8629 -8.5898 0.8271 47 1 6.4272 -7.6605 2.2893 48 1 7.9878 -9.9486 2.3545 49 1 6.9535 -9.4298 3.7224 50 1 5.4967 -11.8190 4.3053 51 1 6.3812 -14.2451 6.4168 52 1 4.2525 -10.1150 3.3530 53 1 3.9652 -10.9691 1.8046 54 1 1.2490 -1.1678 1.8202 55 1 2.7220 -0.1472 1.8201 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689015612.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:24 Heat of formation + Delta-G solvation = -130.923620 kcal Electronic energy + Delta-G solvation = -28859.383967 eV Core-core repulsion = 24893.889008 eV Total energy + Delta-G solvation = -3965.494960 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.10179 -40.61903 -39.40981 -36.35304 -35.69571 -34.95783 -34.42457 -32.58854 -30.78570 -29.88211 -28.74107 -28.23213 -26.93187 -26.19111 -25.11751 -24.36180 -22.06297 -21.59312 -20.96636 -20.56560 -20.22645 -19.13869 -18.02448 -17.29959 -17.26716 -16.76510 -16.57148 -16.44115 -16.34383 -15.99584 -15.59935 -15.26092 -14.93451 -14.70623 -14.55131 -14.29692 -14.22639 -13.98235 -13.83848 -13.59503 -13.56581 -13.27515 -12.98451 -12.97241 -12.69203 -12.67088 -12.35911 -12.34697 -12.18808 -12.08318 -12.03957 -11.96680 -11.77144 -11.64162 -11.59640 -11.52841 -11.52289 -11.41572 -11.24294 -10.90367 -10.80312 -10.57583 -10.05337 -8.97956 -7.94090 -5.22283 1.46899 1.47696 1.57741 1.68997 2.24363 2.56780 2.98015 3.38525 3.50105 3.66667 3.71219 3.76859 3.80344 3.88210 3.92910 3.97199 4.16015 4.30227 4.31915 4.36562 4.40260 4.46439 4.50933 4.58347 4.62754 4.66107 4.70643 4.74374 4.77433 4.79862 4.80349 4.81788 4.84306 4.93726 4.95783 5.04065 5.07610 5.09076 5.12115 5.14287 5.20896 5.23395 5.30439 5.32461 5.40013 5.40855 5.48878 5.50910 5.57670 5.64622 5.97251 6.28911 6.61705 7.31613 7.33961 8.12629 8.34214 9.30001 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.041487 B = 0.001412 C = 0.001400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.748232 B =19832.129377 C =19992.984816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 C -0.136 4.136 4 C 0.048 3.952 5 O -0.391 6.391 6 C 0.077 3.923 7 H 0.086 0.914 8 C -0.095 4.095 9 C -0.128 4.128 10 C 0.505 3.495 11 O -0.593 6.593 12 N -0.715 5.715 13 C 0.133 3.867 14 C -0.083 4.083 15 H 0.103 0.897 16 C -0.107 4.107 17 C -0.139 4.139 18 C 0.163 3.837 19 H 0.053 0.947 20 N -0.737 5.737 21 C -0.237 4.237 22 H 0.077 0.923 23 C -0.079 4.079 24 N -0.973 5.973 25 Si 0.972 3.028 26 H -0.264 1.264 27 H -0.295 1.295 28 H -0.294 1.294 29 C -0.116 4.116 30 C -0.146 4.146 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.120 0.880 42 H 0.110 0.890 43 H 0.417 0.583 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.050 0.950 49 H 0.037 0.963 50 H 0.371 0.629 51 H 0.250 0.750 52 H 0.052 0.948 53 H 0.069 0.931 54 H 0.068 0.932 55 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.248 32.902 -17.999 38.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 C -0.193 4.193 4 C -0.028 4.028 5 O -0.310 6.310 6 C 0.020 3.980 7 H 0.104 0.896 8 C -0.133 4.133 9 C -0.168 4.168 10 C 0.293 3.707 11 O -0.474 6.474 12 N -0.368 5.368 13 C 0.009 3.991 14 C -0.102 4.102 15 H 0.121 0.879 16 C -0.145 4.145 17 C -0.179 4.179 18 C 0.055 3.945 19 H 0.071 0.929 20 N -0.376 5.376 21 C -0.369 4.369 22 H 0.095 0.905 23 C -0.271 4.271 24 N -0.624 5.624 25 Si 0.801 3.199 26 H -0.188 1.188 27 H -0.223 1.223 28 H -0.221 1.221 29 C -0.155 4.155 30 C -0.183 4.183 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.138 0.862 42 H 0.128 0.872 43 H 0.254 0.746 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.106 0.894 47 H 0.086 0.914 48 H 0.069 0.931 49 H 0.056 0.944 50 H 0.202 0.798 51 H 0.058 0.942 52 H 0.071 0.929 53 H 0.088 0.912 54 H 0.087 0.913 55 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.673 32.567 -17.525 37.770 hybrid contribution 0.513 -1.040 0.852 1.439 sum -7.160 31.527 -16.673 36.376 Atomic orbital electron populations 1.21841 0.93598 1.01531 1.02433 1.21953 0.96648 0.96658 0.94711 1.21828 1.01143 0.93660 1.02644 1.23674 1.00687 0.82116 0.96357 1.89115 1.83379 1.27152 1.31375 1.23068 0.97795 0.94413 0.82715 0.89639 1.21342 0.99965 0.93051 0.98901 1.21648 1.03616 0.91030 1.00476 1.21387 0.78981 0.85933 0.84365 1.90696 1.39212 1.85347 1.32124 1.45951 1.45501 1.11073 1.34238 1.21296 0.99231 0.84024 0.94585 1.21822 0.94927 0.92590 1.00901 0.87906 1.22135 0.94184 0.97732 1.00403 1.22898 0.99359 0.96901 0.98770 1.21474 0.93903 0.89160 0.89986 0.92858 1.42623 1.35605 1.36564 1.22795 1.19698 1.06490 1.07221 1.03496 0.90503 1.25569 1.01763 1.02555 0.97219 1.69835 1.39941 1.41295 1.11299 0.85086 0.78635 0.78672 0.77475 1.18814 1.22258 1.22150 1.22474 0.97018 0.96039 1.00008 1.23158 1.00410 0.96800 0.97950 0.92200 0.91537 0.93532 0.91842 0.91639 0.92022 0.88859 0.91065 0.92659 0.90418 0.86211 0.87155 0.74554 0.93421 0.92604 0.89416 0.91391 0.93066 0.94395 0.79783 0.94155 0.92890 0.91224 0.91342 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.29 71.98 0.60 -0.77 16 2 C -0.10 -0.94 1.05 -51.17 -0.05 -0.99 16 3 C -0.14 -0.85 8.31 71.98 0.60 -0.25 16 4 C 0.05 0.51 6.74 72.49 0.49 1.00 16 5 O -0.39 -6.15 11.13 -148.98 -1.66 -7.81 16 6 C 0.08 0.98 3.25 31.10 0.10 1.09 16 7 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 8 C -0.09 -1.55 4.13 30.59 0.13 -1.42 16 9 C -0.13 -1.81 5.64 29.85 0.17 -1.65 16 10 C 0.51 11.20 7.83 87.66 0.69 11.88 16 11 O -0.59 -19.10 15.98 -3.03 -0.05 -19.15 16 12 N -0.72 -13.31 5.29 -463.05 -2.45 -15.76 16 13 C 0.13 3.19 4.70 86.38 0.41 3.60 16 14 C -0.08 -1.89 2.98 -10.07 -0.03 -1.92 16 15 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 16 C -0.11 -2.45 6.13 31.32 0.19 -2.26 16 17 C -0.14 -4.72 6.51 31.67 0.21 -4.51 16 18 C 0.16 6.33 3.53 46.28 0.16 6.50 16 19 H 0.05 2.06 8.12 -2.39 -0.02 2.04 16 20 N -0.74 -37.80 5.26 -316.85 -1.67 -39.46 16 21 C -0.24 -13.31 9.98 84.03 0.84 -12.47 16 22 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 23 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 24 N -0.97 -60.82 13.06 21.65 0.28 -60.53 16 25 Si 0.97 46.67 29.55 68.60 2.03 48.70 16 26 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 28 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 29 C -0.12 -3.67 5.97 31.67 0.19 -3.48 16 30 C -0.15 -1.63 5.92 31.61 0.19 -1.44 16 31 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.34 8.08 -2.39 -0.02 0.32 16 35 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 36 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 37 H 0.09 0.90 7.87 -2.39 -0.02 0.88 16 38 H 0.07 0.58 7.82 -2.39 -0.02 0.56 16 39 H 0.05 1.17 8.10 -2.38 -0.02 1.15 16 40 H 0.08 1.35 8.10 -2.38 -0.02 1.33 16 41 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.11 1.37 8.01 -2.39 -0.02 1.35 16 43 H 0.42 4.89 8.31 -92.71 -0.77 4.12 16 44 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 45 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.07 1.48 7.58 -2.39 -0.02 1.46 16 48 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 49 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.37 20.65 7.73 -92.71 -0.72 19.93 16 51 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 52 H 0.05 1.85 7.74 -2.39 -0.02 1.83 16 53 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 54 H 0.07 0.92 7.46 -2.38 -0.02 0.91 16 55 H 0.09 0.78 7.73 -2.39 -0.02 0.76 16 Total: -1.00 -73.80 430.85 1.18 -72.63 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.64 Total: 32.65 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 5.33 Total: -11.25 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -3.83 Total: -115.76 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -1.71 Total: -26.96 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -73.80 1.18 -72.63 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689015612.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.298 kcal (2) G-P(sol) polarization free energy of solvation -73.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds