Wall clock time and date at job start Tue Mar 31 2020 22:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 110.80296 * 2 1 4 4 C 1.54987 * 110.90939 * 236.33325 * 2 1 3 5 5 O 1.44379 * 103.49051 * 204.77788 * 4 2 1 6 6 C 1.43748 * 106.97755 * 40.06031 * 5 4 2 7 7 H 1.08993 * 110.00361 * 92.97986 * 6 5 4 8 8 C 1.52996 * 109.87642 * 214.06146 * 6 5 4 9 9 C 1.52996 * 109.47674 * 292.82750 * 8 6 5 10 10 C 1.50691 * 109.47334 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00576 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00021 * 179.97438 * 10 9 8 13 13 C 1.46505 * 120.00266 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47261 * 180.02562 * 13 12 10 15 15 H 1.08996 * 110.43113 * 303.91068 * 14 13 12 16 16 C 1.54265 * 110.48625 * 66.45782 * 14 13 12 17 17 C 1.53873 * 106.59997 * 142.42424 * 16 14 13 18 18 C 1.54268 * 106.59703 * 359.97438 * 17 16 14 19 19 H 1.09002 * 110.48435 * 95.07241 * 18 17 16 20 20 N 1.46498 * 110.48496 * 217.58415 * 18 17 16 21 21 C 1.36944 * 119.99772 * 271.75678 * 20 18 17 22 22 H 1.07996 * 120.00030 * 0.02562 * 21 20 18 23 23 C 1.38814 * 119.99866 * 180.02562 * 21 20 18 24 24 N 1.31612 * 120.00179 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99861 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47077 * 89.99957 * 25 23 21 27 27 H 1.48500 * 109.46834 * 210.00071 * 25 23 21 28 28 H 1.48501 * 109.47333 * 329.99700 * 25 23 21 29 29 C 1.54888 * 110.59749 * 181.29941 * 14 13 12 30 30 C 1.54097 * 107.28874 * 333.48502 * 6 5 4 31 31 H 1.09004 * 109.47247 * 296.37534 * 1 2 3 32 32 H 1.08994 * 109.46785 * 56.37490 * 1 2 3 33 33 H 1.08996 * 109.46766 * 176.37508 * 1 2 3 34 34 H 1.09001 * 109.47229 * 183.62908 * 3 2 1 35 35 H 1.09004 * 109.47078 * 303.62941 * 3 2 1 36 36 H 1.09001 * 109.47365 * 63.62819 * 3 2 1 37 37 H 1.09009 * 110.61933 * 323.27694 * 4 2 1 38 38 H 1.08996 * 110.62087 * 86.27488 * 4 2 1 39 39 H 1.09001 * 109.46742 * 172.82744 * 8 6 5 40 40 H 1.09007 * 109.47267 * 52.83308 * 8 6 5 41 41 H 1.09001 * 109.47041 * 60.00177 * 9 8 6 42 42 H 1.08997 * 109.47043 * 300.00622 * 9 8 6 43 43 H 0.97002 * 119.99869 * 0.02562 * 12 10 9 44 44 H 1.09001 * 109.46839 * 60.00233 * 13 12 10 45 45 H 1.09007 * 109.47265 * 300.00738 * 13 12 10 46 46 H 1.08993 * 110.03585 * 23.12920 * 16 14 13 47 47 H 1.09005 * 110.02598 * 261.70486 * 16 14 13 48 48 H 1.09002 * 110.03017 * 240.71676 * 17 16 14 49 49 H 1.08992 * 110.03600 * 119.28231 * 17 16 14 50 50 H 0.96996 * 120.00670 * 91.76232 * 20 18 17 51 51 H 0.96999 * 120.00078 * 179.97438 * 24 23 21 52 52 H 1.08992 * 110.76047 * 85.00814 * 29 14 13 53 53 H 1.09000 * 110.75534 * 321.63383 * 29 14 13 54 54 H 1.09008 * 110.48412 * 120.70485 * 30 6 5 55 55 H 1.08999 * 110.48871 * 243.21704 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0734 1.4303 0.0000 4 6 2.0831 -0.8026 -1.2050 5 8 3.3941 -1.2145 -0.7620 6 6 3.2718 -1.5879 0.6207 7 1 3.0838 -2.6584 0.7026 8 6 4.5543 -1.2262 1.3726 9 6 5.7040 -2.1021 0.8709 10 6 6.9670 -1.7462 1.6119 11 8 6.9493 -0.8778 2.4584 12 7 8.1161 -2.3936 1.3348 13 6 9.3439 -2.0480 2.0556 14 6 10.4936 -2.9239 1.5538 15 1 10.2408 -3.9791 1.6563 16 6 10.8267 -2.5884 0.0854 17 6 12.3564 -2.6833 -0.0511 18 6 12.8996 -3.0724 1.3393 19 1 13.0354 -4.1518 1.4074 20 7 14.1622 -2.3801 1.6086 21 6 15.3481 -2.9414 1.2163 22 1 15.3525 -3.8942 0.7080 23 6 16.5446 -2.2856 1.4720 24 7 17.6844 -2.8252 1.0954 25 14 16.5370 -0.6377 2.3518 26 1 16.6320 -0.8586 3.8172 27 1 17.6960 0.1716 1.8970 28 1 15.2769 0.0838 2.0407 29 6 11.7992 -2.6022 2.3225 30 6 2.0825 -0.8008 1.2042 31 1 -0.3634 0.4566 0.9207 32 1 -0.3633 0.5691 -0.8557 33 1 -0.3633 -1.0256 -0.0650 34 1 3.1612 1.4057 -0.0650 35 1 1.6704 1.9721 -0.8557 36 1 1.7757 1.9321 0.9207 37 1 1.4562 -1.6709 -1.4081 38 1 2.1582 -0.1673 -2.0874 39 1 4.4091 -1.3934 2.4399 40 1 4.7940 -0.1772 1.1985 41 1 5.8492 -1.9349 -0.1964 42 1 5.4643 -3.1510 1.0450 43 1 8.1303 -3.0884 0.6581 44 1 9.1980 -2.2155 3.1227 45 1 9.5841 -0.9990 1.8820 46 1 10.4925 -1.5786 -0.1521 47 1 10.3472 -3.3068 -0.5796 48 1 12.7647 -1.7193 -0.3547 49 1 12.6194 -3.4476 -0.7824 50 1 14.1583 -1.5241 2.0649 51 1 18.5204 -2.3668 1.2738 52 1 11.8475 -3.1652 3.2545 53 1 11.8824 -1.5320 2.5117 54 1 1.3246 -1.4837 1.5882 55 1 2.4206 -0.1262 1.9908 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689015613.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:29 Heat of formation + Delta-G solvation = -127.891029 kcal Electronic energy + Delta-G solvation = -29025.525856 eV Core-core repulsion = 25060.162400 eV Total energy + Delta-G solvation = -3965.363457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.12447 -40.61089 -39.45904 -36.43924 -35.61282 -34.97836 -34.42825 -33.01497 -30.91256 -29.91228 -28.96600 -28.24277 -27.06477 -26.12598 -24.80401 -24.24141 -22.01686 -21.72857 -21.05976 -20.56095 -20.30755 -19.58387 -18.03135 -17.37676 -17.00382 -16.86893 -16.56501 -16.49330 -16.34713 -16.00098 -15.87292 -15.08292 -14.93472 -14.69767 -14.60899 -14.33431 -14.20694 -14.11006 -13.89909 -13.82332 -13.62763 -13.24716 -13.16134 -12.99818 -12.73487 -12.68209 -12.40525 -12.29588 -12.19776 -12.13781 -12.05122 -11.94070 -11.84599 -11.72953 -11.62601 -11.55078 -11.52431 -11.37511 -11.22166 -10.96390 -10.79805 -10.48758 -10.04308 -9.29083 -8.02840 -5.35223 1.37130 1.39541 1.46802 1.69313 2.25384 2.47690 2.95461 3.28111 3.49376 3.55474 3.65037 3.72399 3.77367 3.87066 3.91248 3.97882 4.13101 4.17576 4.29285 4.34385 4.37735 4.45903 4.48925 4.58878 4.60875 4.65819 4.71416 4.72939 4.74817 4.76931 4.81152 4.83210 4.87647 4.91807 4.93638 5.04210 5.05204 5.06993 5.09872 5.14290 5.20762 5.22408 5.30998 5.34287 5.37959 5.42260 5.47819 5.56121 5.57582 5.78758 6.03164 6.22622 6.61436 7.08472 7.31182 7.86765 8.04277 9.18864 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.029118 B = 0.001529 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.365417 B =18311.685652 C =18475.334182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.100 4.100 3 C -0.136 4.136 4 C 0.051 3.949 5 O -0.392 6.392 6 C 0.078 3.922 7 H 0.084 0.916 8 C -0.097 4.097 9 C -0.129 4.129 10 C 0.506 3.494 11 O -0.592 6.592 12 N -0.717 5.717 13 C 0.134 3.866 14 C -0.085 4.085 15 H 0.102 0.898 16 C -0.106 4.106 17 C -0.141 4.141 18 C 0.167 3.833 19 H 0.052 0.948 20 N -0.751 5.751 21 C -0.229 4.229 22 H 0.057 0.943 23 C -0.064 4.064 24 N -0.985 5.985 25 Si 0.953 3.047 26 H -0.278 1.278 27 H -0.297 1.297 28 H -0.255 1.255 29 C -0.118 4.118 30 C -0.145 4.145 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.106 0.894 42 H 0.119 0.881 43 H 0.416 0.584 44 H 0.062 0.938 45 H 0.051 0.949 46 H 0.061 0.939 47 H 0.085 0.915 48 H 0.043 0.957 49 H 0.049 0.951 50 H 0.364 0.636 51 H 0.257 0.743 52 H 0.075 0.925 53 H 0.064 0.936 54 H 0.091 0.909 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -41.273 1.969 -2.583 41.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 C -0.193 4.193 4 C -0.026 4.026 5 O -0.311 6.311 6 C 0.021 3.979 7 H 0.101 0.899 8 C -0.135 4.135 9 C -0.169 4.169 10 C 0.295 3.705 11 O -0.473 6.473 12 N -0.369 5.369 13 C 0.010 3.990 14 C -0.104 4.104 15 H 0.120 0.880 16 C -0.144 4.144 17 C -0.181 4.181 18 C 0.059 3.941 19 H 0.070 0.930 20 N -0.394 5.394 21 C -0.360 4.360 22 H 0.075 0.925 23 C -0.255 4.255 24 N -0.635 5.635 25 Si 0.781 3.219 26 H -0.204 1.204 27 H -0.224 1.224 28 H -0.180 1.180 29 C -0.157 4.157 30 C -0.182 4.182 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.124 0.876 42 H 0.138 0.862 43 H 0.253 0.747 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.103 0.897 48 H 0.062 0.938 49 H 0.068 0.932 50 H 0.197 0.803 51 H 0.066 0.934 52 H 0.094 0.906 53 H 0.082 0.918 54 H 0.109 0.891 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -40.932 2.408 -2.197 41.062 hybrid contribution 1.029 0.783 0.218 1.312 sum -39.903 3.191 -1.979 40.079 Atomic orbital electron populations 1.21737 0.92128 1.02645 1.02605 1.22129 0.97086 0.95859 0.94908 1.21764 1.00452 0.94837 1.02264 1.23780 0.83752 0.97864 0.97163 1.88859 1.30313 1.86451 1.25502 1.22815 0.94493 0.99083 0.81521 0.89868 1.21478 0.92879 0.99581 0.99612 1.21644 0.90696 1.03117 1.01437 1.21336 0.86096 0.80573 0.82519 1.90688 1.86749 1.33912 1.35930 1.45962 1.08280 1.40635 1.42014 1.21251 0.83255 0.98361 0.96154 1.22038 0.92657 1.00606 0.95138 0.87962 1.22121 0.94292 1.01961 0.96021 1.22737 0.96113 1.00466 0.98828 1.21306 0.84042 0.95393 0.93343 0.93028 1.42827 1.02352 1.23259 1.70931 1.19077 0.84609 1.02757 1.29569 0.92458 1.25469 0.94787 1.02545 1.02745 1.69877 0.97652 1.41448 1.54561 0.85435 0.77440 0.80407 0.78641 1.20416 1.22353 1.17986 1.22660 0.93405 1.01303 0.98284 1.23147 0.97487 0.99392 0.98211 0.92015 0.91773 0.91594 0.93751 0.91761 0.92225 0.90975 0.88884 0.90434 0.92850 0.87551 0.86246 0.74685 0.91983 0.93067 0.92020 0.89659 0.93846 0.93178 0.80290 0.93423 0.90590 0.91779 0.89088 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.80 8.55 71.98 0.62 -0.18 16 2 C -0.10 -0.93 0.99 -50.88 -0.05 -0.98 16 3 C -0.14 -1.51 8.53 71.98 0.61 -0.90 16 4 C 0.05 0.53 6.63 72.66 0.48 1.01 16 5 O -0.39 -5.94 10.82 -148.98 -1.61 -7.56 16 6 C 0.08 0.93 3.41 30.96 0.11 1.04 16 7 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 8 C -0.10 -1.49 3.99 30.59 0.12 -1.37 16 9 C -0.13 -1.74 5.62 29.84 0.17 -1.57 16 10 C 0.51 10.42 7.83 87.65 0.69 11.11 16 11 O -0.59 -17.76 15.98 -3.04 -0.05 -17.81 16 12 N -0.72 -12.15 5.39 -463.05 -2.50 -14.65 16 13 C 0.13 2.81 5.00 86.38 0.43 3.24 16 14 C -0.09 -1.76 2.92 -9.72 -0.03 -1.79 16 15 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 16 C -0.11 -2.36 6.05 31.32 0.19 -2.17 16 17 C -0.14 -4.58 6.54 31.32 0.20 -4.38 16 18 C 0.17 6.11 3.50 46.06 0.16 6.27 16 19 H 0.05 1.98 8.10 -2.39 -0.02 1.96 16 20 N -0.75 -35.22 4.96 -317.89 -1.58 -36.80 16 21 C -0.23 -13.17 10.45 84.03 0.88 -12.29 16 22 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 23 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 24 N -0.98 -63.84 13.97 21.65 0.30 -63.53 16 25 Si 0.95 46.40 27.74 68.60 1.90 48.31 16 26 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 27 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 28 H -0.26 -11.34 6.52 99.48 0.65 -10.69 16 29 C -0.12 -3.28 5.93 31.88 0.19 -3.09 16 30 C -0.14 -1.43 5.80 31.58 0.18 -1.24 16 31 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.07 0.30 8.09 -2.39 -0.02 0.28 16 34 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 0.57 8.01 -2.38 -0.02 0.55 16 38 H 0.09 0.90 8.06 -2.39 -0.02 0.88 16 39 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 40 H 0.05 1.07 8.10 -2.38 -0.02 1.06 16 41 H 0.11 1.34 7.91 -2.39 -0.02 1.32 16 42 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.42 4.51 8.32 -92.71 -0.77 3.74 16 44 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.05 1.27 8.05 -2.38 -0.02 1.25 16 46 H 0.06 1.39 7.77 -2.39 -0.02 1.37 16 47 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 48 H 0.04 1.59 8.04 -2.39 -0.02 1.57 16 49 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.36 16.54 5.61 -92.71 -0.52 16.02 16 51 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 52 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 53 H 0.06 1.85 7.95 -2.39 -0.02 1.83 16 54 H 0.09 0.63 7.86 -2.38 -0.02 0.61 16 55 H 0.07 0.85 7.43 -2.39 -0.02 0.83 16 Total: -1.00 -75.67 428.30 1.38 -74.29 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: -0.50 Total: 28.39 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 5.42 Total: -10.64 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -3.77 Total: -114.98 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -1.66 Total: -25.37 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.90 Total: 48.31 kcal Total: -75.67 1.38 -74.29 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689015613.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.603 kcal (2) G-P(sol) polarization free energy of solvation -75.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds