Wall clock time and date at job start Tue Mar 31 2020 21:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 110.01471 * 2 1 4 4 C 1.50699 * 109.47489 * 58.61034 * 3 2 1 5 5 O 1.21284 * 119.99932 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00289 * 180.02562 * 4 3 2 7 7 C 1.46920 * 120.63133 * 359.97438 * 6 4 3 8 8 C 1.53201 * 108.77608 * 126.37303 * 7 6 4 9 9 C 1.53036 * 109.33586 * 54.61968 * 8 7 6 10 10 C 1.53034 * 109.54209 * 298.68717 * 9 8 7 11 11 H 1.08999 * 109.46998 * 301.36200 * 10 9 8 12 12 N 1.46498 * 109.52491 * 181.30251 * 10 9 8 13 13 C 1.36941 * 120.00188 * 300.10989 * 12 10 9 14 14 H 1.08002 * 119.99495 * 326.15313 * 13 12 10 15 15 C 1.38811 * 120.00123 * 146.14577 * 13 12 10 16 16 N 1.31619 * 120.00172 * 337.66774 * 15 13 12 17 17 Si 1.86801 * 119.99826 * 157.66737 * 15 13 12 18 18 H 1.48499 * 109.47366 * 59.99852 * 17 15 13 19 19 H 1.48499 * 109.47173 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47041 * 300.00434 * 17 15 13 21 21 C 1.46504 * 120.00529 * 120.11025 * 12 10 9 22 22 C 1.53001 * 109.46973 * 84.43642 * 21 12 10 23 23 O 1.42904 * 109.46650 * 65.00795 * 22 21 12 24 24 C 1.46931 * 120.63106 * 179.97438 * 6 4 3 25 25 C 1.54274 * 110.06957 * 121.41462 * 2 1 3 26 26 C 1.54888 * 104.19369 * 95.69925 * 25 2 1 27 27 C 1.54891 * 102.74821 * 37.94113 * 26 25 2 28 28 C 1.53868 * 110.03059 * 238.60607 * 2 1 3 29 29 H 1.08998 * 109.47257 * 60.70587 * 1 2 3 30 30 H 1.09004 * 109.47094 * 180.70018 * 1 2 3 31 31 H 1.09001 * 109.47379 * 300.70476 * 1 2 3 32 32 H 1.09002 * 109.47415 * 298.60309 * 3 2 1 33 33 H 1.09005 * 109.46995 * 178.60469 * 3 2 1 34 34 H 1.09001 * 109.58683 * 6.59028 * 7 6 4 35 35 H 1.08996 * 109.70709 * 246.23245 * 7 6 4 36 36 H 1.09000 * 109.49480 * 174.58849 * 8 7 6 37 37 H 1.08999 * 109.49663 * 294.65235 * 8 7 6 38 38 H 1.09004 * 109.45831 * 58.67359 * 9 8 7 39 39 H 1.09004 * 109.45797 * 178.62877 * 9 8 7 40 40 H 0.96998 * 119.99929 * 180.02562 * 16 15 13 41 41 H 1.08991 * 109.47779 * 204.44460 * 21 12 10 42 42 H 1.09003 * 109.46824 * 324.44400 * 21 12 10 43 43 H 1.09005 * 109.47071 * 185.00479 * 22 21 12 44 44 H 1.08996 * 109.47295 * 305.00560 * 22 21 12 45 45 H 0.96703 * 113.99874 * 180.02562 * 23 22 21 46 46 H 1.08998 * 109.58462 * 353.41183 * 24 6 4 47 47 H 1.09000 * 109.58800 * 113.83643 * 24 6 4 48 48 H 1.08996 * 110.48617 * 214.37655 * 25 2 1 49 49 H 1.09000 * 110.48845 * 337.02303 * 25 2 1 50 50 H 1.08997 * 110.75770 * 279.62572 * 26 25 2 51 51 H 1.08995 * 110.75623 * 156.25536 * 26 25 2 52 52 H 1.09005 * 110.48699 * 203.37909 * 27 26 25 53 53 H 1.09000 * 110.48951 * 80.73828 * 27 26 25 54 54 H 1.08994 * 110.03647 * 359.95442 * 28 2 1 55 55 H 1.09002 * 110.03061 * 121.34067 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 1.5303 2.1629 1.2128 5 8 0.8090 1.5869 1.9996 6 7 1.8629 3.4520 1.4228 7 6 2.7352 4.1633 0.4785 8 6 2.0355 5.4524 0.0361 9 6 1.6486 6.2686 1.2715 10 6 0.6755 5.4616 2.1340 11 1 -0.2089 5.2125 1.5477 12 7 0.2812 6.2553 3.3005 13 6 1.2309 6.6875 4.1874 14 1 2.0980 6.0765 4.3904 15 6 1.0792 7.9111 4.8252 16 7 0.3095 8.8382 4.2960 17 14 1.9677 8.2417 6.4349 18 1 3.4331 8.1261 6.2243 19 1 1.6415 9.6109 6.9081 20 1 1.5342 7.2504 7.4522 21 6 -1.1291 6.5868 3.5183 22 6 -1.8194 5.4284 4.2414 23 8 -1.2595 5.2813 5.5479 24 6 1.3600 4.1726 2.6003 25 6 2.0594 -0.7553 1.2367 26 6 2.3298 -2.1897 0.7186 27 6 2.8885 -1.9396 -0.7042 28 6 2.0570 -0.7530 -1.2340 29 1 -0.3634 0.5028 -0.8962 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3634 0.5247 0.8836 32 1 1.7158 1.9474 -0.9022 33 1 3.1434 1.4273 0.0250 34 1 2.9237 3.5332 -0.3907 35 1 3.6798 4.4084 0.9639 36 1 2.7107 6.0366 -0.5892 37 1 1.1386 5.2033 -0.5310 38 1 2.5433 6.4967 1.8508 39 1 1.1723 7.1977 0.9583 40 1 0.2038 9.6933 4.7415 41 1 -1.2008 7.4887 4.1260 42 1 -1.6150 6.7564 2.5575 43 1 -2.8862 5.6362 4.3245 44 1 -1.6714 4.5079 3.6768 45 1 -1.6502 4.5633 6.0646 46 1 0.6411 3.5485 3.1312 47 1 2.1914 4.4186 3.2609 48 1 2.9818 -0.2993 1.5961 49 1 1.3074 -0.7701 2.0255 50 1 1.4053 -2.7653 0.6749 51 1 3.0698 -2.6922 1.3414 52 1 2.7416 -2.8187 -1.3318 53 1 3.9449 -1.6749 -0.6582 54 1 1.2229 -1.1192 -1.8324 55 1 2.6854 -0.0941 -1.8333 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689204979.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:30 Heat of formation + Delta-G solvation = -97.075071 kcal Electronic energy + Delta-G solvation = -31989.807185 eV Core-core repulsion = 28025.780008 eV Total energy + Delta-G solvation = -3964.027177 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.49912 -39.78005 -38.56674 -37.64685 -36.26798 -33.86921 -33.07374 -32.88049 -31.27748 -29.53365 -29.45466 -28.61345 -26.29970 -25.96438 -25.22232 -23.59197 -22.41092 -21.55036 -21.45178 -20.13770 -19.26626 -18.39100 -18.26401 -17.89364 -16.98563 -16.73153 -16.36371 -16.11845 -15.93499 -15.79110 -15.39872 -15.27161 -14.97601 -14.62324 -14.48271 -14.34196 -14.24197 -13.95453 -13.86939 -13.58566 -13.48331 -13.10544 -12.86620 -12.77419 -12.68373 -12.50710 -12.46322 -12.32513 -12.03752 -11.94970 -11.86423 -11.72181 -11.64327 -11.59746 -11.56603 -11.36744 -11.32340 -11.25365 -11.20522 -10.74139 -10.43983 -10.37980 -9.55618 -8.50834 -7.76879 -5.29689 1.43926 1.49446 1.55992 1.76609 2.10526 2.57057 3.34357 3.52531 3.57129 3.70346 3.75195 3.80645 3.92628 4.09918 4.15447 4.19232 4.32678 4.38112 4.41315 4.45968 4.49593 4.52306 4.60194 4.64570 4.66156 4.68143 4.74489 4.82114 4.86138 4.88198 4.89671 4.93097 5.00158 5.02094 5.03375 5.09873 5.10484 5.18509 5.23066 5.25189 5.30581 5.44945 5.48268 5.49672 5.55211 5.59830 5.64508 5.69674 5.72742 5.81573 6.50915 6.61750 7.11724 7.23471 7.34552 7.93030 8.41916 9.22000 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017134 B = 0.003007 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.744647 B = 9310.618763 C = 9683.875613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C -0.122 4.122 4 C 0.504 3.496 5 O -0.576 6.576 6 N -0.610 5.610 7 C 0.106 3.894 8 C -0.122 4.122 9 C -0.113 4.113 10 C 0.168 3.832 11 H 0.048 0.952 12 N -0.582 5.582 13 C -0.228 4.228 14 H 0.048 0.952 15 C -0.032 4.032 16 N -0.920 5.920 17 Si 0.945 3.055 18 H -0.276 1.276 19 H -0.295 1.295 20 H -0.291 1.291 21 C 0.138 3.862 22 C 0.068 3.932 23 O -0.573 6.573 24 C 0.123 3.877 25 C -0.109 4.109 26 C -0.126 4.126 27 C -0.120 4.120 28 C -0.111 4.111 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.038 0.962 40 H 0.247 0.753 41 H 0.075 0.925 42 H 0.042 0.958 43 H 0.047 0.953 44 H 0.026 0.974 45 H 0.373 0.627 46 H 0.054 0.946 47 H 0.045 0.955 48 H 0.051 0.949 49 H 0.044 0.956 50 H 0.062 0.938 51 H 0.065 0.935 52 H 0.074 0.926 53 H 0.071 0.929 54 H 0.070 0.930 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.356 -17.731 -15.245 23.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.047 4.047 3 C -0.161 4.161 4 C 0.294 3.706 5 O -0.456 6.456 6 N -0.344 5.344 7 C -0.016 4.016 8 C -0.161 4.161 9 C -0.153 4.153 10 C 0.060 3.940 11 H 0.066 0.934 12 N -0.302 5.302 13 C -0.358 4.358 14 H 0.065 0.935 15 C -0.228 4.228 16 N -0.565 5.565 17 Si 0.775 3.225 18 H -0.202 1.202 19 H -0.221 1.221 20 H -0.218 1.218 21 C 0.011 3.989 22 C -0.011 4.011 23 O -0.378 6.378 24 C -0.002 4.002 25 C -0.147 4.147 26 C -0.164 4.164 27 C -0.157 4.157 28 C -0.149 4.149 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.139 0.861 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.044 0.956 45 H 0.220 0.780 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.070 0.930 49 H 0.063 0.937 50 H 0.081 0.919 51 H 0.084 0.916 52 H 0.092 0.908 53 H 0.090 0.910 54 H 0.089 0.911 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.316 -17.335 -14.998 23.325 hybrid contribution -0.390 0.341 1.843 1.914 sum 3.926 -16.994 -13.155 21.846 Atomic orbital electron populations 1.22087 0.95067 1.01389 1.01949 1.20929 0.95345 0.92712 0.95702 1.21971 1.03019 0.95536 0.95571 1.21445 0.79942 0.81038 0.88155 1.90598 1.39075 1.66800 1.49099 1.48368 1.49578 1.11343 1.25065 1.21988 0.92538 0.93930 0.93115 1.21902 1.01410 0.95985 0.96811 1.21765 0.99212 0.98014 0.96283 1.20711 0.95237 0.90178 0.87872 0.93413 1.43836 1.02070 1.60229 1.24086 1.18815 1.02650 0.97821 1.16549 0.93488 1.25456 1.00591 0.94961 1.01801 1.70069 1.43649 1.04286 1.38526 0.85695 0.78678 0.75961 0.82176 1.20221 1.22121 1.21767 1.21015 0.83644 0.97284 0.96925 1.22883 0.95496 0.98842 0.83918 1.86753 1.65911 1.57188 1.27915 1.21704 0.97859 0.93266 0.87345 1.22376 0.99556 0.95735 0.96996 1.22522 1.00685 0.95972 0.97178 1.22345 0.99640 0.98288 0.95451 1.22267 0.99890 0.96923 0.95808 0.92627 0.92975 0.92834 0.86697 0.86891 0.86122 0.91141 0.88584 0.91384 0.93635 0.94290 0.94375 0.90685 0.93947 0.93488 0.95621 0.78038 0.92693 0.93686 0.92976 0.93734 0.91934 0.91584 0.90775 0.91048 0.91127 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 7.82 71.98 0.56 -2.75 16 2 C -0.05 -0.88 0.63 -51.46 -0.03 -0.91 16 3 C -0.12 -2.20 2.75 29.85 0.08 -2.12 16 4 C 0.50 14.45 7.16 87.66 0.63 15.08 16 5 O -0.58 -21.12 11.57 -3.04 -0.04 -21.16 16 6 N -0.61 -18.10 2.97 -818.86 -2.43 -20.53 16 7 C 0.11 2.28 6.34 86.37 0.55 2.82 16 8 C -0.12 -2.96 6.08 30.67 0.19 -2.77 16 9 C -0.11 -4.16 5.12 30.62 0.16 -4.00 16 10 C 0.17 6.87 2.78 45.07 0.13 7.00 16 11 H 0.05 1.94 7.87 -2.39 -0.02 1.92 16 12 N -0.58 -28.75 2.35 -677.57 -1.59 -30.34 16 13 C -0.23 -12.51 8.06 84.03 0.68 -11.83 16 14 H 0.05 2.64 6.74 -2.91 -0.02 2.62 16 15 C -0.03 -1.81 4.92 84.86 0.42 -1.40 16 16 N -0.92 -54.17 11.34 21.65 0.25 -53.93 16 17 Si 0.94 46.87 29.61 68.60 2.03 48.90 16 18 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 20 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 21 C 0.14 6.65 5.57 86.38 0.48 7.13 16 22 C 0.07 2.84 7.39 71.98 0.53 3.37 16 23 O -0.57 -25.35 13.40 -148.98 -2.00 -27.35 16 24 C 0.12 4.83 5.76 86.37 0.50 5.33 16 25 C -0.11 -2.42 4.74 31.67 0.15 -2.27 16 26 C -0.13 -2.12 6.91 31.89 0.22 -1.90 16 27 C -0.12 -1.52 6.83 31.67 0.22 -1.30 16 28 C -0.11 -1.45 6.11 31.32 0.19 -1.26 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.60 5.42 -2.39 -0.01 1.59 16 32 H 0.11 1.55 7.69 -2.39 -0.02 1.53 16 33 H 0.11 1.57 7.92 -2.38 -0.02 1.55 16 34 H 0.12 1.57 5.93 -2.39 -0.01 1.56 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 38 H 0.04 1.86 7.70 -2.38 -0.02 1.84 16 39 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 41 H 0.08 4.21 5.34 -2.39 -0.01 4.20 16 42 H 0.04 1.92 8.04 -2.39 -0.02 1.90 16 43 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 44 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.37 12.26 9.12 -74.06 -0.68 11.58 16 46 H 0.05 2.45 7.00 -2.39 -0.02 2.43 16 47 H 0.04 1.95 6.79 -2.39 -0.02 1.94 16 48 H 0.05 1.20 7.84 -2.39 -0.02 1.18 16 49 H 0.04 1.26 7.15 -2.39 -0.02 1.25 16 50 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 53 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 54 H 0.07 0.88 7.67 -2.39 -0.02 0.86 16 55 H 0.08 0.80 7.67 -2.39 -0.02 0.78 16 Total: -1.00 -71.43 409.45 2.04 -69.39 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.18 Total: 26.81 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 5.64 Total: 8.21 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -3.78 Total: -104.80 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: -2.03 Total: -48.50 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -71.43 2.04 -69.39 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689204979.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.686 kcal (2) G-P(sol) polarization free energy of solvation -71.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds