Wall clock time and date at job start Tue Mar 31 2020 22:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.80363 * 2 1 4 4 C 1.54998 * 110.90568 * 236.33273 * 2 1 3 5 5 O 1.44376 * 103.49046 * 204.77808 * 4 2 1 6 6 C 1.43739 * 106.97869 * 40.06235 * 5 4 2 7 7 H 1.09005 * 110.00457 * 92.97431 * 6 5 4 8 8 C 1.52999 * 109.88166 * 214.06423 * 6 5 4 9 9 C 1.52999 * 109.46651 * 292.82998 * 8 6 5 10 10 C 1.50705 * 109.47113 * 180.02562 * 9 8 6 11 11 O 1.21284 * 119.99796 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00313 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00216 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47540 * 179.97438 * 13 12 10 15 15 H 1.09001 * 109.69925 * 299.33684 * 14 13 12 16 16 C 1.52761 * 109.51240 * 179.21412 * 14 13 12 17 17 C 1.53042 * 109.38058 * 185.70590 * 16 14 13 18 18 C 1.53044 * 109.53655 * 61.24378 * 17 16 14 19 19 C 1.53192 * 109.31023 * 298.62805 * 18 17 16 20 20 N 1.46927 * 109.58411 * 59.68676 * 14 13 12 21 21 C 1.36941 * 120.63044 * 353.41840 * 20 14 13 22 22 H 1.07993 * 120.00108 * 31.07873 * 21 20 14 23 23 C 1.38809 * 119.99958 * 211.07247 * 21 20 14 24 24 N 1.31622 * 120.00050 * 20.81023 * 23 21 20 25 25 Si 1.86799 * 120.00203 * 200.53004 * 23 21 20 26 26 H 1.48500 * 109.47188 * 270.27862 * 25 23 21 27 27 H 1.48503 * 109.46836 * 30.27477 * 25 23 21 28 28 H 1.48498 * 109.47219 * 150.27668 * 25 23 21 29 29 C 1.54099 * 107.29047 * 333.48942 * 6 5 4 30 30 H 1.09001 * 109.47133 * 296.37127 * 1 2 3 31 31 H 1.09000 * 109.46962 * 56.36820 * 1 2 3 32 32 H 1.08998 * 109.46847 * 176.37360 * 1 2 3 33 33 H 1.09008 * 109.46895 * 183.63136 * 3 2 1 34 34 H 1.08994 * 109.47564 * 303.62922 * 3 2 1 35 35 H 1.08997 * 109.46863 * 63.63567 * 3 2 1 36 36 H 1.09000 * 110.62109 * 323.28387 * 4 2 1 37 37 H 1.09004 * 110.61731 * 86.11813 * 4 2 1 38 38 H 1.09000 * 109.47095 * 172.83316 * 8 6 5 39 39 H 1.08998 * 109.47143 * 52.82485 * 8 6 5 40 40 H 1.09003 * 109.47611 * 60.00318 * 9 8 6 41 41 H 1.09002 * 109.47419 * 299.99611 * 9 8 6 42 42 H 0.96993 * 119.99773 * 359.97438 * 12 10 9 43 43 H 1.09001 * 109.47163 * 59.99367 * 13 12 10 44 44 H 1.08998 * 109.47041 * 300.00287 * 13 12 10 45 45 H 1.08998 * 109.56398 * 65.67172 * 16 14 13 46 46 H 1.09001 * 109.38614 * 305.63359 * 16 14 13 47 47 H 1.09000 * 109.46076 * 301.21870 * 17 16 14 48 48 H 1.08996 * 109.45321 * 181.25871 * 17 16 14 49 49 H 1.08997 * 109.49594 * 178.68191 * 18 17 16 50 50 H 1.08993 * 109.49784 * 58.58138 * 18 17 16 51 51 H 1.08996 * 109.59109 * 294.85113 * 19 18 17 52 52 H 1.08999 * 109.70231 * 174.49342 * 19 18 17 53 53 H 0.96998 * 120.00275 * 4.64845 * 24 23 21 54 54 H 1.08997 * 110.49012 * 120.70606 * 29 6 5 55 55 H 1.09006 * 110.48418 * 243.35303 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0734 1.4302 0.0000 4 6 2.0831 -0.8027 -1.2051 5 8 3.3940 -1.2147 -0.7622 6 6 3.2719 -1.5881 0.6204 7 1 3.0837 -2.6586 0.7023 8 6 4.5543 -1.2264 1.3724 9 6 5.7039 -2.1023 0.8705 10 6 6.9670 -1.7466 1.6115 11 8 6.9495 -0.8776 2.4574 12 7 8.1164 -2.3933 1.3336 13 6 9.3443 -2.0470 2.0535 14 6 10.4940 -2.9230 1.5518 15 1 10.2633 -3.9725 1.7348 16 6 11.7792 -2.5492 2.2882 17 6 12.9532 -3.3249 1.6865 18 6 13.1129 -2.9490 0.2115 19 6 11.8397 -3.3320 -0.5495 20 7 10.6870 -2.7051 0.1117 21 6 9.8123 -1.9279 -0.5998 22 1 9.3110 -1.1008 -0.1193 23 6 9.5700 -2.2032 -1.9385 24 7 9.8295 -3.3996 -2.4218 25 14 8.8683 -0.8780 -3.0525 26 1 7.3849 -0.9399 -3.0218 27 1 9.3179 0.4558 -2.5790 28 1 9.3443 -1.0963 -4.4421 29 6 2.0825 -0.8010 1.2041 30 1 -0.3633 0.4565 0.9207 31 1 -0.3633 0.5692 -0.8557 32 1 -0.3633 -1.0256 -0.0650 33 1 3.1613 1.4056 -0.0651 34 1 1.6705 1.9721 -0.8556 35 1 1.7758 1.9319 0.9208 36 1 1.4561 -1.6709 -1.4083 37 1 2.1555 -0.1680 -2.0883 38 1 4.4092 -1.3937 2.4396 39 1 4.7940 -0.1774 1.1982 40 1 5.8491 -1.9351 -0.1968 41 1 5.4643 -3.1513 1.0446 42 1 8.1305 -3.0880 0.6568 43 1 9.1993 -2.2146 3.1208 44 1 9.5838 -0.9980 1.8798 45 1 11.6807 -2.7998 3.3444 46 1 11.9581 -1.4791 2.1833 47 1 12.7625 -4.3949 1.7700 48 1 13.8672 -3.0760 2.2256 49 1 13.9636 -3.4841 -0.2102 50 1 13.2789 -1.8752 0.1257 51 1 11.7209 -4.4154 -0.5413 52 1 11.9067 -2.9795 -1.5787 53 1 10.1260 -4.1082 -1.8295 54 1 1.3247 -1.4839 1.5881 55 1 2.4210 -0.1247 1.9891 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690459963.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:09 Heat of formation + Delta-G solvation = -106.881295 kcal Electronic energy + Delta-G solvation = -31181.664304 eV Core-core repulsion = 27217.211898 eV Total energy + Delta-G solvation = -3964.452406 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.12396 -40.63201 -39.46854 -35.82697 -35.57451 -35.18876 -34.43848 -32.46567 -31.51027 -30.30606 -28.24890 -27.73927 -27.03931 -26.50439 -24.83595 -23.73130 -22.49567 -21.93089 -21.21104 -20.69623 -20.32894 -19.13425 -17.78101 -17.33801 -17.11684 -16.69692 -16.54870 -16.36546 -15.95006 -15.76972 -15.51128 -15.10788 -15.04685 -14.97589 -14.72799 -14.30332 -14.13850 -13.94630 -13.87927 -13.73813 -13.61768 -13.23096 -13.06525 -13.00196 -12.77594 -12.71682 -12.56131 -12.40429 -12.19914 -12.08142 -12.00683 -11.97898 -11.73201 -11.64901 -11.62705 -11.53206 -11.38211 -11.29971 -11.03854 -10.68572 -10.50607 -10.45975 -9.83421 -8.80826 -8.09718 -5.33830 1.56081 1.59314 1.74686 1.75656 2.43116 2.61996 2.95923 3.28599 3.47418 3.49704 3.70945 3.87582 3.90850 3.91713 3.97505 4.08691 4.14058 4.17668 4.27552 4.31360 4.34604 4.42283 4.47508 4.53162 4.56680 4.67230 4.69512 4.70275 4.73570 4.78616 4.82515 4.86688 4.88933 4.92042 5.01313 5.04268 5.06241 5.08646 5.12565 5.15023 5.19160 5.27746 5.29592 5.29961 5.33391 5.34984 5.43665 5.58342 5.66279 6.00679 6.05261 6.50379 6.73372 7.12021 7.36274 7.83587 8.29611 9.12371 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015363 B = 0.002957 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.130983 B = 9466.824969 C =10685.417421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 C -0.137 4.137 4 C 0.046 3.954 5 O -0.399 6.399 6 C 0.075 3.925 7 H 0.080 0.920 8 C -0.090 4.090 9 C -0.131 4.131 10 C 0.504 3.496 11 O -0.597 6.597 12 N -0.696 5.696 13 C 0.142 3.858 14 C 0.161 3.839 15 H 0.033 0.967 16 C -0.123 4.123 17 C -0.102 4.102 18 C -0.131 4.131 19 C 0.155 3.845 20 N -0.609 5.609 21 C -0.324 4.324 22 H 0.047 0.953 23 C -0.058 4.058 24 N -0.944 5.944 25 Si 1.090 2.910 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.290 1.290 29 C -0.139 4.139 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.037 0.963 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.052 0.948 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.409 0.591 43 H 0.071 0.929 44 H 0.037 0.963 45 H 0.083 0.917 46 H 0.049 0.951 47 H 0.060 0.940 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.045 0.955 51 H 0.010 0.990 52 H 0.040 0.960 53 H 0.261 0.739 54 H 0.096 0.904 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.561 1.448 8.130 15.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.098 4.098 3 C -0.194 4.194 4 C -0.030 4.030 5 O -0.319 6.319 6 C 0.018 3.982 7 H 0.097 0.903 8 C -0.127 4.127 9 C -0.171 4.171 10 C 0.292 3.708 11 O -0.480 6.480 12 N -0.345 5.345 13 C 0.018 3.982 14 C 0.055 3.945 15 H 0.051 0.949 16 C -0.162 4.162 17 C -0.139 4.139 18 C -0.170 4.170 19 C 0.030 3.970 20 N -0.335 5.335 21 C -0.455 4.455 22 H 0.064 0.936 23 C -0.256 4.256 24 N -0.587 5.587 25 Si 0.919 3.081 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.216 1.216 29 C -0.177 4.177 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.128 0.872 42 H 0.245 0.755 43 H 0.089 0.911 44 H 0.055 0.945 45 H 0.102 0.898 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.096 0.904 49 H 0.088 0.912 50 H 0.064 0.936 51 H 0.028 0.972 52 H 0.059 0.941 53 H 0.071 0.929 54 H 0.115 0.885 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.808 2.404 7.036 15.682 hybrid contribution 0.704 -0.512 0.865 1.227 sum -13.103 1.892 7.901 15.417 Atomic orbital electron populations 1.21718 0.91516 1.02713 1.02835 1.22128 0.97445 0.95739 0.94460 1.21773 1.00197 0.94869 1.02540 1.23834 0.83673 0.97999 0.97513 1.88933 1.30655 1.86475 1.25868 1.22863 0.94745 0.99118 0.81480 0.90251 1.21448 0.92360 0.99130 0.99811 1.21596 0.91908 1.02921 1.00649 1.21129 0.86043 0.80994 0.82628 1.90588 1.87058 1.33885 1.36429 1.46069 1.07970 1.39871 1.40551 1.21168 0.83989 0.98234 0.94818 1.20790 0.93253 0.95862 0.84573 0.94905 1.21825 0.94951 0.99989 0.99466 1.21346 0.98085 0.99665 0.94838 1.21961 0.97694 1.00393 0.96923 1.20834 0.86530 0.93977 0.95672 1.44315 1.26166 1.58885 1.04132 1.19937 1.21792 1.08131 0.95600 0.93565 1.26473 1.00220 1.00736 0.98201 1.70842 1.47188 1.01336 1.39358 0.83138 0.76173 0.73689 0.75147 1.21219 1.21740 1.21645 1.23129 0.96981 0.99339 0.98233 0.91491 0.91682 0.91592 0.94388 0.91612 0.91576 0.90940 0.89188 0.89563 0.92927 0.89888 0.87160 0.75491 0.91099 0.94487 0.89819 0.93175 0.92104 0.90422 0.91246 0.93630 0.97237 0.94123 0.92860 0.88542 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 8.55 71.98 0.62 -0.94 16 2 C -0.10 -1.68 0.99 -50.88 -0.05 -1.73 16 3 C -0.14 -2.57 8.53 71.98 0.61 -1.95 16 4 C 0.05 0.96 6.63 72.67 0.48 1.44 16 5 O -0.40 -11.53 10.82 -148.98 -1.61 -13.14 16 6 C 0.08 1.79 3.41 30.97 0.11 1.89 16 7 H 0.08 1.67 8.14 -2.38 -0.02 1.66 16 8 C -0.09 -2.56 3.99 30.59 0.12 -2.44 16 9 C -0.13 -4.24 5.62 29.85 0.17 -4.08 16 10 C 0.50 19.75 7.83 87.66 0.69 20.43 16 11 O -0.60 -26.33 15.98 -3.04 -0.05 -26.38 16 12 N -0.70 -27.78 3.82 -463.06 -1.77 -29.55 16 13 C 0.14 5.55 4.42 86.38 0.38 5.93 16 14 C 0.16 6.16 3.00 44.83 0.13 6.29 16 15 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 16 C -0.12 -3.89 5.35 30.53 0.16 -3.73 16 17 C -0.10 -3.00 5.89 30.62 0.18 -2.82 16 18 C -0.13 -4.61 6.08 30.67 0.19 -4.43 16 19 C 0.16 6.94 4.64 86.36 0.40 7.34 16 20 N -0.61 -28.12 2.82 -676.04 -1.90 -30.03 16 21 C -0.32 -16.86 6.86 84.03 0.58 -16.28 16 22 H 0.05 2.55 5.90 -2.91 -0.02 2.53 16 23 C -0.06 -3.17 4.78 84.86 0.41 -2.76 16 24 N -0.94 -54.48 12.51 21.65 0.27 -54.21 16 25 Si 1.09 52.16 29.97 68.60 2.06 54.22 16 26 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 27 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 28 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 29 C -0.14 -2.51 5.81 31.58 0.18 -2.33 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 33 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.28 8.01 -2.39 -0.02 1.26 16 37 H 0.09 1.82 8.06 -2.39 -0.02 1.80 16 38 H 0.09 2.29 8.10 -2.39 -0.02 2.27 16 39 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 40 H 0.08 3.04 7.91 -2.39 -0.02 3.02 16 41 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.41 17.15 7.34 -92.71 -0.68 16.46 16 43 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.04 1.64 7.45 -2.39 -0.02 1.62 16 45 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 51 H 0.01 0.44 7.77 -2.39 -0.02 0.42 16 52 H 0.04 2.10 6.43 -2.39 -0.02 2.08 16 53 H 0.26 15.06 6.42 -92.71 -0.60 14.46 16 54 H 0.10 1.33 7.86 -2.39 -0.02 1.31 16 55 H 0.08 1.46 7.42 -2.38 -0.02 1.44 16 Total: -1.00 -65.71 416.60 2.68 -63.03 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: 0.33 Total: 36.22 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 5.36 Total: -0.15 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -3.40 Total: -113.79 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -1.66 Total: -39.52 kcal Atomic # 14 Polarization: 52.16 SS G_CDS: 2.06 Total: 54.22 kcal Total: -65.71 2.68 -63.03 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690459963.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.854 kcal (2) G-P(sol) polarization free energy of solvation -65.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds