Wall clock time and date at job start Tue Mar 31 2020 21:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00230 * 2 1 4 4 H 1.48501 * 109.47228 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47191 * 300.00749 * 3 2 1 6 6 H 1.48499 * 109.47047 * 60.00364 * 3 2 1 7 7 C 1.38814 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99953 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99691 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00085 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47492 * 174.77578 * 10 9 7 12 12 H 1.08998 * 109.69989 * 312.91952 * 11 10 9 13 13 C 1.52765 * 109.51216 * 192.80284 * 11 10 9 14 14 C 1.53031 * 109.38470 * 185.70435 * 13 11 10 15 15 C 1.53042 * 109.54083 * 61.23858 * 14 13 11 16 16 C 1.53194 * 109.31002 * 298.63584 * 15 14 13 17 17 N 1.46922 * 109.58787 * 73.27377 * 11 10 9 18 18 C 1.34776 * 120.63219 * 353.42034 * 17 11 10 19 19 O 1.21287 * 119.99746 * 354.56410 * 18 17 11 20 20 C 1.50701 * 120.00083 * 174.56583 * 18 17 11 21 21 C 1.53003 * 109.46967 * 180.02562 * 20 18 17 22 22 C 1.53004 * 109.47091 * 180.02562 * 21 20 18 23 23 C 1.52995 * 109.47254 * 179.97438 * 22 21 20 24 24 C 1.53178 * 109.54754 * 174.99817 * 23 22 21 25 25 C 1.53086 * 109.16640 * 176.84422 * 24 23 22 26 26 O 1.42900 * 109.41810 * 302.39581 * 25 24 23 27 27 C 1.42897 * 114.09995 * 61.15479 * 26 25 24 28 28 C 1.53089 * 109.41591 * 298.84356 * 27 26 25 29 29 H 0.96999 * 120.00049 * 359.97438 * 1 2 3 30 30 H 0.97004 * 120.00159 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47374 * 54.76665 * 10 9 7 32 32 H 1.09006 * 109.46795 * 294.77480 * 10 9 7 33 33 H 1.09001 * 109.56181 * 65.66686 * 13 11 10 34 34 H 1.09003 * 109.35869 * 305.61782 * 13 11 10 35 35 H 1.09005 * 109.45864 * 301.22100 * 14 13 11 36 36 H 1.08996 * 109.45151 * 181.25378 * 14 13 11 37 37 H 1.08996 * 109.49921 * 178.68542 * 15 14 13 38 38 H 1.08997 * 109.51995 * 58.59835 * 15 14 13 39 39 H 1.08994 * 109.59095 * 294.84428 * 16 15 14 40 40 H 1.09002 * 109.69974 * 174.48775 * 16 15 14 41 41 H 1.08996 * 109.47050 * 60.00406 * 20 18 17 42 42 H 1.08995 * 109.46871 * 299.99735 * 20 18 17 43 43 H 1.08999 * 109.47561 * 59.99581 * 21 20 18 44 44 H 1.09005 * 109.46758 * 299.99476 * 21 20 18 45 45 H 1.09004 * 109.47047 * 59.99676 * 22 21 20 46 46 H 1.08997 * 109.46721 * 299.99977 * 22 21 20 47 47 H 1.09007 * 109.61682 * 54.77279 * 23 22 21 48 48 H 1.08997 * 109.51584 * 56.93925 * 24 23 22 49 49 H 1.08996 * 109.51753 * 296.75677 * 24 23 22 50 50 H 1.08994 * 109.48210 * 182.40709 * 25 24 23 51 51 H 1.09004 * 109.48646 * 62.37905 * 25 24 23 52 52 H 1.08998 * 109.48537 * 58.82440 * 27 26 25 53 53 H 1.08999 * 109.48352 * 178.86456 * 27 26 25 54 54 H 1.08999 * 109.52629 * 297.69974 * 28 27 26 55 55 H 1.09003 * 109.52943 * 177.51279 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0689 -4.8167 0.1308 12 1 0.3604 -4.6065 0.9319 13 6 1.8298 -6.1024 0.4497 14 6 0.8573 -7.2839 0.4400 15 6 0.2336 -7.4221 -0.9507 16 6 -0.5497 -6.1483 -1.2834 17 7 0.3437 -4.9914 -1.1349 18 6 0.4992 -4.1101 -2.1428 19 8 1.1652 -3.1101 -1.9765 20 6 -0.1543 -4.3672 -3.4761 21 6 0.1785 -3.2233 -4.4362 22 6 -0.4855 -3.4840 -5.7898 23 6 -0.1533 -2.3399 -6.7496 24 6 -0.7117 -2.6587 -8.1399 25 6 -0.4437 -1.4749 -9.0728 26 8 -1.0363 -0.2953 -8.5257 27 6 -0.5189 0.0785 -7.2471 28 6 -0.7900 -1.0429 -6.2408 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 2.7531 -3.6751 0.8388 32 1 2.6126 -3.7561 -0.9337 33 1 2.2912 -6.0190 1.4338 34 1 2.6026 -6.2610 -0.3025 35 1 0.0709 -7.1130 1.1753 36 1 1.3950 -8.1987 0.6893 37 1 -0.4413 -8.2779 -0.9633 38 1 1.0209 -7.5685 -1.6900 39 1 -1.3930 -6.0488 -0.6000 40 1 -0.9148 -6.1988 -2.3092 41 1 -1.2345 -4.4295 -3.3453 42 1 0.2167 -5.3059 -3.8875 43 1 1.2589 -3.1613 -4.5670 44 1 -0.1922 -2.2844 -4.0249 45 1 -1.5658 -3.5457 -5.6586 46 1 -0.1152 -4.4230 -6.2012 47 1 0.9280 -2.2157 -6.8107 48 1 -1.7856 -2.8316 -8.0700 49 1 -0.2231 -3.5502 -8.5329 50 1 -0.8767 -1.6786 -10.0521 51 1 0.6316 -1.3280 -9.1741 52 1 0.5554 0.2456 -7.3244 53 1 -1.0062 0.9938 -6.9112 54 1 -1.8655 -1.1832 -6.1326 55 1 -0.3574 -0.7789 -5.2758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690470001.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:04 Heat of formation + Delta-G solvation = -84.021446 kcal Electronic energy + Delta-G solvation = -31376.551448 eV Core-core repulsion = 27413.090319 eV Total energy + Delta-G solvation = -3963.461129 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.39974 -40.40491 -38.29236 -36.92255 -36.26045 -34.15469 -33.56450 -33.06926 -32.01484 -31.49289 -28.96545 -27.53803 -25.87281 -25.02985 -24.44704 -24.31281 -22.92509 -21.90955 -21.35286 -20.95412 -19.79434 -19.02703 -17.57441 -17.10082 -17.03473 -16.88795 -16.69145 -16.53268 -15.90271 -15.60502 -15.45468 -15.27939 -15.18474 -14.94776 -14.74478 -14.70322 -14.40520 -13.95184 -13.87958 -13.64861 -13.49275 -13.20488 -13.12168 -12.84497 -12.75114 -12.66248 -12.63562 -12.35734 -12.23342 -12.10653 -12.03747 -11.85958 -11.80059 -11.70206 -11.62418 -11.43696 -11.31268 -11.19501 -11.13298 -10.85333 -10.45165 -9.81075 -9.32827 -8.61896 -7.83731 -5.01507 1.40952 1.43095 1.52326 2.07972 2.24531 2.60544 2.94200 3.48809 3.60152 3.74311 3.76904 3.88026 3.88253 3.97324 4.07055 4.09350 4.16600 4.17534 4.24539 4.29578 4.37339 4.42352 4.48437 4.49663 4.53223 4.64216 4.68076 4.72340 4.73970 4.74954 4.81217 4.85705 4.87484 4.92563 5.01421 5.03706 5.06574 5.09484 5.13399 5.15467 5.18695 5.19235 5.26645 5.31005 5.33034 5.47352 5.50095 5.53256 5.54665 5.91705 6.23746 6.37306 6.77064 7.43669 7.70395 8.25449 8.48565 9.41488 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007495 B = 0.004003 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3734.952889 B = 6992.325980 C =10286.351343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.083 4.083 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.299 1.299 6 H -0.292 1.292 7 C -0.207 4.207 8 H 0.059 0.941 9 N -0.700 5.700 10 C 0.167 3.833 11 C 0.146 3.854 12 H 0.052 0.948 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.127 4.127 16 C 0.103 3.897 17 N -0.617 5.617 18 C 0.461 3.539 19 O -0.511 6.511 20 C -0.122 4.122 21 C -0.097 4.097 22 C -0.097 4.097 23 C -0.089 4.089 24 C -0.142 4.142 25 C 0.051 3.949 26 O -0.403 6.403 27 C 0.060 3.940 28 C -0.152 4.152 29 H 0.243 0.757 30 H 0.366 0.634 31 H 0.010 0.990 32 H 0.015 0.985 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.044 0.956 44 H 0.033 0.967 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.063 0.937 48 H 0.072 0.928 49 H 0.094 0.906 50 H 0.111 0.889 51 H 0.052 0.948 52 H 0.050 0.950 53 H 0.092 0.908 54 H 0.067 0.933 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.251 -19.154 -13.605 23.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.274 4.274 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.227 1.227 6 H -0.219 1.219 7 C -0.340 4.340 8 H 0.077 0.923 9 N -0.340 5.340 10 C 0.041 3.959 11 C 0.042 3.958 12 H 0.070 0.930 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.165 4.165 16 C -0.019 4.019 17 N -0.354 5.354 18 C 0.248 3.752 19 O -0.384 6.384 20 C -0.161 4.161 21 C -0.136 4.136 22 C -0.135 4.135 23 C -0.108 4.108 24 C -0.179 4.179 25 C -0.025 4.025 26 O -0.322 6.322 27 C -0.016 4.016 28 C -0.190 4.190 29 H 0.052 0.948 30 H 0.198 0.802 31 H 0.028 0.972 32 H 0.033 0.967 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.133 0.867 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.088 0.912 46 H 0.105 0.895 47 H 0.081 0.919 48 H 0.090 0.910 49 H 0.113 0.887 50 H 0.129 0.871 51 H 0.070 0.930 52 H 0.068 0.932 53 H 0.111 0.889 54 H 0.086 0.914 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.838 -18.408 -13.619 23.074 hybrid contribution 0.378 1.531 0.595 1.685 sum -2.460 -16.877 -13.024 21.460 Atomic orbital electron populations 1.69826 1.06320 1.24893 1.61628 1.25296 0.96267 1.00185 1.05609 0.85200 0.78063 0.80888 0.76550 1.19684 1.22666 1.21930 1.19503 0.90645 0.85965 1.37911 0.92322 1.42250 1.04611 1.00389 1.86759 1.20832 0.93698 0.85245 0.96152 1.21172 0.93340 0.95319 0.85938 0.93034 1.21775 0.98409 0.93479 1.02098 1.21501 0.98463 0.97437 0.97758 1.21896 1.00391 0.97172 0.97012 1.21950 0.92005 0.84417 1.03533 1.48134 1.46430 1.27056 1.13753 1.21555 0.83470 0.82932 0.87245 1.91203 1.39300 1.26597 1.81261 1.21644 1.02002 1.01122 0.91379 1.21248 0.99941 0.97218 0.95148 1.21534 1.00772 0.98373 0.92801 1.21199 0.99625 0.94431 0.95512 1.22197 1.02287 0.99199 0.94224 1.22808 0.98017 0.84203 0.97463 1.87882 1.64999 1.45189 1.34158 1.22573 0.98561 0.97472 0.83027 1.22245 1.01575 0.96456 0.98731 0.94780 0.80192 0.97227 0.96709 0.90548 0.92007 0.91721 0.89796 0.88142 0.91589 0.91678 0.87829 0.88290 0.86685 0.93745 0.94853 0.91228 0.89523 0.91878 0.90960 0.88709 0.87118 0.92954 0.93165 0.88938 0.91411 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.63 13.06 21.65 0.28 -64.35 16 2 C -0.08 -5.22 5.50 84.86 0.47 -4.76 16 3 Si 0.96 50.85 29.55 68.60 2.03 52.88 16 4 H -0.27 -13.67 7.11 99.48 0.71 -12.97 16 5 H -0.30 -15.83 7.11 99.48 0.71 -15.12 16 6 H -0.29 -15.12 7.11 99.48 0.71 -14.41 16 7 C -0.21 -12.93 9.73 84.03 0.82 -12.11 16 8 H 0.06 3.62 7.83 -2.91 -0.02 3.59 16 9 N -0.70 -39.69 3.20 -343.45 -1.10 -40.79 16 10 C 0.17 7.64 4.89 86.38 0.42 8.07 16 11 C 0.15 5.02 2.89 44.83 0.13 5.15 16 12 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 13 C -0.12 -2.93 5.31 30.53 0.16 -2.77 16 14 C -0.11 -1.96 5.88 30.62 0.18 -1.78 16 15 C -0.13 -1.86 6.08 30.67 0.19 -1.68 16 16 C 0.10 2.00 6.35 86.36 0.55 2.55 16 17 N -0.62 -18.96 2.98 -795.82 -2.37 -21.33 16 18 C 0.46 16.90 7.32 87.66 0.64 17.55 16 19 O -0.51 -25.34 9.71 -3.05 -0.03 -25.37 16 20 C -0.12 -3.15 4.05 29.85 0.12 -3.03 16 21 C -0.10 -2.88 4.27 30.60 0.13 -2.75 16 22 C -0.10 -2.01 4.69 30.59 0.14 -1.86 16 23 C -0.09 -1.95 2.27 -10.67 -0.02 -1.97 16 24 C -0.14 -2.36 5.42 30.68 0.17 -2.19 16 25 C 0.05 0.93 6.84 72.01 0.49 1.42 16 26 O -0.40 -10.03 10.76 -148.98 -1.60 -11.63 16 27 C 0.06 1.53 6.84 72.01 0.49 2.02 16 28 C -0.15 -4.05 5.10 30.69 0.16 -3.90 16 29 H 0.24 15.66 8.31 -92.71 -0.77 14.89 16 30 H 0.37 22.33 7.23 -92.71 -0.67 21.66 16 31 H 0.01 0.46 8.08 -2.39 -0.02 0.44 16 32 H 0.02 0.75 6.36 -2.38 -0.02 0.74 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.10 1.53 5.93 -2.39 -0.01 1.52 16 41 H 0.10 2.21 7.73 -2.39 -0.02 2.19 16 42 H 0.12 2.14 7.90 -2.39 -0.02 2.12 16 43 H 0.04 1.48 8.10 -2.39 -0.02 1.46 16 44 H 0.03 1.27 6.62 -2.38 -0.02 1.25 16 45 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 48 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 52 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 53 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 54 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 55 H 0.05 1.76 6.75 -2.39 -0.02 1.74 16 Total: -1.00 -81.49 411.42 2.61 -78.88 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: 0.17 Total: 33.76 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 5.23 Total: -2.04 kcal Atomic # 7 Polarization: -123.29 SS G_CDS: -3.19 Total: -126.47 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -1.63 Total: -37.00 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 2.03 Total: 52.88 kcal Total: -81.49 2.61 -78.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690470001.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.146 kcal (2) G-P(sol) polarization free energy of solvation -81.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds