Wall clock time and date at job start Tue Mar 31 2020 22:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 110.43374 * 2 1 4 4 C 1.54098 * 110.48570 * 237.31206 * 2 1 3 5 5 O 1.43745 * 107.29547 * 239.29023 * 4 2 1 6 6 C 1.44384 * 106.97412 * 26.51882 * 5 4 2 7 7 H 1.08995 * 110.61905 * 78.43764 * 6 5 4 8 8 C 1.52997 * 110.62107 * 201.43770 * 6 5 4 9 9 C 1.53001 * 109.47135 * 289.07012 * 8 6 5 10 10 C 1.50696 * 109.47086 * 179.97438 * 9 8 6 11 11 O 1.21280 * 120.00008 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99929 * 179.97438 * 10 9 8 13 13 C 1.46922 * 120.62725 * 354.41317 * 12 10 9 14 14 C 1.53198 * 108.77415 * 126.37217 * 13 12 10 15 15 C 1.53039 * 109.31219 * 54.63070 * 14 13 12 16 16 C 1.53041 * 109.53880 * 298.63818 * 15 14 13 17 17 C 1.46924 * 120.63150 * 174.13675 * 12 10 9 18 18 H 1.09002 * 109.58429 * 113.84290 * 17 12 10 19 19 C 1.53000 * 109.58467 * 353.41749 * 17 12 10 20 20 N 1.46504 * 109.47007 * 181.62216 * 19 17 12 21 21 C 1.36938 * 119.99936 * 184.95090 * 20 19 17 22 22 H 1.07993 * 120.00086 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99801 * 179.97438 * 21 20 19 24 24 N 1.31616 * 120.00171 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00060 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47163 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47055 * 119.99774 * 25 23 21 28 28 H 1.48496 * 109.47556 * 240.00331 * 25 23 21 29 29 C 1.54810 * 110.48726 * 122.54448 * 2 1 3 30 30 H 1.09000 * 109.47576 * 297.45154 * 1 2 3 31 31 H 1.08996 * 109.47391 * 57.45612 * 1 2 3 32 32 H 1.09000 * 109.47248 * 177.45454 * 1 2 3 33 33 H 1.09002 * 109.47232 * 182.54628 * 3 2 1 34 34 H 1.08999 * 109.47768 * 302.54689 * 3 2 1 35 35 H 1.09003 * 109.47147 * 62.54843 * 3 2 1 36 36 H 1.08996 * 109.88234 * 358.72217 * 4 2 1 37 37 H 1.09002 * 109.87840 * 119.71851 * 4 2 1 38 38 H 1.09006 * 109.46756 * 49.06387 * 8 6 5 39 39 H 1.09001 * 109.47437 * 169.06683 * 8 6 5 40 40 H 1.08996 * 109.46774 * 299.99949 * 9 8 6 41 41 H 1.09001 * 109.47226 * 59.99543 * 9 8 6 42 42 H 1.08997 * 109.58884 * 246.15659 * 13 12 10 43 43 H 1.09005 * 109.58990 * 6.44309 * 13 12 10 44 44 H 1.09004 * 109.49879 * 174.58977 * 14 13 12 45 45 H 1.09000 * 109.49526 * 294.68161 * 14 13 12 46 46 H 1.09002 * 109.45872 * 58.65869 * 15 14 13 47 47 H 1.08997 * 109.46096 * 178.63008 * 15 14 13 48 48 H 1.09006 * 109.49263 * 181.31224 * 16 15 14 49 49 H 1.08998 * 109.49807 * 301.37595 * 16 15 14 50 50 H 1.08997 * 109.47516 * 301.62142 * 19 17 12 51 51 H 1.08998 * 109.47219 * 61.62539 * 19 17 12 52 52 H 0.96999 * 119.99895 * 4.94806 * 20 19 17 53 53 H 0.97004 * 120.00485 * 179.97438 * 24 23 21 54 54 H 1.08998 * 110.91133 * 215.99352 * 29 2 1 55 55 H 1.08998 * 110.90744 * 339.59919 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0641 1.4337 0.0000 4 6 2.0693 -0.7796 -1.2149 5 8 2.8754 -1.8564 -0.7081 6 6 2.3781 -2.1709 0.6104 7 1 1.4699 -2.7700 0.5452 8 6 3.4465 -2.8969 1.4303 9 6 3.6387 -4.3112 0.8791 10 6 4.6915 -5.0261 1.6863 11 8 5.2349 -4.4600 2.6110 12 7 5.0291 -6.2946 1.3805 13 6 4.2967 -7.0351 0.3443 14 6 5.3010 -7.5745 -0.6792 15 6 6.3692 -8.3971 0.0449 16 6 7.1205 -7.5030 1.0340 17 6 6.1405 -6.9611 2.0729 18 1 5.7553 -7.7856 2.6729 19 6 6.8578 -5.9565 2.9768 20 7 7.9889 -6.6138 3.6363 21 6 8.7217 -5.9373 4.5747 22 1 8.4661 -4.9192 4.8283 23 6 9.7931 -6.5603 5.1999 24 7 10.1049 -7.8009 4.8904 25 14 10.7932 -5.6373 6.4795 26 1 10.2428 -4.2680 6.6446 27 1 10.7237 -6.3578 7.7761 28 1 12.2077 -5.5525 6.0355 29 6 2.0718 -0.7801 1.2225 30 1 -0.3634 0.4737 0.9119 31 1 -0.3634 0.5528 -0.8663 32 1 -0.3634 -1.0266 -0.0456 33 1 3.1530 1.4157 -0.0457 34 1 1.6730 1.9672 -0.8662 35 1 1.7470 1.9395 0.9120 36 1 1.2391 -1.1800 -1.7966 37 1 2.6750 -0.1218 -1.8382 38 1 4.3876 -2.3508 1.3655 39 1 3.1297 -2.9528 2.4717 40 1 2.6976 -4.8573 0.9438 41 1 3.9555 -4.2554 -0.1624 42 1 3.7581 -7.8658 0.8004 43 1 3.5898 -6.3689 -0.1503 44 1 4.7820 -8.2061 -1.4003 45 1 5.7738 -6.7411 -1.1989 46 1 5.8932 -9.2158 0.5846 47 1 7.0713 -8.8022 -0.6838 48 1 7.8966 -8.0840 1.5324 49 1 7.5767 -6.6707 0.4981 50 1 7.2218 -5.1227 2.3764 51 1 6.1634 -5.5855 3.7306 52 1 8.2187 -7.5281 3.4082 53 1 10.8539 -8.2362 5.3270 54 1 2.9797 -0.3167 1.6085 55 1 1.3140 -0.8566 2.0021 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690486016.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:00 Heat of formation + Delta-G solvation = -99.884817 kcal Electronic energy + Delta-G solvation = -30681.950633 eV Core-core repulsion = 26717.801616 eV Total energy + Delta-G solvation = -3964.149016 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.61514 -40.83010 -38.53374 -36.67363 -35.73525 -34.66682 -33.78035 -33.66198 -31.49161 -30.18930 -28.23742 -27.81480 -26.90340 -26.09870 -25.19680 -24.66189 -22.64837 -22.01903 -21.59324 -20.26886 -19.93431 -19.12796 -17.93929 -17.45060 -17.17737 -16.60228 -16.41741 -16.27616 -15.97404 -15.55315 -15.36935 -15.20998 -14.95180 -14.77853 -14.70870 -14.53913 -14.39774 -14.25580 -14.09269 -13.67712 -13.57328 -13.52664 -13.07965 -12.96551 -12.86209 -12.69149 -12.61521 -12.39050 -12.22593 -12.17260 -12.07030 -12.04070 -12.00101 -11.83295 -11.59853 -11.58892 -11.51344 -11.37976 -11.34406 -11.01414 -10.51533 -10.10589 -9.55839 -8.97506 -7.98177 -5.26257 1.42310 1.44236 1.55248 1.69934 2.00024 2.54561 2.93705 3.34252 3.40248 3.57860 3.72787 3.83521 3.87477 3.90461 3.97694 3.98977 4.12286 4.13709 4.14354 4.29139 4.31012 4.35456 4.41365 4.45086 4.53813 4.61559 4.68279 4.72561 4.74869 4.77223 4.79266 4.83198 4.86426 4.95922 4.97970 5.02010 5.06161 5.07970 5.11624 5.12237 5.20017 5.23295 5.26185 5.29534 5.31094 5.32978 5.42886 5.44381 5.47793 5.70553 6.03250 6.25037 6.53481 7.29194 7.31228 8.05504 8.33333 9.25680 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011533 B = 0.002592 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.227676 B =10800.636350 C =12782.979695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.099 4.099 3 C -0.137 4.137 4 C 0.050 3.950 5 O -0.396 6.396 6 C 0.083 3.917 7 H 0.092 0.908 8 C -0.095 4.095 9 C -0.121 4.121 10 C 0.496 3.504 11 O -0.574 6.574 12 N -0.608 5.608 13 C 0.101 3.899 14 C -0.129 4.129 15 C -0.115 4.115 16 C -0.121 4.121 17 C 0.149 3.851 18 H 0.066 0.934 19 C 0.174 3.826 20 N -0.746 5.746 21 C -0.243 4.243 22 H 0.061 0.939 23 C -0.074 4.074 24 N -0.967 5.967 25 Si 0.976 3.024 26 H -0.274 1.274 27 H -0.286 1.286 28 H -0.287 1.287 29 C -0.145 4.145 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.048 0.952 39 H 0.078 0.922 40 H 0.124 0.876 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.055 0.945 49 H 0.045 0.955 50 H -0.004 1.004 51 H 0.034 0.966 52 H 0.373 0.627 53 H 0.253 0.747 54 H 0.064 0.936 55 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.681 9.609 -18.213 32.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.099 4.099 3 C -0.195 4.195 4 C -0.027 4.027 5 O -0.316 6.316 6 C 0.026 3.974 7 H 0.110 0.890 8 C -0.133 4.133 9 C -0.161 4.161 10 C 0.286 3.714 11 O -0.454 6.454 12 N -0.341 5.341 13 C -0.020 4.020 14 C -0.167 4.167 15 C -0.152 4.152 16 C -0.159 4.159 17 C 0.045 3.955 18 H 0.084 0.916 19 C 0.048 3.952 20 N -0.391 5.391 21 C -0.375 4.375 22 H 0.079 0.921 23 C -0.266 4.266 24 N -0.618 5.618 25 Si 0.804 3.196 26 H -0.198 1.198 27 H -0.213 1.213 28 H -0.214 1.214 29 C -0.183 4.183 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.142 0.858 41 H 0.126 0.874 42 H 0.103 0.897 43 H 0.134 0.866 44 H 0.127 0.873 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.074 0.926 49 H 0.064 0.936 50 H 0.014 0.986 51 H 0.052 0.948 52 H 0.207 0.793 53 H 0.062 0.938 54 H 0.083 0.917 55 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -25.223 9.967 -17.758 32.418 hybrid contribution 1.314 0.192 1.063 1.701 sum -23.910 10.159 -16.695 30.881 Atomic orbital electron populations 1.21857 0.92051 1.02506 1.02808 1.21948 0.97393 0.96313 0.94270 1.21845 1.00444 0.94458 1.02722 1.23436 0.95059 0.88361 0.95806 1.88869 1.57561 1.53452 1.31714 1.23182 0.96147 0.95836 0.82215 0.89027 1.21318 0.98699 0.94144 0.99134 1.21674 0.98334 0.95838 1.00243 1.21597 0.84123 0.81374 0.84321 1.90793 1.55555 1.67249 1.31777 1.48319 1.33048 1.13386 1.39392 1.22124 0.94417 0.97361 0.88086 1.21922 0.96745 1.00202 0.97808 1.21528 0.98281 0.97681 0.97715 1.21751 0.97615 0.99499 0.97079 1.21089 0.87088 0.94426 0.92892 0.91565 1.21114 0.87966 0.92137 0.93955 1.42764 1.34346 1.14903 1.47083 1.19539 1.07915 0.96422 1.13580 0.92118 1.25552 1.00497 0.97515 1.03055 1.69811 1.31542 1.13083 1.47395 0.85045 0.78176 0.77835 0.78545 1.19843 1.21309 1.21415 1.23324 1.01836 0.94948 0.98202 0.91814 0.91403 0.91990 0.93441 0.91235 0.91961 0.91012 0.89983 0.93337 0.90385 0.85798 0.87430 0.89719 0.86640 0.87311 0.92211 0.90959 0.90747 0.92623 0.93573 0.98599 0.94834 0.79350 0.93804 0.91742 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.25 71.98 0.59 -0.55 16 2 C -0.10 -1.21 0.99 -51.20 -0.05 -1.26 16 3 C -0.14 -1.61 8.27 71.98 0.60 -1.02 16 4 C 0.05 0.71 7.04 72.35 0.51 1.22 16 5 O -0.40 -7.93 11.08 -148.98 -1.65 -9.58 16 6 C 0.08 1.40 3.29 31.28 0.10 1.51 16 7 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 8 C -0.09 -2.13 4.26 30.59 0.13 -2.00 16 9 C -0.12 -2.48 4.00 29.85 0.12 -2.36 16 10 C 0.50 15.61 7.53 87.65 0.66 16.27 16 11 O -0.57 -24.52 11.55 -3.03 -0.03 -24.55 16 12 N -0.61 -17.54 2.98 -795.83 -2.37 -19.91 16 13 C 0.10 1.74 6.35 86.37 0.55 2.29 16 14 C -0.13 -2.16 6.08 30.67 0.19 -1.97 16 15 C -0.11 -2.62 5.89 30.62 0.18 -2.44 16 16 C -0.12 -4.13 5.07 30.53 0.15 -3.98 16 17 C 0.15 5.56 3.09 44.83 0.14 5.70 16 18 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 19 C 0.17 8.67 4.14 86.38 0.36 9.03 16 20 N -0.75 -43.02 5.38 -343.45 -1.85 -44.87 16 21 C -0.24 -15.26 9.99 84.03 0.84 -14.42 16 22 H 0.06 3.85 7.83 -2.91 -0.02 3.83 16 23 C -0.07 -4.59 5.50 84.86 0.47 -4.12 16 24 N -0.97 -62.13 13.06 21.65 0.28 -61.84 16 25 Si 0.98 49.68 29.55 68.60 2.03 51.71 16 26 H -0.27 -13.49 7.11 99.48 0.71 -12.78 16 27 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 28 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 29 C -0.15 -2.22 5.70 31.90 0.18 -2.04 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.81 7.69 -2.39 -0.02 0.79 16 37 H 0.08 1.14 7.70 -2.39 -0.02 1.12 16 38 H 0.05 1.39 8.10 -2.38 -0.02 1.37 16 39 H 0.08 1.83 8.10 -2.39 -0.02 1.81 16 40 H 0.12 1.64 7.71 -2.39 -0.02 1.62 16 41 H 0.11 2.01 7.84 -2.39 -0.02 1.99 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 43 H 0.12 1.28 5.93 -2.38 -0.01 1.27 16 44 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.06 2.21 6.88 -2.38 -0.02 2.19 16 49 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 50 H 0.00 -0.21 7.26 -2.39 -0.02 -0.23 16 51 H 0.03 1.84 6.21 -2.39 -0.01 1.83 16 52 H 0.37 21.87 6.35 -92.71 -0.59 21.28 16 53 H 0.25 15.53 8.31 -92.70 -0.77 14.76 16 54 H 0.06 1.20 7.79 -2.39 -0.02 1.18 16 55 H 0.09 1.17 7.86 -2.39 -0.02 1.15 16 Total: -1.00 -80.43 415.88 2.38 -78.06 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.25 Total: 31.13 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 5.71 Total: -0.14 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -3.93 Total: -126.62 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.69 Total: -34.13 kcal Atomic # 14 Polarization: 49.68 SS G_CDS: 2.03 Total: 51.71 kcal Total: -80.43 2.38 -78.06 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690486016.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.827 kcal (2) G-P(sol) polarization free energy of solvation -80.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds