Wall clock time and date at job start Tue Mar 31 2020 22:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 110.54091 * 2 1 4 4 C 1.54104 * 110.48809 * 122.62286 * 2 1 3 5 5 O 1.43739 * 107.29562 * 120.70398 * 4 2 1 6 6 C 1.44378 * 106.97610 * 333.48510 * 5 4 2 7 7 H 1.09004 * 110.62028 * 281.40362 * 6 5 4 8 8 C 1.53003 * 110.62013 * 158.56361 * 6 5 4 9 9 C 1.52996 * 109.47381 * 66.44982 * 8 6 5 10 10 C 1.50699 * 109.47441 * 180.02562 * 9 8 6 11 11 O 1.21281 * 119.99757 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00177 * 180.02562 * 10 9 8 13 13 C 1.46927 * 120.63003 * 5.91404 * 12 10 9 14 14 C 1.53196 * 108.88713 * 126.46651 * 13 12 10 15 15 C 1.53038 * 109.31573 * 54.56760 * 14 13 12 16 16 C 1.53041 * 109.53308 * 298.63039 * 15 14 13 17 17 C 1.46965 * 120.65378 * 185.73618 * 12 10 9 18 18 H 1.09001 * 109.46484 * 113.75050 * 17 12 10 19 19 C 1.52997 * 109.59233 * 353.39953 * 17 12 10 20 20 N 1.46500 * 109.47680 * 69.75632 * 19 17 12 21 21 C 1.36936 * 119.99972 * 174.77079 * 20 19 17 22 22 H 1.07999 * 120.00058 * 0.02562 * 21 20 19 23 23 C 1.38813 * 120.00030 * 180.02562 * 21 20 19 24 24 N 1.31612 * 120.00204 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99687 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47219 * 90.00111 * 25 23 21 27 27 H 1.48506 * 109.46913 * 210.00225 * 25 23 21 28 28 H 1.48501 * 109.47012 * 329.99935 * 25 23 21 29 29 C 1.54819 * 110.48505 * 237.38528 * 2 1 3 30 30 H 1.08999 * 109.47233 * 298.83491 * 1 2 3 31 31 H 1.09001 * 109.47410 * 58.83873 * 1 2 3 32 32 H 1.09011 * 109.47213 * 178.83460 * 1 2 3 33 33 H 1.08995 * 109.46884 * 181.16699 * 3 2 1 34 34 H 1.09001 * 109.46875 * 301.16617 * 3 2 1 35 35 H 1.08998 * 109.46842 * 61.16850 * 3 2 1 36 36 H 1.08992 * 109.87920 * 1.27729 * 4 2 1 37 37 H 1.09004 * 109.99678 * 240.19918 * 4 2 1 38 38 H 1.09004 * 109.46599 * 306.44832 * 8 6 5 39 39 H 1.09003 * 109.47102 * 186.45566 * 8 6 5 40 40 H 1.09008 * 109.46666 * 60.00300 * 9 8 6 41 41 H 1.08995 * 109.46982 * 300.00771 * 9 8 6 42 42 H 1.08993 * 109.58456 * 6.61229 * 13 12 10 43 43 H 1.08999 * 109.58956 * 246.32326 * 13 12 10 44 44 H 1.08997 * 109.49513 * 174.51784 * 14 13 12 45 45 H 1.09005 * 109.49913 * 294.57778 * 14 13 12 46 46 H 1.08993 * 109.46403 * 58.64915 * 15 14 13 47 47 H 1.09003 * 109.46016 * 178.62976 * 15 14 13 48 48 H 1.09010 * 109.49427 * 181.31284 * 16 15 14 49 49 H 1.08995 * 109.50350 * 301.41364 * 16 15 14 50 50 H 1.09005 * 109.46827 * 189.75995 * 19 17 12 51 51 H 1.09007 * 109.47296 * 309.75169 * 19 17 12 52 52 H 0.96991 * 119.99830 * 354.77238 * 20 19 17 53 53 H 0.97001 * 120.00252 * 180.02562 * 24 23 21 54 54 H 1.08998 * 110.90662 * 144.00868 * 29 2 1 55 55 H 1.09000 * 110.90794 * 20.40188 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0668 1.4327 0.0000 4 6 2.0694 -0.7782 1.2158 5 8 2.8754 -1.8557 0.7102 6 6 2.3780 -2.1716 -0.6078 7 1 1.4712 -2.7730 -0.5420 8 6 3.4464 -2.8987 -1.4269 9 6 3.7187 -4.2706 -0.8067 10 6 4.7714 -4.9865 -1.6131 11 8 5.2565 -4.4519 -2.5876 12 7 5.1738 -6.2208 -1.2513 13 6 4.5068 -6.9338 -0.1533 14 6 4.0615 -8.3112 -0.6547 15 6 5.2659 -9.0494 -1.2432 16 6 5.8202 -8.2592 -2.4308 17 6 6.2855 -6.8813 -1.9497 18 1 7.1262 -6.9977 -1.2657 19 6 6.7115 -6.0352 -3.1512 20 7 7.3580 -4.8080 -2.6798 21 6 7.9204 -3.9417 -3.5788 22 1 7.8870 -4.1629 -4.6354 23 6 8.5335 -2.7791 -3.1322 24 7 9.0736 -1.9462 -3.9963 25 14 8.5906 -2.3962 -1.3047 26 1 9.8236 -2.9773 -0.7155 27 1 8.5937 -0.9243 -1.1073 28 1 7.3998 -2.9825 -0.6387 29 6 2.0718 -0.7817 -1.2216 30 1 -0.3634 0.4956 0.9002 31 1 -0.3634 0.5318 -0.8794 32 1 -0.3634 -1.0275 -0.0209 33 1 3.1564 1.4124 -0.0209 34 1 1.6963 1.9595 -0.8794 35 1 1.7302 1.9468 0.9003 36 1 1.2392 -1.1780 1.7980 37 1 2.6767 -0.1218 1.8390 38 1 4.3649 -2.3118 -1.4284 39 1 3.0950 -3.0261 -2.4509 40 1 2.8000 -4.8574 -0.8053 41 1 4.0699 -4.1431 0.2172 42 1 3.6366 -6.3659 0.1758 43 1 5.2005 -7.0545 0.6787 44 1 3.6529 -8.8862 0.1763 45 1 3.2978 -8.1894 -1.4230 46 1 6.0387 -9.1491 -0.4810 47 1 4.9567 -10.0394 -1.5786 48 1 6.6635 -8.7971 -2.8640 49 1 5.0405 -8.1378 -3.1828 50 1 7.4116 -6.6022 -3.7648 51 1 5.8337 -5.7787 -3.7445 52 1 7.3877 -4.6092 -1.7310 53 1 9.5024 -1.1340 -3.6841 54 1 2.9797 -0.3187 -1.6082 55 1 1.3139 -0.8591 -2.0012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690486017.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:05 Heat of formation + Delta-G solvation = -73.708070 kcal Electronic energy + Delta-G solvation = -31868.380968 eV Core-core repulsion = 27905.367061 eV Total energy + Delta-G solvation = -3963.013907 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.55076 -40.86806 -38.27615 -36.68509 -35.71906 -34.57996 -33.68036 -33.64254 -31.93808 -30.18646 -28.27768 -27.88429 -26.92878 -26.02976 -25.18420 -24.03261 -22.88745 -21.94893 -21.47394 -20.31806 -20.03770 -19.38533 -17.72334 -17.49556 -16.83111 -16.71746 -16.51245 -16.37526 -15.91248 -15.68334 -15.34131 -15.12835 -15.01613 -14.75070 -14.56099 -14.48716 -14.35041 -14.15635 -14.02135 -13.75043 -13.67698 -13.49797 -13.36156 -12.98515 -12.91929 -12.70736 -12.65542 -12.42927 -12.28885 -12.21854 -12.07206 -12.00772 -11.86129 -11.73695 -11.63696 -11.56579 -11.45929 -11.38977 -11.35195 -10.96106 -10.55883 -9.82739 -9.50961 -8.91551 -7.97651 -5.19816 1.26397 1.32175 1.38419 1.95239 2.15807 2.48558 2.89535 3.34086 3.40097 3.59750 3.64705 3.74734 3.86218 3.90500 3.96475 4.01279 4.07726 4.13392 4.27146 4.29800 4.32496 4.35137 4.37784 4.41850 4.52982 4.61809 4.66754 4.71401 4.72119 4.74552 4.78714 4.80913 4.86790 4.94381 4.98329 4.99782 5.03490 5.04898 5.08905 5.14882 5.16876 5.19112 5.25494 5.26345 5.28825 5.33809 5.39836 5.53000 5.77252 5.85262 5.99608 6.25832 6.66537 7.14796 7.56653 7.94616 8.12921 9.26206 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008682 B = 0.004320 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3224.290242 B = 6479.391865 C = 8900.062323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 C -0.139 4.139 4 C 0.049 3.951 5 O -0.399 6.399 6 C 0.086 3.914 7 H 0.097 0.903 8 C -0.094 4.094 9 C -0.120 4.120 10 C 0.467 3.533 11 O -0.516 6.516 12 N -0.618 5.618 13 C 0.102 3.898 14 C -0.127 4.127 15 C -0.113 4.113 16 C -0.119 4.119 17 C 0.142 3.858 18 H 0.065 0.935 19 C 0.167 3.833 20 N -0.723 5.723 21 C -0.192 4.192 22 H 0.047 0.953 23 C -0.071 4.071 24 N -0.993 5.993 25 Si 0.953 3.047 26 H -0.277 1.277 27 H -0.300 1.300 28 H -0.271 1.271 29 C -0.147 4.147 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.039 0.961 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.031 0.969 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.101 0.899 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.079 0.921 49 H 0.060 0.940 50 H 0.016 0.984 51 H 0.029 0.971 52 H 0.356 0.644 53 H 0.252 0.748 54 H 0.053 0.947 55 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.098 -8.623 15.210 28.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.098 4.098 3 C -0.196 4.196 4 C -0.027 4.027 5 O -0.319 6.319 6 C 0.029 3.971 7 H 0.115 0.885 8 C -0.132 4.132 9 C -0.160 4.160 10 C 0.255 3.745 11 O -0.390 6.390 12 N -0.355 5.355 13 C -0.020 4.020 14 C -0.165 4.165 15 C -0.151 4.151 16 C -0.158 4.158 17 C 0.039 3.961 18 H 0.083 0.917 19 C 0.041 3.959 20 N -0.366 5.366 21 C -0.324 4.324 22 H 0.065 0.935 23 C -0.261 4.261 24 N -0.647 5.647 25 Si 0.783 3.217 26 H -0.203 1.203 27 H -0.227 1.227 28 H -0.197 1.197 29 C -0.185 4.185 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.050 0.950 39 H 0.094 0.906 40 H 0.139 0.861 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.090 0.910 44 H 0.119 0.881 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.101 0.899 48 H 0.097 0.903 49 H 0.078 0.922 50 H 0.033 0.967 51 H 0.046 0.954 52 H 0.188 0.812 53 H 0.061 0.939 54 H 0.072 0.928 55 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.624 -8.378 14.591 28.194 hybrid contribution 0.726 1.096 0.324 1.354 sum -21.898 -7.282 14.915 27.477 Atomic orbital electron populations 1.21835 0.91457 1.02658 1.02975 1.21950 0.97761 0.96088 0.93980 1.21858 1.00072 0.94728 1.02930 1.23472 0.95103 0.88329 0.95830 1.88870 1.57821 1.53453 1.31747 1.23170 0.96043 0.95731 0.82135 0.88525 1.21292 0.98036 0.95036 0.98883 1.21582 0.98750 0.95914 0.99747 1.21374 0.84666 0.81756 0.86731 1.91106 1.53954 1.66434 1.27504 1.48151 1.34850 1.16186 1.36266 1.21974 0.97920 0.93874 0.88188 1.21897 0.97855 0.94879 1.01882 1.21501 0.98004 0.98848 0.96744 1.21845 1.01522 0.93280 0.99162 1.21405 0.88618 0.92988 0.93135 0.91702 1.20901 0.94674 0.85218 0.95149 1.42513 1.67257 1.22861 1.04016 1.18966 1.23904 0.99645 0.89877 0.93490 1.25247 1.02424 0.97268 1.01124 1.69874 1.46451 1.14025 1.34362 0.85409 0.77814 0.76368 0.82122 1.20308 1.22690 1.19706 1.23333 1.01517 0.95159 0.98499 0.91069 0.91736 0.91778 0.94202 0.91817 0.90811 0.90418 0.90233 0.94967 0.90556 0.86150 0.88922 0.88160 0.91046 0.88082 0.91851 0.91296 0.89883 0.90252 0.92158 0.96665 0.95366 0.81201 0.93874 0.92788 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 8.26 71.98 0.59 -1.04 16 2 C -0.10 -1.75 0.99 -51.19 -0.05 -1.80 16 3 C -0.14 -2.49 8.27 71.98 0.60 -1.89 16 4 C 0.05 0.97 7.03 72.36 0.51 1.48 16 5 O -0.40 -10.74 10.89 -148.98 -1.62 -12.36 16 6 C 0.09 2.06 3.33 31.28 0.10 2.16 16 7 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 8 C -0.09 -2.95 4.28 30.59 0.13 -2.81 16 9 C -0.12 -3.29 4.04 29.85 0.12 -3.17 16 10 C 0.47 16.72 7.09 87.66 0.62 17.34 16 11 O -0.52 -24.66 9.82 -3.03 -0.03 -24.69 16 12 N -0.62 -18.05 2.98 -794.96 -2.37 -20.41 16 13 C 0.10 1.86 6.32 86.36 0.55 2.41 16 14 C -0.13 -1.75 6.08 30.67 0.19 -1.57 16 15 C -0.11 -1.78 5.88 30.62 0.18 -1.60 16 16 C -0.12 -2.76 5.36 30.67 0.16 -2.60 16 17 C 0.14 4.54 2.92 44.96 0.13 4.67 16 18 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 19 C 0.17 7.36 4.87 86.38 0.42 7.78 16 20 N -0.72 -38.88 3.05 -343.44 -1.05 -39.93 16 21 C -0.19 -12.38 10.22 84.03 0.86 -11.52 16 22 H 0.05 3.32 8.06 -2.91 -0.02 3.29 16 23 C -0.07 -4.67 5.50 84.86 0.47 -4.20 16 24 N -0.99 -69.74 13.97 21.65 0.30 -69.44 16 25 Si 0.95 52.43 27.73 68.60 1.90 54.33 16 26 H -0.28 -14.47 7.11 99.48 0.71 -13.77 16 27 H -0.30 -16.59 7.11 99.48 0.71 -15.88 16 28 H -0.27 -14.34 6.52 99.48 0.65 -13.69 16 29 C -0.15 -3.33 5.70 31.90 0.18 -3.15 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.04 0.88 8.13 -2.39 -0.02 0.86 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.19 7.69 -2.39 -0.02 1.17 16 37 H 0.08 1.57 7.70 -2.38 -0.02 1.55 16 38 H 0.03 1.31 8.10 -2.39 -0.02 1.29 16 39 H 0.08 2.43 8.10 -2.39 -0.02 2.41 16 40 H 0.12 2.30 7.44 -2.38 -0.02 2.28 16 41 H 0.09 2.50 7.91 -2.39 -0.02 2.48 16 42 H 0.10 1.46 5.96 -2.39 -0.01 1.44 16 43 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 49 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.02 0.69 8.12 -2.38 -0.02 0.67 16 51 H 0.03 1.39 6.29 -2.38 -0.01 1.37 16 52 H 0.36 18.85 4.95 -92.71 -0.46 18.39 16 53 H 0.25 16.90 8.31 -92.71 -0.77 16.13 16 54 H 0.05 1.53 7.78 -2.39 -0.02 1.51 16 55 H 0.10 1.81 7.86 -2.39 -0.02 1.79 16 Total: -1.00 -85.75 411.71 3.22 -82.53 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: 0.32 Total: 29.50 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 5.76 Total: 0.48 kcal Atomic # 7 Polarization: -126.67 SS G_CDS: -3.11 Total: -129.78 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -1.65 Total: -37.05 kcal Atomic # 14 Polarization: 52.43 SS G_CDS: 1.90 Total: 54.33 kcal Total: -85.75 3.22 -82.53 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690486017.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.818 kcal (2) G-P(sol) polarization free energy of solvation -85.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds