Wall clock time and date at job start Tue Mar 31 2020 21:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00241 * 2 1 4 4 C 1.52999 * 109.47195 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.46777 * 185.06773 * 4 3 2 6 6 C 1.50692 * 115.55270 * 293.88830 * 5 4 3 7 7 O 1.21282 * 120.00189 * 99.02638 * 6 5 4 8 8 N 1.34777 * 119.99970 * 279.03116 * 6 5 4 9 9 C 1.46504 * 120.00031 * 185.26574 * 8 6 5 10 10 H 1.09002 * 110.32109 * 37.01031 * 9 8 6 11 11 C 1.52524 * 110.24994 * 275.00151 * 9 8 6 12 12 C 1.46240 * 114.27837 * 151.62111 * 11 9 8 13 13 N 1.50168 * 107.53212 * 58.40189 * 12 11 9 14 14 C 1.36939 * 120.53858 * 109.56851 * 13 12 11 15 15 H 1.07999 * 120.00394 * 159.84064 * 14 13 12 16 16 C 1.38812 * 119.99827 * 339.84610 * 14 13 12 17 17 N 1.31623 * 120.00144 * 340.88880 * 16 14 13 18 18 Si 1.86803 * 120.00017 * 160.89074 * 16 14 13 19 19 H 1.48501 * 109.46956 * 90.00033 * 18 16 14 20 20 H 1.48505 * 109.47012 * 209.99541 * 18 16 14 21 21 H 1.48493 * 109.47204 * 329.99703 * 18 16 14 22 22 C 1.43434 * 118.92659 * 289.59119 * 13 12 11 23 23 C 1.54896 * 116.08220 * 91.56887 * 22 13 12 24 24 C 1.53008 * 109.35883 * 78.84491 * 23 22 13 25 25 C 1.52999 * 109.36069 * 198.57037 * 23 22 13 26 26 C 1.50119 * 110.24943 * 159.01360 * 9 8 6 27 27 C 1.53002 * 117.51682 * 79.59332 * 5 4 3 28 28 C 1.53002 * 60.00171 * 107.47633 * 27 5 4 29 29 H 1.08999 * 109.46793 * 299.99575 * 1 2 3 30 30 H 1.08995 * 109.47138 * 60.00122 * 1 2 3 31 31 H 1.09010 * 109.46952 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47126 * 59.99718 * 3 2 1 33 33 H 1.09009 * 109.46889 * 300.00214 * 3 2 1 34 34 H 1.08996 * 109.47596 * 65.06849 * 4 3 2 35 35 H 1.09000 * 109.47028 * 305.06732 * 4 3 2 36 36 H 0.96997 * 120.00242 * 5.26796 * 8 6 5 37 37 H 1.08998 * 108.52513 * 30.37899 * 11 9 8 38 38 H 1.08998 * 108.52232 * 272.86116 * 11 9 8 39 39 H 1.08996 * 109.85024 * 177.91186 * 12 11 9 40 40 H 1.08999 * 109.84644 * 298.89793 * 12 11 9 41 41 H 0.96995 * 120.00036 * 180.02562 * 17 16 14 42 42 H 1.09006 * 108.15976 * 213.28963 * 22 13 12 43 43 H 1.09005 * 108.15513 * 330.06120 * 22 13 12 44 44 H 1.09003 * 109.46938 * 60.00154 * 24 23 22 45 45 H 1.09000 * 109.46851 * 179.97438 * 24 23 22 46 46 H 1.08995 * 109.47132 * 300.00226 * 24 23 22 47 47 H 1.09003 * 109.46614 * 60.00273 * 25 23 22 48 48 H 1.08998 * 109.46752 * 179.97438 * 25 23 22 49 49 H 1.08994 * 109.46985 * 299.99773 * 25 23 22 50 50 H 1.09004 * 109.21150 * 96.31816 * 26 9 8 51 51 H 1.09007 * 109.17447 * 336.98019 * 26 9 8 52 52 H 1.09002 * 117.49815 * 214.97257 * 27 5 4 53 53 H 1.09002 * 117.50161 * 359.97438 * 27 5 4 54 54 H 1.08996 * 117.49863 * 252.50666 * 28 27 5 55 55 H 1.09006 * 117.49752 * 107.48466 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 4.1573 2.5767 0.1268 6 6 3.9267 3.5010 -1.0408 7 8 3.0509 4.3383 -0.9877 8 7 4.6936 3.3972 -2.1442 9 6 4.5477 4.3679 -3.2318 10 1 4.3527 5.3616 -2.8286 11 6 3.4189 3.9469 -4.1672 12 6 2.7568 5.0584 -4.8489 13 7 3.8036 5.7966 -5.6325 14 6 3.8189 5.7380 -7.0006 15 1 4.3377 6.4966 -7.5679 16 6 3.1676 4.7036 -7.6583 17 7 2.8651 3.5987 -7.0101 18 14 2.7202 4.8797 -9.4634 19 1 3.8381 4.3767 -10.3017 20 1 1.4942 4.0917 -9.7487 21 1 2.4728 6.3104 -9.7748 22 6 4.7876 6.5636 -4.9249 23 6 6.0995 5.8226 -4.5655 24 6 6.9994 5.7562 -5.8012 25 6 6.8226 6.5827 -3.4519 26 6 5.7849 4.3857 -4.0819 27 6 4.2119 3.2015 1.5224 28 6 5.4939 2.6886 0.8631 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.6886 1.8463 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8631 0.7242 -0.9327 35 1 3.8513 0.5671 0.8402 36 1 5.3423 2.6798 -2.2183 37 1 2.6734 3.4028 -3.5873 38 1 3.8266 3.2724 -4.9202 39 1 1.9910 4.6754 -5.5235 40 1 2.3046 5.7258 -4.1153 41 1 2.4103 2.8758 -7.4698 42 1 5.0433 7.4317 -5.5327 43 1 4.3379 6.9210 -3.9985 44 1 7.2319 6.7671 -6.1361 45 1 7.9234 5.2354 -5.5501 46 1 6.4840 5.2192 -6.5975 47 1 6.1811 6.6353 -2.5722 48 1 7.7460 6.0624 -3.1972 49 1 7.0556 7.5915 -3.7926 50 1 5.6345 3.7408 -4.9477 51 1 6.6259 4.0116 -3.4979 52 1 4.0809 4.2811 1.5959 53 1 3.8044 2.6209 2.3500 54 1 5.9299 1.7706 1.2571 55 1 6.2063 3.4308 0.5029 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692275257.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:25 Heat of formation + Delta-G solvation = -57.619251 kcal Electronic energy + Delta-G solvation = -32118.772149 eV Core-core repulsion = 28156.455905 eV Total energy + Delta-G solvation = -3962.316244 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.50904 -40.13147 -38.87635 -37.64542 -36.26204 -35.91537 -33.25323 -32.28058 -32.01585 -29.16679 -28.05503 -27.51417 -27.31287 -25.63943 -24.85361 -23.97469 -23.27753 -22.74163 -21.56033 -20.65528 -19.31436 -18.58877 -17.92310 -17.46355 -17.27052 -16.93631 -16.84192 -16.24392 -15.89042 -15.84926 -15.69712 -15.34823 -15.22952 -14.86719 -14.67255 -14.31153 -14.10457 -13.85524 -13.56776 -13.38418 -13.25255 -13.10972 -13.06367 -12.90321 -12.66178 -12.52234 -12.50275 -12.40266 -12.38609 -12.28309 -12.21857 -11.93181 -11.70608 -11.57211 -11.46554 -11.39463 -11.16844 -11.05778 -10.97971 -10.71838 -10.60849 -10.47133 -9.88639 -8.66272 -7.78957 -5.17011 1.46555 1.50475 1.57724 1.62605 2.17698 2.52207 2.55690 2.90808 3.33946 3.55319 3.66118 3.75676 3.91125 3.95583 3.97136 4.05523 4.08119 4.15716 4.28302 4.42230 4.45775 4.47540 4.47723 4.52130 4.54918 4.73723 4.76219 4.76800 4.77867 4.83986 4.88428 4.93740 4.95679 4.98411 5.01338 5.04987 5.07855 5.12067 5.20463 5.23714 5.26205 5.31808 5.34249 5.47627 5.52401 5.65771 5.68540 5.73851 5.79952 6.05272 6.11432 6.42677 6.64534 7.18199 7.31931 7.92493 8.43837 9.25691 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011265 B = 0.003745 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.016959 B = 7475.498622 C = 9330.103043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.064 3.936 4 C -0.063 4.063 5 C -0.171 4.171 6 C 0.543 3.457 7 O -0.583 6.583 8 N -0.705 5.705 9 C 0.164 3.836 10 H 0.066 0.934 11 C -0.108 4.108 12 C 0.170 3.830 13 N -0.596 5.596 14 C -0.243 4.243 15 H 0.066 0.934 16 C -0.045 4.045 17 N -0.920 5.920 18 Si 0.953 3.047 19 H -0.288 1.288 20 H -0.298 1.298 21 H -0.279 1.279 22 C 0.162 3.838 23 C -0.085 4.085 24 C -0.122 4.122 25 C -0.126 4.126 26 C -0.090 4.090 27 C -0.146 4.146 28 C -0.130 4.130 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.019 0.981 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.410 0.590 37 H 0.011 0.989 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.000 1.000 41 H 0.244 0.756 42 H 0.031 0.969 43 H 0.026 0.974 44 H 0.051 0.949 45 H 0.059 0.941 46 H 0.034 0.966 47 H 0.043 0.957 48 H 0.068 0.932 49 H 0.059 0.941 50 H 0.047 0.953 51 H 0.075 0.925 52 H 0.086 0.914 53 H 0.124 0.876 54 H 0.134 0.866 55 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.221 -4.930 17.641 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.013 4.013 4 C -0.100 4.100 5 C -0.174 4.174 6 C 0.330 3.670 7 O -0.462 6.462 8 N -0.355 5.355 9 C 0.059 3.941 10 H 0.084 0.916 11 C -0.148 4.148 12 C 0.046 3.954 13 N -0.317 5.317 14 C -0.373 4.373 15 H 0.084 0.916 16 C -0.240 4.240 17 N -0.567 5.567 18 Si 0.783 3.217 19 H -0.215 1.215 20 H -0.225 1.225 21 H -0.204 1.204 22 C 0.034 3.966 23 C -0.089 4.089 24 C -0.179 4.179 25 C -0.184 4.184 26 C -0.128 4.128 27 C -0.183 4.183 28 C -0.166 4.166 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.246 0.754 37 H 0.029 0.971 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.019 0.981 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.044 0.956 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.053 0.947 47 H 0.063 0.937 48 H 0.087 0.913 49 H 0.078 0.922 50 H 0.065 0.935 51 H 0.094 0.906 52 H 0.104 0.896 53 H 0.142 0.858 54 H 0.152 0.848 55 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.624 -4.595 17.577 19.338 hybrid contribution -0.922 -0.047 -1.646 1.887 sum 5.702 -4.642 15.931 17.546 Atomic orbital electron populations 1.22920 0.79780 1.03994 1.00392 1.87776 1.21241 1.28202 1.95529 1.22463 0.94962 0.84116 0.99720 1.20876 0.91809 0.92585 1.04780 1.21241 1.06887 0.96533 0.92767 1.20126 0.80161 0.83275 0.83406 1.90681 1.33635 1.39133 1.82764 1.46107 1.40515 1.31773 1.17151 1.20082 0.96380 0.91517 0.86094 0.91614 1.21011 0.96947 0.99875 0.96968 1.20008 0.92107 0.91204 0.92102 1.44314 1.27810 1.57471 1.02118 1.19351 1.30240 1.05074 0.82602 0.91625 1.25393 1.03230 0.94894 1.00514 1.70124 1.45690 1.04536 1.36367 0.85497 0.77048 0.77121 0.82069 1.21459 1.22493 1.20409 1.20627 0.88785 0.92929 0.94246 1.21848 0.96728 0.94760 0.95574 1.21655 0.98224 1.00992 0.97037 1.21753 0.99741 1.00134 0.96764 1.21616 0.95619 0.97636 0.97951 1.23090 1.01344 1.01148 0.92760 1.23271 0.88959 1.04683 0.99721 0.92824 0.94866 0.87658 0.92339 0.96276 0.90827 0.87333 0.75391 0.97051 0.91057 0.91424 0.98148 0.94614 0.95107 0.95581 0.92956 0.92226 0.94725 0.93739 0.91271 0.92191 0.93454 0.90606 0.89582 0.85786 0.84779 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.41 -10.39 10.70 -148.98 -1.59 -11.98 16 3 C 0.06 1.63 5.75 71.98 0.41 2.04 16 4 C -0.06 -1.29 5.46 30.60 0.17 -1.12 16 5 C -0.17 -3.65 1.86 -52.93 -0.10 -3.74 16 6 C 0.54 16.94 6.36 87.65 0.56 17.50 16 7 O -0.58 -23.77 16.79 -3.04 -0.05 -23.82 16 8 N -0.71 -21.15 5.01 -447.73 -2.24 -23.39 16 9 C 0.16 6.05 2.06 43.90 0.09 6.14 16 10 H 0.07 2.70 5.35 -2.39 -0.01 2.69 16 11 C -0.11 -4.96 4.72 28.36 0.13 -4.82 16 12 C 0.17 8.62 5.25 83.58 0.44 9.06 16 13 N -0.60 -29.43 2.61 -707.83 -1.85 -31.28 16 14 C -0.24 -12.96 8.98 84.03 0.75 -12.20 16 15 H 0.07 3.47 7.88 -2.91 -0.02 3.45 16 16 C -0.05 -2.46 4.97 84.86 0.42 -2.04 16 17 N -0.92 -51.99 9.35 21.65 0.20 -51.78 16 18 Si 0.95 44.82 29.59 68.60 2.03 46.85 16 19 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 C 0.16 6.71 4.01 87.59 0.35 7.06 16 23 C -0.09 -2.88 0.77 -50.90 -0.04 -2.92 16 24 C -0.12 -4.06 8.29 71.98 0.60 -3.47 16 25 C -0.13 -3.34 8.20 71.98 0.59 -2.75 16 26 C -0.09 -3.09 4.14 30.30 0.13 -2.96 16 27 C -0.15 -2.55 9.88 30.60 0.30 -2.25 16 28 C -0.13 -1.80 9.92 30.60 0.30 -1.50 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.02 0.61 7.89 -2.38 -0.02 0.59 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.11 1.65 8.09 -2.39 -0.02 1.63 16 36 H 0.41 9.79 8.45 -92.71 -0.78 9.00 16 37 H 0.01 0.52 7.90 -2.39 -0.02 0.51 16 38 H 0.07 3.65 5.53 -2.39 -0.01 3.64 16 39 H 0.07 3.86 5.78 -2.39 -0.01 3.85 16 40 H 0.00 0.02 8.12 -2.39 -0.02 0.00 16 41 H 0.24 13.68 8.31 -92.71 -0.77 12.91 16 42 H 0.03 1.27 7.83 -2.38 -0.02 1.26 16 43 H 0.03 1.07 6.65 -2.38 -0.02 1.06 16 44 H 0.05 1.62 8.13 -2.39 -0.02 1.60 16 45 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 46 H 0.03 1.41 7.45 -2.39 -0.02 1.39 16 47 H 0.04 1.21 7.55 -2.39 -0.02 1.19 16 48 H 0.07 1.53 8.12 -2.39 -0.02 1.51 16 49 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.05 1.97 6.66 -2.38 -0.02 1.96 16 51 H 0.08 2.08 7.62 -2.38 -0.02 2.06 16 52 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 53 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 54 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 55 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -67.40 419.89 2.92 -64.47 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.07 Total: 27.14 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 6.36 Total: 3.80 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -3.89 Total: -106.46 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -1.65 Total: -35.80 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -67.40 2.92 -64.47 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692275257.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.855 kcal (2) G-P(sol) polarization free energy of solvation -67.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds