Wall clock time and date at job start Tue Mar 31 2020 20:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00309 * 2 1 4 4 H 1.48507 * 109.46994 * 270.00608 * 3 2 1 5 5 H 1.48503 * 109.47070 * 30.00297 * 3 2 1 6 6 H 1.48494 * 109.47166 * 150.00243 * 3 2 1 7 7 C 1.38813 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99588 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00230 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00159 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47179 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46965 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.50071 * 55.06385 * 12 11 10 14 14 C 1.53036 * 109.50226 * 294.99617 * 12 11 10 15 15 C 1.53035 * 109.54170 * 178.68372 * 14 12 11 16 16 C 1.53196 * 109.31447 * 61.36769 * 15 14 12 17 17 N 1.46927 * 108.77062 * 305.36831 * 16 15 14 18 18 C 1.34776 * 120.62643 * 233.57964 * 17 16 15 19 19 O 1.21282 * 119.99940 * 179.97438 * 18 17 16 20 20 C 1.50698 * 120.00035 * 0.02562 * 18 17 16 21 21 C 1.53006 * 109.47184 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.47127 * 179.97438 * 21 20 18 23 23 C 1.53180 * 109.54595 * 294.55347 * 22 21 20 24 24 C 1.53088 * 109.16799 * 183.15531 * 23 22 21 25 25 O 1.42901 * 109.41556 * 57.60236 * 24 23 22 26 26 C 1.42896 * 114.10135 * 298.85019 * 25 24 23 27 27 C 1.53089 * 109.42003 * 61.15139 * 26 25 24 28 28 C 1.46924 * 118.74473 * 53.85951 * 17 16 15 29 29 H 0.97003 * 119.99334 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99725 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.47227 * 59.99892 * 10 9 7 32 32 H 1.09003 * 109.46634 * 299.99956 * 10 9 7 33 33 H 1.08994 * 109.47315 * 59.99718 * 11 10 9 34 34 H 1.08999 * 109.46442 * 299.99676 * 11 10 9 35 35 H 1.09004 * 109.45523 * 58.66307 * 14 12 11 36 36 H 1.08997 * 109.46131 * 298.71182 * 14 12 11 37 37 H 1.08996 * 109.49879 * 301.41641 * 15 14 12 38 38 H 1.09003 * 109.49559 * 181.32053 * 15 14 12 39 39 H 1.08990 * 109.58966 * 185.57541 * 16 15 14 40 40 H 1.08998 * 109.70001 * 65.21932 * 16 15 14 41 41 H 1.09001 * 109.47612 * 59.99945 * 20 18 17 42 42 H 1.09001 * 109.47122 * 299.99777 * 20 18 17 43 43 H 1.09001 * 109.47002 * 299.99404 * 21 20 18 44 44 H 1.08993 * 109.46955 * 59.99842 * 21 20 18 45 45 H 1.09000 * 109.54687 * 54.81880 * 22 21 20 46 46 H 1.09001 * 109.52126 * 303.06206 * 23 22 21 47 47 H 1.09004 * 109.52045 * 63.24249 * 23 22 21 48 48 H 1.09000 * 109.47510 * 297.62589 * 24 23 22 49 49 H 1.08993 * 109.48916 * 177.59966 * 24 23 22 50 50 H 1.09005 * 109.47921 * 301.16695 * 26 25 24 51 51 H 1.09006 * 109.49260 * 181.14882 * 26 25 24 52 52 H 1.09001 * 109.52424 * 182.48312 * 27 26 25 53 53 H 1.09004 * 109.56695 * 62.33172 * 27 26 25 54 54 H 1.08994 * 109.58761 * 65.91745 * 28 17 16 55 55 H 1.08992 * 109.58804 * 186.35361 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1121 -2.4710 -0.0022 11 6 5.6163 -2.1915 -0.0020 12 6 6.3812 -3.5165 -0.0025 13 1 6.0536 -4.1254 -0.8451 14 6 6.1086 -4.2643 1.3046 15 6 6.8471 -5.6046 1.2911 16 6 8.3542 -5.3517 1.1842 17 7 8.6100 -4.5098 0.0075 18 6 9.4952 -4.8951 -0.9330 19 8 9.6972 -4.1915 -1.9000 20 6 10.2330 -6.2005 -0.7837 21 6 11.1685 -6.3973 -1.9784 22 6 11.9180 -7.7224 -1.8264 23 6 12.8436 -7.6508 -0.6080 24 6 13.6467 -8.9504 -0.5098 25 8 14.3828 -9.1464 -1.7189 26 6 13.5669 -9.2680 -2.8857 27 6 12.7605 -7.9812 -3.0792 28 6 7.8873 -3.2372 -0.1213 29 1 -0.4849 0.8401 0.0004 30 1 3.8646 -0.3622 -0.0007 31 1 3.8484 -3.0419 -0.8924 32 1 3.8490 -3.0431 0.8876 33 1 5.8797 -1.6207 0.8885 34 1 5.8796 -1.6192 -0.8915 35 1 5.0377 -4.4407 1.4054 36 1 6.4584 -3.6654 2.1454 37 1 6.5156 -6.1941 0.4363 38 1 6.6336 -6.1469 2.2123 39 1 8.8773 -6.3016 1.0746 40 1 8.7059 -4.8423 2.0814 41 1 9.5162 -7.0208 -0.7451 42 1 10.8169 -6.1847 0.1367 43 1 10.5843 -6.4134 -2.8984 44 1 11.8853 -5.5772 -2.0174 45 1 11.2018 -8.5335 -1.6947 46 1 13.5262 -6.8082 -0.7181 47 1 12.2473 -7.5220 0.2953 48 1 12.9657 -9.7880 -0.3592 49 1 14.3379 -8.8882 0.3306 50 1 12.8848 -10.1099 -2.7661 51 1 14.2004 -9.4346 -3.7569 52 1 12.1048 -8.0887 -3.9434 53 1 13.4407 -7.1448 -3.2400 54 1 8.1993 -2.5578 0.6719 55 1 8.1021 -2.7916 -1.0925 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698685335.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:08 Heat of formation + Delta-G solvation = -124.881557 kcal Electronic energy + Delta-G solvation = -29523.263215 eV Core-core repulsion = 25558.030259 eV Total energy + Delta-G solvation = -3965.232956 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.35753 -40.30155 -38.99457 -37.08621 -36.37053 -35.03158 -33.40394 -32.68813 -32.20561 -31.78756 -29.50815 -27.32423 -26.16893 -25.39930 -24.44538 -23.46970 -23.13779 -22.57404 -21.18252 -20.89509 -19.86355 -19.54980 -18.16718 -17.06584 -17.03096 -16.82194 -16.68988 -16.61279 -16.07004 -15.94988 -15.73782 -15.46918 -15.18863 -14.94998 -14.86971 -14.76451 -14.54399 -14.22968 -14.15605 -13.68532 -13.60967 -13.24305 -13.12953 -13.07586 -13.00976 -12.83908 -12.45975 -12.35619 -12.22960 -12.13639 -12.12639 -11.96707 -11.84583 -11.74492 -11.66817 -11.55616 -11.28104 -11.23182 -11.13456 -10.97341 -10.75852 -10.40198 -9.61834 -9.31493 -8.05573 -5.39425 1.36027 1.39855 1.47226 1.63692 2.01912 2.46296 3.02926 3.25743 3.48328 3.53224 3.70255 3.75390 3.80568 3.86655 3.97737 4.02944 4.11104 4.11583 4.24715 4.26276 4.33219 4.37654 4.42488 4.47963 4.51796 4.55330 4.62220 4.63491 4.68957 4.74750 4.82016 4.83885 4.84519 4.86319 4.90137 4.90888 4.95798 5.02151 5.08601 5.14093 5.18592 5.21303 5.22487 5.30319 5.32310 5.42361 5.50268 5.50776 5.56445 5.72570 6.18618 6.32548 6.45197 7.05146 7.19102 7.81552 8.00974 9.15876 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.029773 B = 0.001656 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.235777 B =16904.199881 C =17233.965431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.064 4.064 3 Si 0.958 3.042 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.250 1.250 7 C -0.240 4.240 8 H 0.055 0.945 9 N -0.761 5.761 10 C 0.156 3.844 11 C -0.113 4.113 12 C -0.084 4.084 13 H 0.060 0.940 14 C -0.119 4.119 15 C -0.130 4.130 16 C 0.103 3.897 17 N -0.612 5.612 18 C 0.503 3.497 19 O -0.594 6.594 20 C -0.131 4.131 21 C -0.093 4.093 22 C -0.084 4.084 23 C -0.151 4.151 24 C 0.054 3.946 25 O -0.411 6.411 26 C 0.059 3.941 27 C -0.153 4.153 28 C 0.119 3.881 29 H 0.259 0.741 30 H 0.366 0.634 31 H 0.014 0.986 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.088 0.912 46 H 0.058 0.942 47 H 0.096 0.904 48 H 0.062 0.938 49 H 0.100 0.900 50 H 0.061 0.939 51 H 0.097 0.903 52 H 0.078 0.922 53 H 0.058 0.942 54 H 0.078 0.922 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.573 -22.179 3.226 38.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.256 4.256 3 Si 0.784 3.216 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.174 1.174 7 C -0.371 4.371 8 H 0.073 0.927 9 N -0.407 5.407 10 C 0.030 3.970 11 C -0.151 4.151 12 C -0.104 4.104 13 H 0.079 0.921 14 C -0.157 4.157 15 C -0.168 4.168 16 C -0.018 4.018 17 N -0.344 5.344 18 C 0.294 3.706 19 O -0.475 6.475 20 C -0.170 4.170 21 C -0.131 4.131 22 C -0.102 4.102 23 C -0.188 4.188 24 C -0.022 4.022 25 O -0.330 6.330 26 C -0.018 4.018 27 C -0.191 4.191 28 C -0.004 4.004 29 H 0.067 0.933 30 H 0.199 0.801 31 H 0.032 0.968 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.133 0.867 40 H 0.103 0.897 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.106 0.894 46 H 0.077 0.923 47 H 0.115 0.885 48 H 0.081 0.919 49 H 0.118 0.882 50 H 0.080 0.920 51 H 0.115 0.885 52 H 0.097 0.903 53 H 0.076 0.924 54 H 0.096 0.904 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 31.688 -21.948 2.735 38.643 hybrid contribution -0.749 1.560 -0.444 1.787 sum 30.939 -20.387 2.292 37.123 Atomic orbital electron populations 1.69894 1.07138 1.26774 1.59526 1.25552 0.96199 1.01396 1.02433 0.85369 0.78727 0.79355 0.78100 1.20597 1.21901 1.17443 1.19060 0.82813 0.93527 1.41672 0.92711 1.42766 1.02555 1.04377 1.91010 1.20813 0.90997 0.87188 0.98016 1.21633 0.93398 0.97697 1.02394 1.21370 0.93850 0.95871 0.99292 0.92112 1.21653 1.00861 0.96843 0.96331 1.21912 0.94540 0.96784 1.03583 1.22071 0.96628 0.95971 0.87158 1.48300 1.40925 1.21644 1.23511 1.21520 0.79198 0.88763 0.81147 1.90686 1.66684 1.57478 1.32699 1.21797 0.99464 0.93729 1.01993 1.21287 0.97457 0.97089 0.97253 1.21191 0.96767 0.97323 0.94919 1.22311 0.98796 0.98517 0.99192 1.22753 0.96038 0.96608 0.86790 1.87902 1.35252 1.93431 1.16421 1.22669 0.94504 0.96414 0.88196 1.22241 0.99307 0.98749 0.98777 1.21602 0.90562 0.85813 1.02449 0.93262 0.80109 0.96804 0.94959 0.90839 0.92235 0.92162 0.90908 0.92057 0.88272 0.86719 0.89672 0.86430 0.86170 0.92847 0.93135 0.89393 0.92286 0.88549 0.91944 0.88172 0.92044 0.88521 0.90300 0.92355 0.90366 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.97 13.97 21.65 0.30 -63.66 16 2 C -0.06 -3.87 5.50 84.86 0.47 -3.40 16 3 Si 0.96 46.23 27.73 68.60 1.90 48.13 16 4 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.25 -10.82 6.52 99.48 0.65 -10.17 16 7 C -0.24 -14.11 10.47 84.03 0.88 -13.23 16 8 H 0.05 3.52 8.06 -2.91 -0.02 3.50 16 9 N -0.76 -36.71 5.41 -343.45 -1.86 -38.57 16 10 C 0.16 5.98 6.02 86.38 0.52 6.50 16 11 C -0.11 -3.26 4.80 30.59 0.15 -3.12 16 12 C -0.08 -1.94 2.35 -10.57 -0.02 -1.97 16 13 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 14 C -0.12 -2.24 4.95 30.62 0.15 -2.09 16 15 C -0.13 -1.58 6.08 30.67 0.19 -1.39 16 16 C 0.10 0.99 6.34 86.36 0.55 1.54 16 17 N -0.61 -10.81 2.97 -818.08 -2.43 -13.23 16 18 C 0.50 10.26 7.70 87.66 0.67 10.94 16 19 O -0.59 -18.20 15.39 -3.04 -0.05 -18.24 16 20 C -0.13 -1.38 3.81 29.85 0.11 -1.27 16 21 C -0.09 -1.26 3.98 30.60 0.12 -1.14 16 22 C -0.08 -0.77 2.27 -10.68 -0.02 -0.79 16 23 C -0.15 -1.18 5.10 30.68 0.16 -1.02 16 24 C 0.05 0.47 6.84 72.01 0.49 0.96 16 25 O -0.41 -5.92 10.76 -148.98 -1.60 -7.52 16 26 C 0.06 0.61 6.84 72.01 0.49 1.11 16 27 C -0.15 -1.67 5.42 30.68 0.17 -1.51 16 28 C 0.12 2.60 5.75 86.51 0.50 3.10 16 29 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 30 H 0.37 16.72 5.53 -92.71 -0.51 16.21 16 31 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.03 1.23 6.54 -2.39 -0.02 1.22 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.06 1.34 6.51 -2.39 -0.02 1.33 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 38 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.11 0.40 5.93 -2.39 -0.01 0.39 16 40 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.12 0.71 7.69 -2.39 -0.02 0.70 16 42 H 0.12 0.65 6.46 -2.39 -0.02 0.63 16 43 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 44 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 45 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.10 0.33 6.75 -2.39 -0.02 0.31 16 48 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 49 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 51 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 52 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 53 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 54 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 55 H 0.07 1.82 7.00 -2.39 -0.02 1.80 16 Total: -1.00 -79.18 414.59 2.11 -77.07 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.27 Total: 22.81 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 5.57 Total: -6.78 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -3.98 Total: -115.46 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -1.65 Total: -25.77 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.90 Total: 48.13 kcal Total: -79.18 2.11 -77.07 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698685335.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.811 kcal (2) G-P(sol) polarization free energy of solvation -79.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds