Wall clock time and date at job start Tue Mar 31 2020 20:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99858 * 2 1 4 4 H 1.48508 * 109.47122 * 269.99589 * 3 2 1 5 5 H 1.48502 * 109.47453 * 29.99456 * 3 2 1 6 6 H 1.48496 * 109.47196 * 150.00116 * 3 2 1 7 7 C 1.38811 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00125 * 201.96929 * 7 2 1 9 9 N 1.36942 * 119.99776 * 21.95930 * 7 2 1 10 10 C 1.46493 * 119.99932 * 33.86905 * 9 7 2 11 11 C 1.53006 * 109.47420 * 95.48508 * 10 9 7 12 12 N 1.46492 * 109.47038 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99689 * 179.97438 * 12 11 10 14 14 O 1.21273 * 120.00262 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99790 * 179.97438 * 13 12 11 16 16 C 1.53004 * 109.46778 * 180.02562 * 15 13 12 17 17 H 1.08997 * 110.43930 * 303.90884 * 16 15 13 18 18 C 1.54811 * 110.48727 * 181.21729 * 16 15 13 19 19 C 1.54989 * 102.09493 * 220.44576 * 18 16 15 20 20 O 1.44374 * 103.49295 * 37.02266 * 19 18 16 21 21 C 1.43738 * 106.97533 * 319.94326 * 20 19 18 22 22 C 1.46498 * 119.99802 * 213.86463 * 9 7 2 23 23 C 1.54242 * 108.89850 * 61.40110 * 22 9 7 24 24 C 1.50544 * 108.48506 * 159.17705 * 23 22 9 25 25 C 1.54070 * 112.41949 * 94.26404 * 24 23 22 26 26 C 1.54073 * 112.81355 * 318.28267 * 25 24 23 27 27 C 1.50472 * 112.49232 * 318.27770 * 26 25 24 28 28 C 1.45545 * 108.89439 * 298.60380 * 22 9 7 29 29 H 0.96995 * 120.00261 * 0.02562 * 1 2 3 30 30 H 1.09009 * 109.47092 * 335.48526 * 10 9 7 31 31 H 1.08994 * 109.47185 * 215.48757 * 10 9 7 32 32 H 1.08999 * 109.46640 * 299.99776 * 11 10 9 33 33 H 1.08995 * 109.46822 * 59.99796 * 11 10 9 34 34 H 0.96999 * 120.00738 * 359.97438 * 12 11 10 35 35 H 1.08999 * 109.47192 * 299.99759 * 15 13 12 36 36 H 1.08995 * 109.47411 * 60.00477 * 15 13 12 37 37 H 1.09005 * 110.90887 * 338.64794 * 18 16 15 38 38 H 1.09000 * 110.90734 * 102.24542 * 18 16 15 39 39 H 1.09001 * 110.61795 * 278.52200 * 19 18 16 40 40 H 1.09000 * 110.61802 * 155.53019 * 19 18 16 41 41 H 1.09006 * 109.88053 * 267.08574 * 21 20 19 42 42 H 1.09001 * 110.00750 * 146.00817 * 21 20 19 43 43 H 1.08997 * 108.87087 * 180.02562 * 22 9 7 44 44 H 1.09007 * 109.62213 * 278.97224 * 23 22 9 45 45 H 1.08998 * 109.62917 * 39.54720 * 23 22 9 46 46 H 1.09005 * 108.92297 * 333.50958 * 24 23 22 47 47 H 1.08995 * 108.83761 * 214.95979 * 24 23 22 48 48 H 1.08992 * 108.81934 * 197.41777 * 25 24 23 49 49 H 1.09001 * 108.72367 * 79.07477 * 25 24 23 50 50 H 1.09003 * 108.87284 * 197.50582 * 26 25 24 51 51 H 1.09002 * 108.79709 * 79.00303 * 26 25 24 52 52 H 1.08991 * 109.62968 * 334.44842 * 27 26 25 53 53 H 1.09003 * 109.78811 * 213.95771 * 27 26 25 54 54 H 1.08994 * 108.90106 * 303.44701 * 28 22 9 55 55 H 1.09006 * 108.89338 * 61.94205 * 28 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0315 -1.2359 0.3505 9 7 1.4001 -2.3452 -0.4424 10 6 0.4236 -2.2790 -1.5324 11 6 1.1196 -2.5846 -2.8602 12 7 0.1431 -2.5178 -3.9501 13 6 0.5323 -2.7526 -5.2190 14 8 1.6908 -3.0197 -5.4583 15 6 -0.4724 -2.6844 -6.3402 16 6 0.2238 -2.9899 -7.6680 17 1 1.0603 -2.3089 -7.8246 18 6 -0.7819 -2.8962 -8.8412 19 6 -0.3666 -4.1020 -9.7220 20 8 -0.0068 -5.1150 -8.7583 21 6 0.7061 -4.4531 -7.7001 22 6 1.7241 -3.6343 0.1736 23 6 1.3427 -3.5841 1.6673 24 6 1.1851 -4.9953 2.1673 25 6 2.4754 -5.5381 2.8111 26 6 3.7427 -5.1568 2.0223 27 6 3.5553 -5.2851 0.5348 28 6 3.1390 -3.9102 -0.0270 29 1 -0.4850 0.8400 -0.0004 30 1 -0.0105 -1.2798 -1.5711 31 1 -0.3650 -3.0111 -1.3586 32 1 1.9081 -1.8524 -3.0339 33 1 1.5536 -3.5837 -2.8214 34 1 -0.7836 -2.3045 -3.7588 35 1 -1.2606 -3.4170 -6.1667 36 1 -0.9067 -1.6855 -6.3787 37 1 -1.8061 -3.0087 -8.4855 38 1 -0.6608 -1.9584 -9.3834 39 1 0.4892 -3.8447 -10.3461 40 1 -1.2037 -4.4356 -10.3353 41 1 1.7776 -4.4859 -7.8978 42 1 0.4905 -4.9354 -6.7466 43 1 1.1401 -4.4148 -0.3141 44 1 2.1294 -3.0804 2.2292 45 1 0.4020 -3.0469 1.7871 46 1 0.9109 -5.6382 1.3309 47 1 0.3850 -5.0192 2.9070 48 1 2.4100 -6.6246 2.8675 49 1 2.5570 -5.1384 3.8219 50 1 4.5602 -5.8079 2.3322 51 1 4.0055 -4.1253 2.2570 52 1 2.7755 -6.0173 0.3258 53 1 4.4894 -5.6024 0.0711 54 1 3.3558 -3.8848 -1.0948 55 1 3.7235 -3.1348 0.4685 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699685342.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:04 Heat of formation + Delta-G solvation = -103.545428 kcal Electronic energy + Delta-G solvation = -30742.559685 eV Core-core repulsion = 26778.251933 eV Total energy + Delta-G solvation = -3964.307752 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.14027 -40.17755 -39.76326 -37.26678 -35.50961 -34.47919 -33.65736 -32.86412 -31.74420 -30.80527 -29.46439 -27.70812 -26.18851 -25.47856 -24.58948 -23.61628 -22.47040 -21.92620 -21.31671 -20.94387 -19.99565 -18.45846 -17.88677 -17.65490 -17.16811 -17.01072 -16.67583 -16.34892 -16.29088 -15.89047 -15.70829 -15.51591 -15.07669 -14.98395 -14.79055 -14.44366 -14.00548 -13.81532 -13.74642 -13.70592 -13.45800 -13.23846 -13.01230 -12.91797 -12.84523 -12.67865 -12.56391 -12.39025 -12.14815 -12.11642 -11.97841 -11.89173 -11.62507 -11.50788 -11.49949 -11.27916 -11.19118 -11.10244 -10.93767 -10.81037 -10.61549 -10.48173 -10.00283 -8.57306 -7.82402 -5.36723 1.42770 1.47438 1.52932 1.69051 2.24937 2.53123 3.03601 3.26796 3.47302 3.59021 3.73727 3.87541 3.89148 4.01194 4.07161 4.18071 4.27619 4.35992 4.38767 4.39060 4.44522 4.46978 4.51240 4.53014 4.60432 4.62493 4.71109 4.76975 4.79926 4.84512 4.89387 4.90514 4.96237 5.00157 5.06731 5.08352 5.14838 5.22845 5.25745 5.29970 5.37270 5.43497 5.45887 5.48064 5.50356 5.63886 5.71650 5.73835 5.74955 5.87969 5.93631 6.48431 6.65081 7.18912 7.32094 7.89379 8.39387 9.15699 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010169 B = 0.002921 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.781560 B = 9584.826838 C =11510.818086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.031 4.031 3 Si 0.942 3.058 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.052 0.948 9 N -0.593 5.593 10 C 0.144 3.856 11 C 0.121 3.879 12 N -0.716 5.716 13 C 0.500 3.500 14 O -0.589 6.589 15 C -0.122 4.122 16 C -0.105 4.105 17 H 0.078 0.922 18 C -0.141 4.141 19 C 0.037 3.963 20 O -0.405 6.405 21 C 0.060 3.940 22 C 0.176 3.824 23 C -0.103 4.103 24 C -0.112 4.112 25 C -0.109 4.109 26 C -0.115 4.115 27 C -0.106 4.106 28 C -0.115 4.115 29 H 0.251 0.749 30 H 0.083 0.917 31 H 0.034 0.966 32 H 0.027 0.973 33 H 0.040 0.960 34 H 0.412 0.588 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.112 0.888 41 H 0.045 0.955 42 H 0.069 0.931 43 H 0.048 0.952 44 H 0.042 0.958 45 H 0.031 0.969 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.074 0.926 49 H 0.057 0.943 50 H 0.072 0.928 51 H 0.043 0.957 52 H 0.068 0.932 53 H 0.067 0.933 54 H 0.036 0.964 55 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.729 -8.932 -10.068 13.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.228 4.228 3 Si 0.772 3.228 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.378 4.378 8 H 0.070 0.930 9 N -0.313 5.313 10 C 0.017 3.983 11 C -0.006 4.006 12 N -0.368 5.368 13 C 0.288 3.712 14 O -0.470 6.470 15 C -0.162 4.162 16 C -0.124 4.124 17 H 0.096 0.904 18 C -0.178 4.178 19 C -0.039 4.039 20 O -0.325 6.325 21 C -0.016 4.016 22 C 0.071 3.929 23 C -0.142 4.142 24 C -0.150 4.150 25 C -0.146 4.146 26 C -0.153 4.153 27 C -0.144 4.144 28 C -0.153 4.153 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.248 0.752 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.082 0.918 40 H 0.130 0.870 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.092 0.908 49 H 0.076 0.924 50 H 0.091 0.909 51 H 0.062 0.938 52 H 0.087 0.913 53 H 0.085 0.915 54 H 0.054 0.946 55 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.061 -9.212 -10.182 14.068 hybrid contribution 0.388 1.686 0.345 1.764 sum -2.673 -7.526 -9.837 12.671 Atomic orbital electron populations 1.70059 1.06102 1.25669 1.53711 1.25523 0.95627 1.00504 1.01189 0.85661 0.78643 0.81303 0.77225 1.21926 1.21914 1.20064 1.19071 0.94124 0.86701 1.37891 0.93009 1.44075 1.48833 1.02909 1.35494 1.20948 0.90658 1.02385 0.84320 1.21832 0.91972 0.98799 0.87960 1.46031 1.13563 1.70679 1.06499 1.21479 0.89777 0.75479 0.84493 1.90666 1.21665 1.50240 1.84409 1.21797 0.97277 1.06597 0.90499 1.22270 0.98909 0.96514 0.94739 0.90393 1.23222 0.99725 0.99938 0.94950 1.23794 1.00695 0.87536 0.91865 1.88837 1.75747 1.33664 1.34204 1.23067 0.95471 0.92536 0.90554 1.19514 0.94471 0.86742 0.92218 1.21489 0.99656 0.96187 0.96887 1.21315 0.97941 0.95497 1.00217 1.21867 0.93334 1.00849 0.98584 1.21306 0.97998 1.01081 0.94905 1.21242 1.01340 0.95925 0.95903 1.20826 0.97908 0.97190 0.99418 0.94005 0.89973 0.94751 0.95408 0.94168 0.75193 0.86429 0.85899 0.88659 0.88081 0.91847 0.86994 0.93672 0.91300 0.93348 0.93879 0.94966 0.92134 0.92418 0.90767 0.92403 0.90914 0.93829 0.91290 0.91464 0.94557 0.93964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.98 11.32 21.65 0.25 -49.74 16 2 C -0.03 -1.67 4.93 84.86 0.42 -1.25 16 3 Si 0.94 44.11 29.61 68.60 2.03 46.14 16 4 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.25 -12.98 8.54 84.03 0.72 -12.26 16 8 H 0.05 2.80 6.81 -2.91 -0.02 2.78 16 9 N -0.59 -27.80 2.31 -688.47 -1.59 -29.39 16 10 C 0.14 6.30 5.28 86.38 0.46 6.76 16 11 C 0.12 4.87 6.00 86.38 0.52 5.39 16 12 N -0.72 -22.58 5.56 -463.07 -2.57 -25.15 16 13 C 0.50 15.26 7.34 87.66 0.64 15.91 16 14 O -0.59 -23.06 15.07 -3.01 -0.05 -23.10 16 15 C -0.12 -2.38 4.94 29.85 0.15 -2.24 16 16 C -0.11 -2.15 2.67 -9.80 -0.03 -2.18 16 17 H 0.08 1.81 8.02 -2.39 -0.02 1.79 16 18 C -0.14 -1.90 6.71 31.89 0.21 -1.69 16 19 C 0.04 0.59 7.72 72.66 0.56 1.15 16 20 O -0.40 -9.88 11.52 -148.98 -1.72 -11.60 16 21 C 0.06 1.53 6.31 72.36 0.46 1.99 16 22 C 0.18 6.99 2.13 43.14 0.09 7.08 16 23 C -0.10 -3.94 4.65 30.22 0.14 -3.80 16 24 C -0.11 -3.24 5.32 30.16 0.16 -3.08 16 25 C -0.11 -2.65 5.85 31.32 0.18 -2.47 16 26 C -0.12 -2.99 5.32 30.14 0.16 -2.83 16 27 C -0.11 -2.96 5.61 30.20 0.17 -2.79 16 28 C -0.11 -4.21 4.45 28.74 0.13 -4.08 16 29 H 0.25 13.41 8.31 -92.71 -0.77 12.64 16 30 H 0.08 4.07 5.33 -2.38 -0.01 4.05 16 31 H 0.03 1.41 8.02 -2.39 -0.02 1.40 16 32 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.41 10.60 8.47 -92.71 -0.79 9.81 16 35 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.09 1.03 7.87 -2.38 -0.02 1.01 16 38 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.04 1.26 8.14 -2.38 -0.02 1.25 16 42 H 0.07 1.91 7.25 -2.39 -0.02 1.89 16 43 H 0.05 1.85 7.15 -2.39 -0.02 1.83 16 44 H 0.04 1.75 6.96 -2.38 -0.02 1.74 16 45 H 0.03 1.43 8.13 -2.39 -0.02 1.41 16 46 H 0.06 1.68 6.63 -2.38 -0.02 1.66 16 47 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 51 H 0.04 1.30 6.62 -2.39 -0.02 1.28 16 52 H 0.07 1.81 6.97 -2.39 -0.02 1.80 16 53 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 54 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 55 H 0.04 1.72 6.20 -2.38 -0.01 1.70 16 Total: -1.00 -66.06 413.20 1.56 -64.50 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: 0.07 Total: 28.73 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 5.14 Total: -0.39 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -3.92 Total: -104.28 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.76 Total: -34.70 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -66.06 1.56 -64.50 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699685342.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.045 kcal (2) G-P(sol) polarization free energy of solvation -66.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds