Wall clock time and date at job start Tue Mar 31 2020 21:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46913 * 2 1 4 4 C 1.53003 * 109.47107 * 240.00544 * 2 1 3 5 5 C 1.53000 * 109.46846 * 299.99196 * 4 2 1 6 6 C 1.52997 * 109.47603 * 300.00190 * 5 4 2 7 7 C 1.53003 * 109.46843 * 59.99826 * 6 5 4 8 8 C 1.52992 * 109.47268 * 300.00231 * 7 6 5 9 9 H 1.09005 * 109.47260 * 300.00241 * 8 7 6 10 10 C 1.53003 * 109.47268 * 180.02562 * 8 7 6 11 11 C 1.50705 * 109.46979 * 65.00043 * 10 8 7 12 12 O 1.21288 * 119.99783 * 359.97438 * 11 10 8 13 13 N 1.34770 * 119.99943 * 180.02562 * 11 10 8 14 14 C 1.46505 * 119.99806 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46842 * 179.97438 * 14 13 11 16 16 O 1.42898 * 110.88568 * 61.12242 * 15 14 13 17 17 C 1.55162 * 111.00397 * 185.00227 * 15 14 13 18 18 C 1.54318 * 102.93910 * 153.57792 * 17 15 14 19 19 N 1.47019 * 107.27817 * 337.80431 * 18 17 15 20 20 C 1.36931 * 125.65250 * 178.96232 * 19 18 17 21 21 H 1.07997 * 120.00094 * 174.80482 * 20 19 18 22 22 C 1.38811 * 120.00078 * 354.80138 * 20 19 18 23 23 N 1.31621 * 119.99896 * 7.05318 * 22 20 19 24 24 Si 1.86797 * 120.00257 * 187.05572 * 22 20 19 25 25 H 1.48501 * 109.47213 * 94.98914 * 24 22 20 26 26 H 1.48496 * 109.47283 * 214.98558 * 24 22 20 27 27 H 1.48500 * 109.47087 * 334.98672 * 24 22 20 28 28 C 1.47426 * 108.69779 * 358.94525 * 19 18 17 29 29 H 1.08995 * 109.47106 * 299.99180 * 1 2 3 30 30 H 1.08993 * 109.47439 * 60.00066 * 1 2 3 31 31 H 1.09006 * 109.46463 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46877 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47304 * 300.00208 * 3 2 1 34 34 H 1.08995 * 109.47009 * 60.00191 * 3 2 1 35 35 H 1.09001 * 109.47312 * 59.99668 * 4 2 1 36 36 H 1.09006 * 109.47156 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.46931 * 60.00844 * 5 4 2 38 38 H 1.09005 * 109.46612 * 179.97438 * 5 4 2 39 39 H 1.09003 * 109.47004 * 179.97438 * 6 5 4 40 40 H 1.08996 * 109.46730 * 299.99938 * 6 5 4 41 41 H 1.09001 * 109.46981 * 179.97438 * 7 6 5 42 42 H 1.09002 * 109.46686 * 60.00521 * 7 6 5 43 43 H 1.09004 * 109.47246 * 184.99563 * 10 8 7 44 44 H 1.08995 * 109.47215 * 305.00011 * 10 8 7 45 45 H 0.97001 * 120.00403 * 359.97438 * 13 11 10 46 46 H 1.08991 * 109.47241 * 300.00173 * 14 13 11 47 47 H 1.09005 * 109.47011 * 60.00208 * 14 13 11 48 48 H 0.96696 * 114.00045 * 300.69939 * 16 15 14 49 49 H 1.09002 * 110.71882 * 271.94323 * 17 15 14 50 50 H 1.08996 * 110.71745 * 35.03268 * 17 15 14 51 51 H 1.09002 * 109.88303 * 97.23111 * 18 17 15 52 52 H 1.09002 * 109.87921 * 218.38625 * 18 17 15 53 53 H 0.97003 * 120.00326 * 180.02562 * 23 22 20 54 54 H 1.08998 * 110.36702 * 265.28652 * 28 19 18 55 55 H 1.09006 * 110.36545 * 142.96685 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0402 -2.8850 -0.0002 7 6 1.5302 -2.1638 1.2491 8 6 2.0401 -0.7213 1.2492 9 1 3.1301 -0.7212 1.2491 10 6 1.5306 -0.0002 2.4988 11 6 2.1321 -0.6357 3.7257 12 8 2.8930 -1.5734 3.6119 13 7 1.8237 -0.1628 4.9495 14 6 2.4081 -0.7810 6.1423 15 6 1.8987 -0.0599 7.3919 16 8 0.4773 -0.1638 7.4962 17 6 2.5914 -0.6040 8.6692 18 6 2.5179 0.5940 9.6392 19 7 2.3552 1.8066 8.8239 20 6 2.2297 3.0819 9.3064 21 1 2.1987 3.9173 8.6227 22 6 2.1423 3.3009 10.6743 23 7 2.3187 2.3022 11.5133 24 14 1.7741 5.0129 11.3245 25 1 0.3153 5.1469 11.5679 26 1 2.5098 5.2284 12.5962 27 1 2.2043 6.0246 10.3262 28 6 2.3500 1.4220 7.4007 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0278 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 -0.2073 -2.1393 36 1 3.1301 -0.7208 -1.2496 37 1 0.4401 -2.1638 -1.2494 38 1 1.8931 -2.6773 -2.1396 39 1 1.6765 -3.9126 0.0000 40 1 3.1302 -2.8849 -0.0003 41 1 1.8932 -2.6779 2.1391 42 1 0.4402 -2.1639 1.2491 43 1 1.8189 1.0501 2.4552 44 1 0.4443 -0.0772 2.5452 45 1 1.2149 0.5868 5.0406 46 1 2.1198 -1.8312 6.1855 47 1 3.4944 -0.7040 6.0963 48 1 -0.0006 0.2082 6.7425 49 1 2.0457 -1.4585 9.0696 50 1 3.6271 -0.8727 8.4615 51 1 1.6640 0.4787 10.3067 52 1 3.4385 0.6582 10.2193 53 1 2.2572 2.4552 12.4692 54 1 3.3505 1.5163 6.9786 55 1 1.6430 2.0372 6.8440 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699908182.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:15 Heat of formation + Delta-G solvation = -111.280235 kcal Electronic energy + Delta-G solvation = -30946.061891 eV Core-core repulsion = 26981.418733 eV Total energy + Delta-G solvation = -3964.643159 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.50442 -40.49219 -39.46745 -36.76363 -35.25308 -34.33190 -34.00488 -33.21455 -31.43537 -30.05198 -28.70109 -28.10055 -27.38482 -26.53935 -25.11276 -23.10380 -22.27040 -21.81387 -21.41177 -21.08112 -19.03615 -18.91574 -18.54766 -17.50272 -16.75485 -16.71629 -16.61997 -16.15482 -15.84032 -15.75297 -15.43912 -15.28724 -15.13493 -14.83297 -14.65046 -14.29073 -13.93246 -13.91738 -13.81933 -13.58530 -13.31964 -13.23950 -12.92308 -12.78424 -12.76569 -12.67521 -12.44588 -12.34878 -12.23732 -12.08975 -12.06977 -12.00129 -11.86149 -11.81730 -11.68339 -11.55409 -11.07776 -10.95795 -10.92297 -10.72439 -10.66807 -10.47561 -10.06820 -8.89009 -7.86277 -5.20488 1.45790 1.48120 1.56673 1.71876 2.18993 2.49006 3.17917 3.32689 3.49582 3.62714 3.68545 3.76511 3.81377 3.93575 3.98190 4.05051 4.19982 4.26529 4.40552 4.47898 4.49266 4.52899 4.57032 4.59690 4.67184 4.69407 4.74381 4.82344 4.85027 4.89921 4.93051 4.93701 4.97000 5.05865 5.08610 5.11493 5.16253 5.24598 5.27246 5.29752 5.33704 5.37256 5.40956 5.44408 5.48867 5.59920 5.63036 5.65183 5.75470 5.77381 6.18518 6.54986 6.83630 7.08676 7.30429 7.76446 8.41096 9.25094 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020938 B = 0.002238 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.984330 B =12507.508807 C =13357.756187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.055 4.055 3 C -0.147 4.147 4 C -0.107 4.107 5 C -0.118 4.118 6 C -0.117 4.117 7 C -0.119 4.119 8 C -0.053 4.053 9 H 0.053 0.947 10 C -0.136 4.136 11 C 0.511 3.489 12 O -0.576 6.576 13 N -0.721 5.721 14 C 0.121 3.879 15 C 0.123 3.877 16 O -0.553 6.553 17 C -0.122 4.122 18 C 0.189 3.811 19 N -0.621 5.621 20 C -0.241 4.241 21 H 0.086 0.914 22 C -0.068 4.068 23 N -0.951 5.951 24 Si 0.978 3.022 25 H -0.288 1.288 26 H -0.297 1.297 27 H -0.264 1.264 28 C 0.114 3.886 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.410 0.590 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.383 0.617 49 H 0.081 0.919 50 H 0.092 0.908 51 H 0.009 0.991 52 H 0.006 0.994 53 H 0.246 0.754 54 H 0.032 0.968 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.608 -6.231 -27.701 28.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.055 4.055 3 C -0.204 4.204 4 C -0.145 4.145 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.156 4.156 8 C -0.072 4.072 9 H 0.071 0.929 10 C -0.175 4.175 11 C 0.299 3.701 12 O -0.455 6.455 13 N -0.374 5.374 14 C -0.004 4.004 15 C 0.081 3.919 16 O -0.360 6.360 17 C -0.161 4.161 18 C 0.064 3.936 19 N -0.347 5.347 20 C -0.370 4.370 21 H 0.104 0.896 22 C -0.261 4.261 23 N -0.600 5.600 24 Si 0.807 3.193 25 H -0.215 1.215 26 H -0.224 1.224 27 H -0.189 1.189 28 C -0.012 4.012 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.247 0.753 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.232 0.768 49 H 0.099 0.901 50 H 0.111 0.889 51 H 0.028 0.972 52 H 0.024 0.976 53 H 0.055 0.945 54 H 0.049 0.951 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.917 -7.065 -27.028 28.209 hybrid contribution -0.168 1.275 0.743 1.485 sum -4.085 -5.790 -26.285 27.223 Atomic orbital electron populations 1.22037 0.93765 1.02249 1.02366 1.20500 0.96329 0.94899 0.93804 1.21973 1.00708 0.95219 1.02527 1.21581 1.00079 0.95456 0.97343 1.21569 1.01246 0.95537 0.97153 1.21482 1.00036 0.98917 0.95019 1.21687 1.00508 0.95416 0.98022 1.20816 0.99397 0.94439 0.92534 0.92877 1.21956 1.03182 1.01813 0.90586 1.21320 0.80645 0.82906 0.85213 1.90667 1.37718 1.30093 1.87061 1.45944 1.49432 1.36705 1.05349 1.21648 0.98529 0.97250 0.83013 1.22375 0.81446 0.94235 0.93847 1.86613 1.16944 1.83656 1.48740 1.22787 1.00485 0.98391 0.94405 1.20830 0.97272 0.84037 0.91477 1.44640 1.85783 1.02998 1.01316 1.19458 1.42352 0.84010 0.91214 0.89600 1.25709 1.02520 1.01509 0.96380 1.70207 1.56652 1.31712 1.01414 0.85058 0.77387 0.79384 0.77501 1.21489 1.22396 1.18885 1.22344 0.98519 0.94060 0.86243 0.91773 0.92167 0.92115 0.93395 0.91904 0.91637 0.91080 0.92941 0.91075 0.91876 0.92258 0.93441 0.92874 0.91386 0.86847 0.86506 0.75305 0.90937 0.91076 0.76797 0.90080 0.88910 0.97226 0.97568 0.94464 0.95067 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 7.43 71.98 0.53 -0.90 16 2 C -0.06 -0.66 0.54 -52.18 -0.03 -0.69 16 3 C -0.15 -1.63 8.13 71.98 0.59 -1.05 16 4 C -0.11 -1.31 4.73 30.60 0.14 -1.17 16 5 C -0.12 -1.47 5.65 30.59 0.17 -1.30 16 6 C -0.12 -1.90 5.92 30.59 0.18 -1.72 16 7 C -0.12 -2.13 4.67 30.59 0.14 -1.99 16 8 C -0.05 -0.85 1.14 -10.80 -0.01 -0.87 16 9 H 0.05 1.13 7.95 -2.38 -0.02 1.11 16 10 C -0.14 -1.95 4.46 29.85 0.13 -1.82 16 11 C 0.51 11.21 7.55 87.66 0.66 11.87 16 12 O -0.58 -17.32 13.96 -3.06 -0.04 -17.36 16 13 N -0.72 -14.77 5.18 -463.04 -2.40 -17.16 16 14 C 0.12 3.15 4.88 86.38 0.42 3.57 16 15 C 0.12 3.92 0.95 -9.40 -0.01 3.91 16 16 O -0.55 -17.67 13.19 -148.98 -1.96 -19.64 16 17 C -0.12 -4.54 6.16 31.78 0.20 -4.34 16 18 C 0.19 9.55 5.38 86.73 0.47 10.02 16 19 N -0.62 -31.53 3.39 -692.01 -2.35 -33.88 16 20 C -0.24 -13.41 10.27 84.03 0.86 -12.54 16 21 H 0.09 4.48 7.84 -2.91 -0.02 4.46 16 22 C -0.07 -3.90 5.48 84.86 0.46 -3.44 16 23 N -0.95 -58.19 10.36 21.65 0.22 -57.96 16 24 Si 0.98 45.72 29.56 68.60 2.03 47.75 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 26 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 27 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 28 C 0.11 4.27 5.98 86.85 0.52 4.78 16 29 H 0.06 0.54 6.55 -2.39 -0.02 0.52 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.63 4.81 -2.38 -0.01 0.61 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.64 6.32 -2.39 -0.02 0.63 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.07 0.80 6.43 -2.39 -0.02 0.78 16 38 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.05 1.28 5.95 -2.39 -0.01 1.27 16 42 H 0.07 1.05 6.43 -2.39 -0.02 1.04 16 43 H 0.11 1.28 6.18 -2.39 -0.01 1.27 16 44 H 0.12 1.19 6.71 -2.39 -0.02 1.18 16 45 H 0.41 6.39 7.31 -92.71 -0.68 5.71 16 46 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.07 1.98 8.13 -2.38 -0.02 1.96 16 48 H 0.38 8.57 8.07 -74.06 -0.60 7.97 16 49 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 50 H 0.09 3.06 8.03 -2.39 -0.02 3.04 16 51 H 0.01 0.55 7.30 -2.39 -0.02 0.53 16 52 H 0.01 0.35 7.61 -2.39 -0.02 0.33 16 53 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 54 H 0.03 1.17 8.04 -2.39 -0.02 1.15 16 55 H 0.06 1.92 8.02 -2.38 -0.02 1.90 16 Total: -1.00 -73.49 403.67 0.54 -72.95 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: -0.39 Total: 22.98 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 5.44 Total: 2.33 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -4.52 Total: -109.00 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -2.01 Total: -37.00 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -73.49 0.54 -72.95 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699908182.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.335 kcal (2) G-P(sol) polarization free energy of solvation -73.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds