Wall clock time and date at job start Tue Mar 31 2020 21:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.53002 * 109.46963 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47092 * 60.00194 * 5 4 2 7 7 C 1.53006 * 109.47445 * 300.00075 * 6 5 4 8 8 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 9 9 H 1.09002 * 109.47398 * 59.99826 * 8 2 1 10 10 C 1.52997 * 109.47060 * 299.99657 * 8 2 1 11 11 C 1.50698 * 109.47721 * 175.00208 * 10 8 2 12 12 O 1.21287 * 119.99375 * 359.97438 * 11 10 8 13 13 N 1.34768 * 120.00550 * 180.02562 * 11 10 8 14 14 C 1.46504 * 119.99870 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46606 * 179.97438 * 14 13 11 16 16 O 1.42894 * 110.64586 * 300.69720 * 15 14 13 17 17 C 1.55163 * 110.71621 * 177.55723 * 15 14 13 18 18 C 1.54911 * 101.57899 * 206.13583 * 17 15 14 19 19 N 1.47420 * 104.83263 * 37.01268 * 18 17 15 20 20 C 1.36936 * 125.64875 * 155.83892 * 19 18 17 21 21 H 1.08000 * 120.00442 * 180.02562 * 20 19 18 22 22 C 1.38820 * 119.99749 * 0.02562 * 20 19 18 23 23 N 1.31608 * 120.00032 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99675 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46581 * 90.00562 * 24 22 20 26 26 H 1.48496 * 109.46777 * 210.00232 * 24 22 20 27 27 H 1.48500 * 109.47194 * 330.00545 * 24 22 20 28 28 C 1.47316 * 108.73543 * 335.70971 * 19 18 17 29 29 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 30 30 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 31 31 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 34 34 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 35 35 H 1.09000 * 109.47437 * 60.00474 * 4 2 1 36 36 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 37 37 H 1.09002 * 109.47067 * 300.00341 * 5 4 2 38 38 H 1.09000 * 109.47312 * 180.02562 * 5 4 2 39 39 H 1.09001 * 109.47375 * 180.02562 * 6 5 4 40 40 H 1.09002 * 109.47497 * 59.99850 * 6 5 4 41 41 H 1.09002 * 109.46589 * 300.00331 * 7 6 5 42 42 H 1.08996 * 109.47165 * 179.97438 * 7 6 5 43 43 H 1.09000 * 109.47325 * 295.00173 * 10 8 2 44 44 H 1.09008 * 109.47017 * 55.00082 * 10 8 2 45 45 H 0.97005 * 120.00103 * 359.97438 * 13 11 10 46 46 H 1.09000 * 109.47148 * 299.99056 * 14 13 11 47 47 H 1.08998 * 109.47345 * 59.99868 * 14 13 11 48 48 H 0.96703 * 114.00096 * 59.30055 * 16 15 14 49 49 H 1.09000 * 111.00771 * 324.21135 * 17 15 14 50 50 H 1.09002 * 111.00401 * 88.02373 * 17 15 14 51 51 H 1.09000 * 110.36399 * 155.85136 * 18 17 15 52 52 H 1.08999 * 110.36832 * 278.16736 * 18 17 15 53 53 H 0.97000 * 120.00028 * 179.97438 * 23 22 20 54 54 H 1.08996 * 110.06632 * 241.87506 * 28 19 18 55 55 H 1.09004 * 109.84575 * 120.61751 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5699 -0.7208 -1.2497 6 6 4.0805 -1.4417 -0.0005 7 6 3.5706 -0.7205 1.2489 8 6 2.0401 -0.7213 1.2492 9 1 1.6767 -1.7490 1.2492 10 6 1.5301 -0.0002 2.4985 11 6 1.9288 -0.7784 3.7258 12 8 2.5584 -1.8088 3.6124 13 7 1.5849 -0.3300 4.9493 14 6 1.9730 -1.0864 6.1424 15 6 1.4629 -0.3652 7.3917 16 8 2.0049 0.9548 7.4680 17 6 1.8054 -1.1740 8.6708 18 6 0.6927 -0.7061 9.6418 19 7 -0.5063 -0.5558 8.7974 20 6 -1.8027 -0.6186 9.2339 21 1 -2.6151 -0.4957 8.5330 22 6 -2.0728 -0.8403 10.5774 23 7 -1.0828 -0.9897 11.4317 24 14 -3.8413 -0.9267 11.1727 25 1 -4.3197 -2.3308 11.1006 26 1 -3.9146 -0.4503 12.5773 27 1 -4.6954 -0.0680 10.3134 28 6 -0.0797 -0.3237 7.4067 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 1.6766 -0.2074 -2.1393 36 1 1.6766 -1.7490 -1.2493 37 1 3.9329 0.3070 -1.2499 38 1 3.9332 -1.2342 -2.1399 39 1 5.1705 -1.4409 -0.0005 40 1 3.7175 -2.4695 -0.0002 41 1 3.9335 0.3073 1.2486 42 1 3.9339 -1.2344 2.1388 43 1 1.9648 0.9984 2.5444 44 1 0.4437 0.0781 2.4548 45 1 1.0810 0.4939 5.0400 46 1 1.5390 -2.0852 6.0965 47 1 3.0594 -1.1639 6.1861 48 1 1.7875 1.5138 6.7095 49 1 1.7367 -2.2460 8.4853 50 1 2.7923 -0.9076 9.0490 51 1 0.5219 -1.4571 10.4131 52 1 0.9607 0.2489 10.0938 53 1 -1.2715 -1.1442 12.3705 54 1 -0.4275 0.6517 7.0666 55 1 -0.4779 -1.1071 6.7618 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699908186.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:25 Heat of formation + Delta-G solvation = -109.899101 kcal Electronic energy + Delta-G solvation = -30935.002572 eV Core-core repulsion = 26970.419303 eV Total energy + Delta-G solvation = -3964.583268 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.52419 -40.52504 -39.47856 -36.82442 -35.27730 -34.33799 -33.99336 -33.22136 -31.40755 -30.06341 -28.70320 -28.10503 -27.41203 -26.54974 -25.10050 -23.11218 -22.31579 -21.83330 -21.36423 -21.12968 -19.04405 -18.93917 -18.64097 -17.52866 -16.79809 -16.73880 -16.64380 -16.15053 -15.77695 -15.70426 -15.43702 -15.32430 -15.03116 -14.88043 -14.55966 -14.46282 -13.99835 -13.88094 -13.84056 -13.61066 -13.32343 -13.29497 -12.95011 -12.77791 -12.76244 -12.67991 -12.46355 -12.36617 -12.23843 -12.08352 -12.07266 -12.03902 -11.86925 -11.77316 -11.60142 -11.55989 -11.09119 -10.96646 -10.93696 -10.75223 -10.72941 -10.48675 -10.09365 -8.91942 -7.78603 -5.23670 1.46412 1.48534 1.57010 1.70224 2.16847 2.48165 3.15005 3.31404 3.44048 3.65713 3.69747 3.75815 3.80417 3.91857 3.95300 4.04175 4.19200 4.25896 4.39856 4.47319 4.49377 4.52336 4.56892 4.59299 4.66575 4.69591 4.73613 4.79883 4.84178 4.89046 4.92839 4.94278 4.97887 5.05321 5.08264 5.10888 5.15855 5.24021 5.26406 5.29366 5.33162 5.36538 5.40192 5.45008 5.48260 5.59177 5.59761 5.64499 5.76855 5.78315 6.27825 6.53059 6.79175 7.08204 7.28938 7.75203 8.39099 9.23528 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020359 B = 0.002232 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.951367 B =12542.876092 C =13295.444342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.055 4.055 3 C -0.147 4.147 4 C -0.107 4.107 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.119 4.119 8 C -0.053 4.053 9 H 0.051 0.949 10 C -0.135 4.135 11 C 0.510 3.490 12 O -0.576 6.576 13 N -0.721 5.721 14 C 0.121 3.879 15 C 0.127 3.873 16 O -0.553 6.553 17 C -0.122 4.122 18 C 0.160 3.840 19 N -0.624 5.624 20 C -0.239 4.239 21 H 0.083 0.917 22 C -0.069 4.069 23 N -0.950 5.950 24 Si 0.982 3.018 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.269 1.269 28 C 0.113 3.887 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.119 0.881 44 H 0.113 0.887 45 H 0.411 0.589 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.385 0.615 49 H 0.084 0.916 50 H 0.085 0.915 51 H 0.075 0.925 52 H -0.015 1.015 53 H 0.247 0.753 54 H 0.037 0.963 55 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.971 5.254 -26.910 28.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.055 4.055 3 C -0.204 4.204 4 C -0.145 4.145 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.156 4.156 8 C -0.072 4.072 9 H 0.070 0.930 10 C -0.175 4.175 11 C 0.299 3.701 12 O -0.456 6.456 13 N -0.374 5.374 14 C -0.004 4.004 15 C 0.085 3.915 16 O -0.361 6.361 17 C -0.160 4.160 18 C 0.035 3.965 19 N -0.350 5.350 20 C -0.368 4.368 21 H 0.101 0.899 22 C -0.262 4.262 23 N -0.599 5.599 24 Si 0.810 3.190 25 H -0.212 1.212 26 H -0.221 1.221 27 H -0.193 1.193 28 C -0.012 4.012 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.137 0.863 44 H 0.131 0.869 45 H 0.247 0.753 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.234 0.766 49 H 0.103 0.897 50 H 0.103 0.897 51 H 0.092 0.908 52 H 0.003 0.997 53 H 0.057 0.943 54 H 0.055 0.945 55 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.524 4.282 -26.253 27.932 hybrid contribution -1.296 0.205 0.545 1.421 sum 7.228 4.487 -25.708 27.079 Atomic orbital electron populations 1.21974 0.94302 1.01619 1.02547 1.20499 0.95364 0.95898 0.93759 1.22035 1.01495 0.94454 1.02403 1.21582 0.95511 1.00024 0.97362 1.21568 0.95718 1.01067 0.97124 1.21485 1.00007 0.98939 0.95047 1.21697 0.95157 1.00763 0.97999 1.20831 0.95478 0.98360 0.92573 0.93010 1.21956 1.04341 1.00679 0.90492 1.21353 0.78124 0.85427 0.85238 1.90669 1.41466 1.26377 1.87062 1.45932 1.57974 1.28174 1.05346 1.21678 1.00335 0.95323 0.83109 1.22187 0.91464 0.83516 0.94325 1.86604 1.76968 1.23463 1.49043 1.22900 0.99825 0.98989 0.94324 1.21642 0.83947 0.97608 0.93278 1.44783 1.02172 1.84446 1.03584 1.19463 0.83286 1.41271 0.92813 0.89883 1.25678 1.01749 1.02557 0.96169 1.70048 1.30587 1.56912 1.02376 0.85026 0.79180 0.77757 0.77038 1.21184 1.22143 1.19333 1.22174 0.93424 0.98532 0.87065 0.91636 0.91840 0.93494 0.92071 0.92134 0.91720 0.91033 0.93023 0.90990 0.91874 0.92218 0.93531 0.91253 0.92936 0.86331 0.86880 0.75278 0.91636 0.90793 0.76600 0.89746 0.89672 0.90750 0.99705 0.94298 0.94500 0.94638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.13 71.98 0.59 -1.09 16 2 C -0.06 -0.67 0.54 -52.18 -0.03 -0.70 16 3 C -0.15 -1.42 7.43 71.98 0.53 -0.88 16 4 C -0.11 -1.34 4.73 30.60 0.14 -1.19 16 5 C -0.12 -1.48 5.65 30.59 0.17 -1.31 16 6 C -0.12 -1.93 5.92 30.60 0.18 -1.75 16 7 C -0.12 -2.15 4.67 30.61 0.14 -2.01 16 8 C -0.05 -0.88 1.14 -10.78 -0.01 -0.90 16 9 H 0.05 1.13 7.95 -2.39 -0.02 1.11 16 10 C -0.14 -1.98 4.45 29.85 0.13 -1.85 16 11 C 0.51 11.52 7.55 87.66 0.66 12.18 16 12 O -0.58 -17.85 13.97 -3.05 -0.04 -17.89 16 13 N -0.72 -15.21 5.17 -463.05 -2.39 -17.60 16 14 C 0.12 3.29 4.73 86.38 0.41 3.70 16 15 C 0.13 4.09 0.92 -9.60 -0.01 4.09 16 16 O -0.55 -16.84 13.09 -148.98 -1.95 -18.79 16 17 C -0.12 -4.62 6.26 31.99 0.20 -4.42 16 18 C 0.16 8.09 5.88 86.86 0.51 8.60 16 19 N -0.62 -31.92 3.40 -691.25 -2.35 -34.27 16 20 C -0.24 -13.34 10.28 84.04 0.86 -12.48 16 21 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 22 C -0.07 -3.92 5.49 84.87 0.47 -3.46 16 23 N -0.95 -57.07 10.09 21.65 0.22 -56.86 16 24 Si 0.98 45.53 29.55 68.60 2.03 47.55 16 25 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 26 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 C 0.11 4.37 6.18 86.67 0.54 4.91 16 29 H 0.06 0.66 6.32 -2.39 -0.02 0.64 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.62 4.81 -2.39 -0.01 0.61 16 33 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.06 0.53 6.54 -2.39 -0.02 0.51 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 36 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.80 6.43 -2.39 -0.02 0.79 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 1.07 6.43 -2.39 -0.02 1.06 16 42 H 0.05 1.28 5.95 -2.39 -0.01 1.27 16 43 H 0.12 1.20 6.71 -2.39 -0.02 1.18 16 44 H 0.11 1.32 6.17 -2.38 -0.01 1.31 16 45 H 0.41 6.44 7.32 -92.70 -0.68 5.76 16 46 H 0.07 1.99 8.12 -2.39 -0.02 1.97 16 47 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.38 7.91 7.93 -74.05 -0.59 7.32 16 49 H 0.08 3.05 8.05 -2.39 -0.02 3.03 16 50 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 51 H 0.07 4.25 5.87 -2.39 -0.01 4.24 16 52 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 53 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 54 H 0.04 1.33 8.07 -2.39 -0.02 1.31 16 55 H 0.04 1.35 7.80 -2.39 -0.02 1.33 16 Total: -1.00 -72.16 402.72 0.62 -71.54 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: -0.38 Total: 24.88 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 5.49 Total: 1.44 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -4.53 Total: -108.73 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -1.99 Total: -36.68 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -72.16 0.62 -71.54 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699908186.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.358 kcal (2) G-P(sol) polarization free energy of solvation -72.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds