Wall clock time and date at job start Tue Mar 31 2020 21:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47353 * 2 1 4 4 C 1.52995 * 109.47041 * 239.99631 * 2 1 3 5 5 C 1.53000 * 109.47760 * 300.00026 * 4 2 1 6 6 C 1.52999 * 109.47215 * 300.00615 * 5 4 2 7 7 C 1.52995 * 109.47259 * 59.99078 * 6 5 4 8 8 C 1.52998 * 109.47348 * 300.00243 * 7 6 5 9 9 H 1.08993 * 109.47543 * 299.99993 * 8 7 6 10 10 C 1.50704 * 109.46914 * 179.97438 * 8 7 6 11 11 O 1.21275 * 120.00144 * 324.38803 * 10 8 7 12 12 N 1.34779 * 119.99592 * 144.39657 * 10 8 7 13 13 C 1.46923 * 120.63352 * 355.83004 * 12 10 8 14 14 C 1.53198 * 108.77504 * 126.37290 * 13 12 10 15 15 C 1.53040 * 109.31269 * 54.63697 * 14 13 12 16 16 C 1.53080 * 109.65652 * 298.70171 * 15 14 13 17 17 C 1.53000 * 109.61781 * 181.17101 * 16 15 14 18 18 O 1.42903 * 109.47234 * 65.10583 * 17 16 15 19 19 N 1.46505 * 109.38749 * 301.27328 * 16 15 14 20 20 C 1.36926 * 120.00209 * 299.75522 * 19 16 15 21 21 H 1.08002 * 120.00208 * 0.02562 * 20 19 16 22 22 C 1.38817 * 120.00300 * 179.97438 * 20 19 16 23 23 N 1.31616 * 120.00325 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99411 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47032 * 89.99918 * 24 22 20 26 26 H 1.48503 * 109.46818 * 209.99388 * 24 22 20 27 27 H 1.48494 * 109.47263 * 329.99892 * 24 22 20 28 28 C 1.46931 * 120.62818 * 175.81400 * 12 10 8 29 29 H 1.08996 * 109.47026 * 300.00438 * 1 2 3 30 30 H 1.09006 * 109.46569 * 60.00370 * 1 2 3 31 31 H 1.09000 * 109.47172 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47059 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.46645 * 299.99807 * 3 2 1 34 34 H 1.08999 * 109.47014 * 59.99486 * 3 2 1 35 35 H 1.09006 * 109.47440 * 60.00532 * 4 2 1 36 36 H 1.09005 * 109.47187 * 180.02562 * 4 2 1 37 37 H 1.09005 * 109.46735 * 59.99766 * 5 4 2 38 38 H 1.08996 * 109.47824 * 180.02562 * 5 4 2 39 39 H 1.09001 * 109.47465 * 179.97438 * 6 5 4 40 40 H 1.09005 * 109.46575 * 299.99249 * 6 5 4 41 41 H 1.09006 * 109.47440 * 180.02562 * 7 6 5 42 42 H 1.09005 * 109.47187 * 60.00546 * 7 6 5 43 43 H 1.09000 * 109.58508 * 246.16121 * 13 12 10 44 44 H 1.09002 * 109.58648 * 6.44337 * 13 12 10 45 45 H 1.08995 * 109.49248 * 174.58789 * 14 13 12 46 46 H 1.08996 * 109.49639 * 294.68425 * 14 13 12 47 47 H 1.09000 * 109.45730 * 58.65470 * 15 14 13 48 48 H 1.08994 * 109.46234 * 178.62927 * 15 14 13 49 49 H 1.09004 * 109.46671 * 185.10121 * 17 16 15 50 50 H 1.08991 * 109.47446 * 305.10074 * 17 16 15 51 51 H 0.96704 * 113.99610 * 179.97438 * 18 17 16 52 52 H 0.96998 * 119.99649 * 119.74972 * 19 16 15 53 53 H 0.97006 * 119.99849 * 180.02562 * 23 22 20 54 54 H 1.08999 * 109.58572 * 353.40807 * 28 12 10 55 55 H 1.08999 * 109.58806 * 113.69585 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5301 -2.1638 -1.2492 6 6 2.0399 -2.8851 0.0001 7 6 1.5300 -2.1638 1.2492 8 6 2.0400 -0.7213 1.2492 9 1 3.1299 -0.7213 1.2493 10 6 1.5371 -0.0107 2.4794 11 8 0.4329 -0.2597 2.9148 12 7 2.3145 0.9017 3.0956 13 6 3.6877 1.1486 2.6351 14 6 3.8568 2.6480 2.3701 15 6 3.4643 3.4312 3.6249 16 6 1.9951 3.1627 3.9610 17 6 1.5957 3.9688 5.1986 18 8 1.6622 5.3647 4.8998 19 7 1.1565 3.5590 2.8269 20 6 1.1615 4.8575 2.3925 21 1 1.7839 5.5896 2.8856 22 6 0.3673 5.2328 1.3176 23 7 0.3716 6.4811 0.9003 24 14 -0.7087 3.9664 0.4643 25 1 -2.0421 3.9294 1.1170 26 1 -0.8676 4.3348 -0.9655 27 1 -0.0719 2.6286 0.5632 28 6 1.8046 1.6687 4.2405 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -0.2075 -2.1393 36 1 3.1300 -0.7217 -1.2490 37 1 0.4400 -2.1638 -1.2492 38 1 1.8937 -2.6778 -2.1389 39 1 1.6763 -3.9126 0.0003 40 1 3.1300 -2.8851 0.0001 41 1 1.8936 -2.6773 2.1393 42 1 0.4399 -2.1637 1.2493 43 1 4.3932 0.8315 3.4031 44 1 3.8712 0.5902 1.7172 45 1 4.8967 2.8582 2.1204 46 1 3.2156 2.9453 1.5403 47 1 4.0893 3.1156 4.4603 48 1 3.6068 4.4971 3.4471 49 1 0.5781 3.7076 5.4894 50 1 2.2777 3.7396 6.0172 51 1 1.4209 5.9374 5.6407 52 1 0.5979 2.9014 2.3838 53 1 -0.1837 6.7434 0.1494 54 1 0.7449 1.4554 4.3804 55 1 2.3549 1.3921 5.1398 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700242688.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:15 Heat of formation + Delta-G solvation = -98.078096 kcal Electronic energy + Delta-G solvation = -34347.917683 eV Core-core repulsion = 30383.847012 eV Total energy + Delta-G solvation = -3964.070671 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.15927 -40.16563 -38.72843 -37.15468 -35.60009 -34.28494 -33.76991 -32.76706 -32.10572 -31.01617 -28.41696 -27.83792 -26.70750 -26.30645 -25.26359 -23.92502 -23.05832 -22.08563 -20.75290 -19.96433 -19.62558 -18.97994 -18.19628 -17.93524 -16.81037 -16.77176 -16.45663 -16.07686 -15.90331 -15.63006 -15.37320 -15.26105 -14.84228 -14.76943 -14.56922 -14.28499 -14.26338 -13.96577 -13.77850 -13.75675 -13.47812 -13.24373 -13.09672 -12.93968 -12.89050 -12.74337 -12.50505 -12.37804 -12.34224 -12.09778 -12.03314 -11.77326 -11.67585 -11.59525 -11.44348 -11.33028 -11.23549 -10.99574 -10.89235 -10.77817 -10.55157 -10.36275 -9.49571 -9.14234 -7.82666 -5.11497 1.33085 1.39933 1.43107 1.65659 2.08623 2.57962 3.39289 3.45576 3.53393 3.62318 3.67896 3.71296 3.92779 4.05350 4.12086 4.16486 4.22159 4.27909 4.33523 4.39551 4.41046 4.46804 4.50648 4.54719 4.57797 4.64792 4.69074 4.71996 4.72830 4.78023 4.84521 4.89625 4.96077 4.99007 5.01923 5.05028 5.06928 5.13984 5.20570 5.26931 5.29606 5.32278 5.39349 5.44696 5.50881 5.58607 5.61925 5.64018 5.73899 6.14230 6.45945 6.51397 7.10759 7.25862 7.32565 8.02528 8.18220 9.38738 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012818 B = 0.005675 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.850843 B = 4932.941770 C = 6062.253139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.043 4.043 3 C -0.163 4.163 4 C -0.102 4.102 5 C -0.122 4.122 6 C -0.109 4.109 7 C -0.103 4.103 8 C -0.091 4.091 9 H 0.117 0.883 10 C 0.517 3.483 11 O -0.583 6.583 12 N -0.601 5.601 13 C 0.106 3.894 14 C -0.136 4.136 15 C -0.109 4.109 16 C 0.182 3.818 17 C 0.072 3.928 18 O -0.563 6.563 19 N -0.730 5.730 20 C -0.153 4.153 21 H 0.092 0.908 22 C -0.074 4.074 23 N -0.993 5.993 24 Si 0.902 3.098 25 H -0.317 1.317 26 H -0.314 1.314 27 H -0.217 1.217 28 C 0.116 3.884 29 H 0.029 0.971 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.057 0.943 47 H 0.079 0.921 48 H 0.040 0.960 49 H 0.027 0.973 50 H 0.068 0.932 51 H 0.372 0.628 52 H 0.355 0.645 53 H 0.244 0.756 54 H 0.066 0.934 55 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.565 -20.536 2.932 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.044 4.044 3 C -0.220 4.220 4 C -0.139 4.139 5 C -0.159 4.159 6 C -0.146 4.146 7 C -0.141 4.141 8 C -0.112 4.112 9 H 0.135 0.865 10 C 0.307 3.693 11 O -0.463 6.463 12 N -0.332 5.332 13 C -0.015 4.015 14 C -0.174 4.174 15 C -0.148 4.148 16 C 0.092 3.908 17 C -0.008 4.008 18 O -0.368 6.368 19 N -0.372 5.372 20 C -0.285 4.285 21 H 0.109 0.891 22 C -0.262 4.262 23 N -0.648 5.648 24 Si 0.735 3.265 25 H -0.247 1.247 26 H -0.243 1.243 27 H -0.141 1.141 28 C -0.007 4.007 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.103 0.897 46 H 0.076 0.924 47 H 0.097 0.903 48 H 0.059 0.941 49 H 0.045 0.955 50 H 0.086 0.914 51 H 0.219 0.781 52 H 0.188 0.812 53 H 0.053 0.947 54 H 0.085 0.915 55 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 11.258 -20.740 2.586 23.740 hybrid contribution -1.974 0.797 -0.182 2.136 sum 9.285 -19.943 2.404 22.129 Atomic orbital electron populations 1.22052 0.96174 1.01861 1.00157 1.20358 0.94700 0.94613 0.94728 1.22445 1.01815 0.95646 1.02143 1.21581 1.01560 0.95583 0.95214 1.21608 1.00656 0.94906 0.98734 1.21499 1.01645 0.98813 0.92642 1.21443 1.00945 0.92296 0.99368 1.21485 1.02799 0.96089 0.90790 0.86494 1.21122 0.84291 0.79227 0.84661 1.90634 1.22266 1.66265 1.67149 1.48094 1.15182 1.37926 1.32021 1.22114 0.81308 0.96384 1.01736 1.21936 1.01943 0.94546 0.98957 1.21726 0.95231 0.99817 0.98016 1.20352 0.91861 0.91596 0.87017 1.22632 0.98700 0.82531 0.96941 1.86903 1.91857 1.16686 1.41361 1.42822 1.51183 1.06995 1.36160 1.19292 1.16782 0.85961 1.06439 0.89063 1.25126 1.03075 0.96723 1.01303 1.69837 1.46577 1.17568 1.30809 0.86309 0.79501 0.83664 0.77014 1.24654 1.24283 1.14083 1.21639 1.00541 0.88989 0.89535 0.95184 0.93906 0.91012 0.90493 0.94588 0.91848 0.92222 0.89817 0.92779 0.90195 0.90680 0.90135 0.91493 0.92735 0.88477 0.88017 0.89695 0.92389 0.90269 0.94078 0.95455 0.91441 0.78120 0.81226 0.94744 0.91519 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.59 6.75 71.98 0.49 -4.11 16 2 C -0.04 -1.12 0.54 -52.18 -0.03 -1.15 16 3 C -0.16 -5.02 5.15 71.98 0.37 -4.65 16 4 C -0.10 -1.96 4.73 30.59 0.14 -1.82 16 5 C -0.12 -1.96 5.65 30.59 0.17 -1.79 16 6 C -0.11 -1.57 5.92 30.59 0.18 -1.39 16 7 C -0.10 -2.10 4.60 30.59 0.14 -1.96 16 8 C -0.09 -2.08 1.43 -11.54 -0.02 -2.10 16 9 H 0.12 2.01 5.71 -2.39 -0.01 2.00 16 10 C 0.52 15.56 5.03 87.66 0.44 16.00 16 11 O -0.58 -22.15 14.31 -3.01 -0.04 -22.19 16 12 N -0.60 -16.31 2.36 -818.89 -1.93 -18.24 16 13 C 0.11 2.19 5.24 86.36 0.45 2.64 16 14 C -0.14 -3.67 5.53 30.67 0.17 -3.50 16 15 C -0.11 -3.32 4.43 30.63 0.14 -3.19 16 16 C 0.18 6.23 0.69 3.69 0.00 6.23 16 17 C 0.07 2.33 6.10 71.98 0.44 2.77 16 18 O -0.56 -21.63 9.92 -148.98 -1.48 -23.11 16 19 N -0.73 -32.66 3.66 -302.93 -1.11 -33.77 16 20 C -0.15 -8.45 8.62 84.04 0.72 -7.73 16 21 H 0.09 5.53 5.52 -2.91 -0.02 5.51 16 22 C -0.07 -4.47 5.50 84.86 0.47 -4.00 16 23 N -0.99 -66.14 13.97 21.65 0.30 -65.84 16 24 Si 0.90 48.21 27.66 68.60 1.90 50.11 16 25 H -0.32 -17.91 7.11 99.48 0.71 -17.21 16 26 H -0.31 -17.48 7.11 99.48 0.71 -16.77 16 27 H -0.22 -10.23 2.67 99.48 0.27 -9.96 16 28 C 0.12 3.40 5.13 86.36 0.44 3.84 16 29 H 0.03 1.15 5.74 -2.39 -0.01 1.14 16 30 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.07 2.02 4.81 -2.39 -0.01 2.01 16 32 H 0.08 1.94 6.46 -2.39 -0.02 1.93 16 33 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.06 2.31 2.70 -2.39 -0.01 2.30 16 35 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.05 1.01 6.43 -2.38 -0.02 1.00 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.05 1.39 6.14 -2.38 -0.01 1.37 16 43 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.10 1.73 4.10 -2.39 -0.01 1.72 16 45 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 46 H 0.06 2.03 4.93 -2.39 -0.01 2.02 16 47 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 48 H 0.04 1.58 6.98 -2.39 -0.02 1.57 16 49 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.37 10.82 9.12 -74.05 -0.68 10.14 16 52 H 0.35 16.68 4.53 -92.71 -0.42 16.26 16 53 H 0.24 15.93 8.31 -92.70 -0.77 15.16 16 54 H 0.07 2.31 7.03 -2.39 -0.02 2.30 16 55 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -79.17 372.29 1.74 -77.43 By element: Atomic # 1 Polarization: 42.14 SS G_CDS: -0.62 Total: 41.52 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 4.72 Total: -5.90 kcal Atomic # 7 Polarization: -115.11 SS G_CDS: -2.74 Total: -117.85 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -1.52 Total: -45.30 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 1.90 Total: 50.11 kcal Total: -79.17 1.74 -77.43 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700242688.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.651 kcal (2) G-P(sol) polarization free energy of solvation -79.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds