Wall clock time and date at job start Tue Mar 31 2020 20:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00110 * 2 1 4 4 H 1.48498 * 109.47699 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47240 * 299.99827 * 3 2 1 6 6 H 1.48505 * 109.47332 * 59.99529 * 3 2 1 7 7 C 1.38813 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00253 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99644 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99767 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47176 * 174.90600 * 10 9 7 12 12 N 1.46503 * 109.53900 * 58.64770 * 11 10 9 13 13 C 1.34779 * 120.00101 * 62.03439 * 12 11 10 14 14 O 1.21280 * 119.99882 * 355.31468 * 13 12 11 15 15 C 1.50701 * 119.99743 * 175.31613 * 13 12 11 16 16 C 1.53006 * 109.47068 * 299.99949 * 15 13 12 17 17 C 1.52994 * 109.46063 * 164.05113 * 16 15 13 18 18 C 1.52980 * 109.50724 * 315.98813 * 17 16 15 19 19 C 1.53002 * 109.47460 * 112.93574 * 18 17 16 20 20 C 1.53006 * 109.43207 * 284.04462 * 19 18 17 21 21 C 1.52986 * 109.48654 * 75.95579 * 20 19 18 22 22 C 1.52990 * 109.50811 * 247.06662 * 21 20 19 23 23 C 1.53178 * 109.54507 * 298.47239 * 11 10 9 24 24 C 1.53094 * 109.15586 * 183.23830 * 23 11 10 25 25 O 1.42907 * 109.48885 * 57.47330 * 24 23 11 26 26 C 1.42900 * 114.09599 * 298.88702 * 25 24 23 27 27 C 1.53090 * 109.41218 * 61.15934 * 26 25 24 28 28 H 0.97000 * 119.99715 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00279 * 359.72941 * 9 7 2 30 30 H 1.08999 * 109.47362 * 294.90913 * 10 9 7 31 31 H 1.09000 * 109.46801 * 54.91311 * 10 9 7 32 32 H 0.96998 * 119.99777 * 242.03630 * 12 11 10 33 33 H 1.09002 * 109.47116 * 60.00052 * 15 13 12 34 34 H 1.09007 * 109.47296 * 284.04658 * 16 15 13 35 35 H 1.09000 * 109.47551 * 44.05412 * 16 15 13 36 36 H 1.08996 * 109.46471 * 195.97477 * 17 16 15 37 37 H 1.08998 * 109.46550 * 75.99708 * 17 16 15 38 38 H 1.08997 * 109.47167 * 352.93222 * 18 17 16 39 39 H 1.09011 * 109.47243 * 232.93459 * 18 17 16 40 40 H 1.08994 * 109.48267 * 164.05394 * 19 18 17 41 41 H 1.09006 * 109.48002 * 44.02984 * 19 18 17 42 42 H 1.08996 * 109.46532 * 315.95256 * 20 19 18 43 43 H 1.08996 * 109.46380 * 195.95955 * 20 19 18 44 44 H 1.08995 * 109.46526 * 127.05313 * 21 20 19 45 45 H 1.09008 * 109.45900 * 7.07515 * 21 20 19 46 46 H 1.09002 * 109.47466 * 284.01904 * 22 21 20 47 47 H 1.09003 * 109.47868 * 164.00583 * 22 21 20 48 48 H 1.09005 * 109.52044 * 303.05548 * 23 11 10 49 49 H 1.09007 * 109.52163 * 63.23895 * 23 11 10 50 50 H 1.09002 * 109.41040 * 297.49346 * 24 23 11 51 51 H 1.09004 * 109.49232 * 177.50652 * 24 23 11 52 52 H 1.08999 * 109.48180 * 301.17296 * 26 25 24 53 53 H 1.09002 * 109.48798 * 181.14332 * 26 25 24 54 54 H 1.09001 * 109.51886 * 182.48342 * 27 26 25 55 55 H 1.09001 * 109.52867 * 62.29738 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6568 0.0016 11 6 1.0689 -4.8168 0.1310 12 7 0.1154 -4.7739 -0.9804 13 6 0.5523 -4.9049 -2.2487 14 8 1.7416 -4.9729 -2.4764 15 6 -0.4370 -4.9667 -3.3838 16 6 -1.3650 -6.1672 -3.1867 17 6 -2.5931 -6.0152 -4.0863 18 6 -3.1069 -4.5762 -4.0105 19 6 -2.9037 -3.8901 -5.3629 20 6 -1.4275 -3.5247 -5.5316 21 6 -0.6255 -4.7833 -5.8682 22 6 0.3150 -5.1153 -4.7081 23 6 0.3139 -4.7008 1.4587 24 6 -0.6141 -5.9082 1.6160 25 8 0.1537 -7.1116 1.5488 26 6 0.8424 -7.2959 0.3104 27 6 1.8306 -6.1454 0.1017 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3881 0.0059 30 1 2.6139 -3.7555 -0.9308 31 1 2.7520 -3.6756 0.8420 32 1 -0.8304 -4.6513 -0.8035 33 1 -1.0271 -4.0504 -3.4019 34 1 -0.8346 -7.0832 -3.4476 35 1 -1.6814 -6.2147 -2.1448 36 1 -3.3745 -6.6979 -3.7526 37 1 -2.3210 -6.2499 -5.1153 38 1 -2.5566 -4.0340 -3.2416 39 1 -4.1682 -4.5820 -3.7618 40 1 -3.5093 -2.9850 -5.4059 41 1 -3.2042 -4.5670 -6.1627 42 1 -1.0522 -3.0920 -4.6043 43 1 -1.3227 -2.8003 -6.3392 44 1 -0.0409 -4.6105 -6.7718 45 1 -1.3090 -5.6166 -6.0317 46 1 1.1645 -4.4325 -4.7222 47 1 0.6710 -6.1405 -4.8108 48 1 1.0271 -4.6813 2.2828 49 1 -0.2752 -3.7837 1.4638 50 1 -1.3535 -5.9037 0.8151 51 1 -1.1214 -5.8540 2.5793 52 1 0.1221 -7.3095 -0.5076 53 1 1.3846 -8.2412 0.3330 54 1 2.3251 -6.2606 -0.8628 55 1 2.5754 -6.1560 0.8974 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700248646.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:27 Heat of formation + Delta-G solvation = -100.048042 kcal Electronic energy + Delta-G solvation = -32980.731071 eV Core-core repulsion = 29016.574977 eV Total energy + Delta-G solvation = -3964.156094 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.98596 -40.44467 -38.92404 -37.20630 -35.48060 -34.19380 -33.65299 -32.91657 -32.20369 -31.97085 -28.38956 -27.86998 -26.79050 -25.43796 -24.66037 -23.44442 -22.97643 -22.24390 -21.56913 -20.37934 -20.00532 -19.28838 -18.53052 -17.17528 -17.03713 -16.86939 -16.61495 -16.31849 -16.20506 -15.71640 -15.39326 -15.17163 -14.99536 -14.99112 -14.82522 -14.78603 -14.20273 -14.11247 -13.91363 -13.63676 -13.54760 -13.23247 -13.10630 -12.84378 -12.83412 -12.73790 -12.53560 -12.30559 -12.22913 -12.10872 -11.99333 -11.96751 -11.92864 -11.65370 -11.60975 -11.35516 -11.27568 -11.02928 -10.89731 -10.62975 -10.51393 -10.31096 -9.85996 -8.96201 -7.97784 -5.23620 1.42434 1.43200 1.52979 1.80803 2.26704 2.52688 2.96016 3.34958 3.54989 3.65135 3.76074 3.80373 3.89004 3.90413 4.00670 4.07955 4.16953 4.22163 4.24684 4.27709 4.30227 4.36486 4.40577 4.45770 4.50252 4.68282 4.75957 4.79064 4.81904 4.83209 4.85643 4.86266 4.99786 5.03248 5.05866 5.07582 5.09618 5.12012 5.17031 5.17163 5.21624 5.26442 5.30368 5.37072 5.44437 5.44878 5.52071 5.64310 5.68390 5.71158 6.24526 6.25000 6.68712 7.32636 7.42288 8.06052 8.35527 9.25104 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007924 B = 0.005116 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3532.703002 B = 5472.131276 C = 7716.831464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.066 4.066 3 Si 0.966 3.034 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.288 1.288 7 C -0.244 4.244 8 H 0.061 0.939 9 N -0.727 5.727 10 C 0.144 3.856 11 C 0.181 3.819 12 N -0.706 5.706 13 C 0.517 3.483 14 O -0.573 6.573 15 C -0.120 4.120 16 C -0.101 4.101 17 C -0.118 4.118 18 C -0.132 4.132 19 C -0.114 4.114 20 C -0.133 4.133 21 C -0.117 4.117 22 C -0.094 4.094 23 C -0.147 4.147 24 C 0.067 3.933 25 O -0.392 6.392 26 C 0.073 3.927 27 C -0.157 4.157 28 H 0.251 0.749 29 H 0.378 0.622 30 H 0.017 0.983 31 H 0.016 0.984 32 H 0.404 0.596 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.093 0.907 46 H 0.036 0.964 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.073 0.927 50 H 0.064 0.936 51 H 0.113 0.887 52 H 0.056 0.944 53 H 0.108 0.892 54 H 0.078 0.922 55 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.283 -17.497 -7.214 21.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.259 4.259 3 Si 0.796 3.204 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.215 1.215 7 C -0.376 4.376 8 H 0.079 0.921 9 N -0.370 5.370 10 C 0.017 3.983 11 C 0.095 3.905 12 N -0.358 5.358 13 C 0.305 3.695 14 O -0.452 6.452 15 C -0.140 4.140 16 C -0.139 4.139 17 C -0.155 4.155 18 C -0.169 4.169 19 C -0.151 4.151 20 C -0.171 4.171 21 C -0.154 4.154 22 C -0.132 4.132 23 C -0.185 4.185 24 C -0.009 4.009 25 O -0.310 6.310 26 C -0.003 4.003 27 C -0.196 4.196 28 H 0.060 0.940 29 H 0.211 0.789 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.240 0.760 33 H 0.132 0.868 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.111 0.889 46 H 0.055 0.945 47 H 0.086 0.914 48 H 0.095 0.905 49 H 0.091 0.909 50 H 0.082 0.918 51 H 0.131 0.869 52 H 0.075 0.925 53 H 0.126 0.874 54 H 0.096 0.904 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.261 -17.598 -7.208 20.734 hybrid contribution 0.357 2.018 0.027 2.050 sum -7.904 -15.580 -7.181 18.888 Atomic orbital electron populations 1.69771 1.06046 1.25834 1.59430 1.25381 0.96451 1.00363 1.03707 0.85179 0.77995 0.80356 0.76865 1.19988 1.22025 1.21491 1.19546 0.91052 0.85730 1.41291 0.92090 1.42236 1.05408 1.00200 1.89148 1.21115 0.94070 0.85621 0.97529 1.20375 0.89502 0.94118 0.86533 1.45920 1.10711 1.73839 1.05323 1.21185 0.89723 0.74236 0.84374 1.90601 1.18999 1.51042 1.84595 1.21918 0.96332 1.03268 0.92525 1.21602 0.95649 0.95665 1.00936 1.21816 0.96423 0.96478 1.00768 1.21846 1.01370 0.96319 0.97387 1.21684 0.94957 1.00597 0.97908 1.21843 0.96369 0.97917 1.00950 1.21831 0.98155 0.98451 0.96938 1.21367 0.97319 1.01578 0.92937 1.22332 1.00330 1.00116 0.95745 1.22654 0.92182 0.82459 1.03642 1.87899 1.65074 1.41021 1.37047 1.22524 0.93858 0.97724 0.86245 1.22450 0.99354 0.94236 1.03541 0.93972 0.78914 0.96464 0.96635 0.75995 0.86797 0.90954 0.91240 0.90343 0.90040 0.92592 0.91125 0.92501 0.90209 0.93413 0.92396 0.91935 0.88874 0.94477 0.91388 0.90509 0.90889 0.91814 0.86941 0.92547 0.87433 0.90393 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.81 13.06 21.65 0.28 -57.52 16 2 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 3 Si 0.97 47.42 29.55 68.60 2.03 49.45 16 4 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 6 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.24 -14.23 9.99 84.03 0.84 -13.39 16 8 H 0.06 3.57 7.83 -2.91 -0.02 3.55 16 9 N -0.73 -37.69 5.16 -343.43 -1.77 -39.46 16 10 C 0.14 6.42 4.98 86.38 0.43 6.85 16 11 C 0.18 5.99 0.32 3.72 0.00 5.99 16 12 N -0.71 -21.27 3.46 -422.38 -1.46 -22.73 16 13 C 0.52 16.89 6.54 87.66 0.57 17.46 16 14 O -0.57 -23.27 11.94 -3.03 -0.04 -23.31 16 15 C -0.12 -3.00 1.93 -11.53 -0.02 -3.02 16 16 C -0.10 -1.76 5.05 30.59 0.15 -1.61 16 17 C -0.12 -1.64 5.48 30.59 0.17 -1.47 16 18 C -0.13 -2.19 5.47 30.59 0.17 -2.03 16 19 C -0.11 -1.94 5.59 30.60 0.17 -1.77 16 20 C -0.13 -2.87 5.47 30.59 0.17 -2.70 16 21 C -0.12 -2.28 5.48 30.59 0.17 -2.11 16 22 C -0.09 -2.37 4.60 30.60 0.14 -2.23 16 23 C -0.15 -4.37 4.76 30.69 0.15 -4.22 16 24 C 0.07 1.52 6.67 72.01 0.48 2.00 16 25 O -0.39 -9.71 10.77 -148.98 -1.60 -11.32 16 26 C 0.07 1.70 6.68 72.01 0.48 2.19 16 27 C -0.16 -4.60 4.74 30.68 0.15 -4.46 16 28 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 29 H 0.38 19.86 6.53 -92.71 -0.61 19.25 16 30 H 0.02 0.88 6.21 -2.39 -0.01 0.86 16 31 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.40 10.50 7.11 -92.71 -0.66 9.84 16 33 H 0.11 3.05 2.83 -2.39 -0.01 3.05 16 34 H 0.07 1.21 7.82 -2.38 -0.02 1.19 16 35 H 0.07 1.13 7.30 -2.39 -0.02 1.12 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 1.04 4.69 -2.39 -0.01 1.02 16 38 H 0.06 1.16 5.47 -2.39 -0.01 1.14 16 39 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.08 7.47 -2.38 -0.02 1.07 16 42 H 0.05 1.30 5.47 -2.39 -0.01 1.29 16 43 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 45 H 0.09 1.41 4.69 -2.38 -0.01 1.40 16 46 H 0.04 1.20 7.52 -2.39 -0.02 1.18 16 47 H 0.07 1.61 7.82 -2.39 -0.02 1.59 16 48 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 49 H 0.07 2.45 7.16 -2.38 -0.02 2.43 16 50 H 0.06 1.24 7.15 -2.39 -0.02 1.22 16 51 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 52 H 0.06 1.23 7.75 -2.39 -0.02 1.21 16 53 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 54 H 0.08 2.58 6.13 -2.39 -0.01 2.57 16 55 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -70.17 391.17 1.76 -68.41 By element: Atomic # 1 Polarization: 44.76 SS G_CDS: -0.36 Total: 44.40 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 4.68 Total: -7.92 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -2.95 Total: -119.72 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -1.64 Total: -34.62 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -70.17 1.76 -68.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700248646.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.639 kcal (2) G-P(sol) polarization free energy of solvation -70.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds