Wall clock time and date at job start Tue Mar 31 2020 21:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00415 * 2 1 4 4 O 1.21277 * 120.00311 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.99462 * 359.97438 * 3 2 1 6 6 C 1.53004 * 109.46770 * 179.97438 * 5 3 2 7 7 H 1.09003 * 109.48230 * 304.97622 * 6 5 3 8 8 C 1.53280 * 109.46438 * 184.99156 * 6 5 3 9 9 C 1.53179 * 109.06328 * 182.44249 * 8 6 5 10 10 C 1.53177 * 109.10692 * 56.94222 * 9 8 6 11 11 C 1.52996 * 109.52263 * 62.88303 * 10 9 8 12 12 C 1.52999 * 109.52342 * 183.00622 * 10 9 8 13 13 C 1.53091 * 109.16264 * 302.97408 * 10 9 8 14 14 O 1.42901 * 109.47881 * 65.00294 * 6 5 3 15 15 C 1.46504 * 120.00039 * 180.02562 * 2 1 3 16 16 H 1.08997 * 109.47033 * 180.02562 * 15 2 1 17 17 C 1.53001 * 109.46867 * 300.00019 * 15 2 1 18 18 N 1.46505 * 109.47007 * 304.99941 * 17 15 2 19 19 C 1.36940 * 120.00343 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99297 * 359.97438 * 19 18 17 21 21 C 1.38808 * 120.00147 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99664 * 179.97438 * 21 19 18 23 23 Si 1.86791 * 120.00146 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47096 * 90.00309 * 23 21 19 25 25 H 1.48506 * 109.47418 * 210.00106 * 23 21 19 26 26 H 1.48497 * 109.47463 * 330.00552 * 23 21 19 27 27 C 1.52999 * 109.47469 * 59.99669 * 15 2 1 28 28 C 1.52998 * 117.49944 * 248.75147 * 27 15 2 29 29 C 1.52991 * 117.50123 * 180.08777 * 27 15 2 30 30 H 1.09000 * 109.46870 * 90.00000 * 1 2 3 31 31 H 1.08999 * 109.47038 * 209.99917 * 1 2 3 32 32 H 1.08996 * 109.46978 * 330.00227 * 1 2 3 33 33 H 1.09005 * 109.47096 * 60.00434 * 5 3 2 34 34 H 1.08998 * 109.47141 * 299.99837 * 5 3 2 35 35 H 1.09006 * 109.64318 * 62.52729 * 8 6 5 36 36 H 1.09002 * 109.50809 * 302.28046 * 8 6 5 37 37 H 1.09002 * 109.54484 * 297.03018 * 9 8 6 38 38 H 1.08999 * 109.54222 * 176.85184 * 9 8 6 39 39 H 1.09000 * 109.47314 * 59.99673 * 11 10 9 40 40 H 1.09000 * 109.47001 * 179.97438 * 11 10 9 41 41 H 1.09000 * 109.47281 * 299.99442 * 11 10 9 42 42 H 1.09000 * 109.46858 * 59.99888 * 12 10 9 43 43 H 1.09001 * 109.47551 * 179.97438 * 12 10 9 44 44 H 1.08998 * 109.47094 * 300.00339 * 12 10 9 45 45 H 1.09000 * 109.47857 * 177.59315 * 13 10 9 46 46 H 1.09000 * 109.48061 * 297.62689 * 13 10 9 47 47 H 1.09002 * 109.47307 * 64.99726 * 17 15 2 48 48 H 1.08998 * 109.47229 * 185.00411 * 17 15 2 49 49 H 0.97005 * 119.99992 * 359.97438 * 18 17 15 50 50 H 0.97006 * 119.99812 * 179.97438 * 22 21 19 51 51 H 1.09004 * 115.54477 * 34.41858 * 27 15 2 52 52 H 1.08996 * 117.49946 * 359.97438 * 28 27 15 53 53 H 1.08999 * 117.49673 * 145.01812 * 28 27 15 54 54 H 1.08997 * 117.50025 * 214.97878 * 29 27 15 55 55 H 1.09000 * 117.49975 * 0.02562 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3797 3.6352 0.0002 7 1 3.0631 3.5287 0.8427 8 6 1.6173 4.9590 0.1253 9 6 2.6157 6.1191 0.0638 10 6 3.4119 6.0267 -1.2416 11 6 2.4627 6.1813 -2.4315 12 6 4.4635 7.1373 -1.2788 13 6 4.1036 4.6628 -1.3127 14 8 3.1230 3.6274 -1.2203 15 6 2.1975 -1.2688 -0.0006 16 1 3.2691 -1.0696 0.0000 17 6 1.8279 -2.0716 1.2483 18 7 2.0707 -1.2573 2.4418 19 6 1.8113 -1.7700 3.6849 20 1 1.4273 -2.7744 3.7853 21 6 2.0408 -0.9983 4.8156 22 7 1.7910 -1.4909 6.0104 23 14 2.7043 0.7392 4.6418 24 1 1.5714 1.6922 4.5253 25 1 3.5173 1.0805 5.8367 26 1 3.5514 0.8262 3.4253 27 6 1.8279 -2.0706 -1.2501 28 6 1.0115 -3.3494 -1.0530 29 6 2.4913 -3.4368 -1.4347 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 0.7585 2.5302 0.8892 34 1 0.7591 2.5298 -0.8908 35 1 1.0849 4.9868 1.0761 36 1 0.9048 5.0477 -0.6948 37 1 3.2977 6.0587 0.9119 38 1 2.0768 7.0660 0.0959 39 1 1.9664 7.1503 -2.3769 40 1 3.0301 6.1158 -3.3598 41 1 1.7152 5.3883 -2.4055 42 1 5.1406 7.0251 -0.4320 43 1 5.0299 7.0706 -2.2077 44 1 3.9696 8.1074 -1.2229 45 1 4.6370 4.5748 -2.2592 46 1 4.8095 4.5698 -0.4874 47 1 0.7741 -2.3469 1.2046 48 1 2.4376 -2.9739 1.2939 49 1 2.4159 -0.3553 2.3516 50 1 1.9518 -0.9518 6.8006 51 1 1.6317 -1.4812 -2.1458 52 1 0.7381 -3.6198 -0.0331 53 1 0.2785 -3.6017 -1.8192 54 1 2.7312 -3.7465 -2.4518 55 1 3.1908 -3.7646 -0.6657 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700728390.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:04 Heat of formation + Delta-G solvation = -69.986144 kcal Electronic energy + Delta-G solvation = -31808.723010 eV Core-core repulsion = 27845.870498 eV Total energy + Delta-G solvation = -3962.852513 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -41.50581 -40.67622 -38.99863 -36.54940 -36.26907 -35.80094 -34.20863 -33.43246 -31.12868 -29.65437 -28.17918 -27.73980 -27.03143 -26.14089 -24.99443 -23.85687 -23.08947 -22.71506 -21.12481 -20.21226 -19.85125 -19.29175 -18.09152 -17.62511 -17.51996 -16.80322 -16.62535 -16.35470 -16.15035 -15.95288 -15.47663 -15.38432 -15.13203 -15.05565 -14.76147 -14.47928 -14.34357 -13.79903 -13.69892 -13.57693 -13.47829 -13.22534 -13.06715 -13.06440 -12.95084 -12.84697 -12.80751 -12.76781 -12.45225 -12.34185 -12.22607 -12.06431 -11.97650 -11.88593 -11.80544 -11.38967 -11.36459 -11.15367 -11.07019 -10.94631 -10.63700 -10.24646 -9.57111 -9.34206 -8.09279 -5.40481 1.24014 1.30759 1.38127 1.68588 1.99948 2.39175 2.80255 2.92895 3.22324 3.42508 3.56768 3.64457 3.74602 3.80282 3.87978 3.97468 4.01637 4.09110 4.10789 4.15902 4.18291 4.30834 4.37190 4.40007 4.49842 4.57328 4.59001 4.61697 4.68317 4.76592 4.77384 4.78843 4.83537 4.85021 4.87287 4.92138 4.99831 5.02074 5.03175 5.04838 5.10975 5.12043 5.19345 5.22942 5.28241 5.32557 5.37003 5.52425 5.61371 5.71341 6.15420 6.30237 6.47340 7.00900 7.24152 7.78148 7.96575 9.12329 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010132 B = 0.003914 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.979917 B = 7151.904281 C = 9117.176115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.602 5.602 3 C 0.502 3.498 4 O -0.580 6.580 5 C -0.129 4.129 6 C 0.103 3.897 7 H 0.028 0.972 8 C -0.145 4.145 9 C -0.113 4.113 10 C -0.098 4.098 11 C -0.132 4.132 12 C -0.137 4.137 13 C 0.068 3.932 14 O -0.381 6.381 15 C 0.166 3.834 16 H 0.068 0.932 17 C 0.148 3.852 18 N -0.755 5.755 19 C -0.227 4.227 20 H 0.066 0.934 21 C -0.051 4.051 22 N -0.977 5.977 23 Si 0.936 3.064 24 H -0.265 1.265 25 H -0.293 1.293 26 H -0.280 1.280 27 C -0.160 4.160 28 C -0.168 4.168 29 C -0.174 4.174 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.031 0.969 47 H 0.050 0.950 48 H 0.029 0.971 49 H 0.360 0.640 50 H 0.259 0.741 51 H 0.116 0.884 52 H 0.092 0.908 53 H 0.117 0.883 54 H 0.114 0.886 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 14.614 -21.817 26.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.334 5.334 3 C 0.292 3.708 4 O -0.459 6.459 5 C -0.168 4.168 6 C 0.045 3.955 7 H 0.047 0.953 8 C -0.182 4.182 9 C -0.150 4.150 10 C -0.098 4.098 11 C -0.189 4.189 12 C -0.195 4.195 13 C -0.009 4.009 14 O -0.300 6.300 15 C 0.062 3.938 16 H 0.086 0.914 17 C 0.021 3.979 18 N -0.400 5.400 19 C -0.358 4.358 20 H 0.084 0.916 21 C -0.243 4.243 22 N -0.628 5.628 23 Si 0.765 3.235 24 H -0.190 1.190 25 H -0.219 1.219 26 H -0.207 1.207 27 C -0.179 4.179 28 C -0.205 4.205 29 C -0.211 4.211 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.113 0.887 46 H 0.049 0.951 47 H 0.068 0.932 48 H 0.047 0.953 49 H 0.193 0.807 50 H 0.068 0.932 51 H 0.134 0.866 52 H 0.111 0.889 53 H 0.135 0.865 54 H 0.133 0.867 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.726 14.312 -21.814 26.354 hybrid contribution 0.998 0.729 1.006 1.593 sum -2.728 15.041 -20.808 25.819 Atomic orbital electron populations 1.21975 0.77389 1.04144 1.03144 1.47849 1.08351 1.04748 1.72453 1.21233 0.87896 0.86591 0.75074 1.90672 1.16065 1.87810 1.51385 1.21858 0.98654 0.89396 1.06881 1.21825 0.92217 0.94509 0.86984 0.95348 1.22271 0.98818 0.93096 1.04065 1.21690 0.97788 0.99046 0.96493 1.21184 0.96924 0.95106 0.96598 1.21769 0.98871 1.01991 0.96250 1.21776 0.97899 0.97776 1.02021 1.22695 0.89962 0.86722 1.01491 1.87914 1.51828 1.52510 1.37777 1.20569 0.96374 0.83400 0.93469 0.91381 1.21273 0.98961 0.93027 0.84633 1.42723 1.79758 1.15312 1.02255 1.19055 1.34488 0.98770 0.83494 0.91636 1.25252 1.02665 1.01525 0.94874 1.69840 1.56827 1.38470 0.97640 0.85684 0.78858 0.82479 0.76476 1.18988 1.21910 1.20668 1.22371 1.07304 0.90311 0.97929 1.23208 0.94362 0.99412 1.03471 1.23048 0.96265 0.98395 1.03391 0.89803 0.91171 0.89909 0.86025 0.85213 0.89830 0.89028 0.92911 0.89488 0.91501 0.92614 0.92578 0.93128 0.91871 0.91082 0.88687 0.95094 0.93209 0.95295 0.80737 0.93234 0.86607 0.88944 0.86483 0.86732 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.68 9.61 127.77 1.23 2.91 16 2 N -0.60 -18.49 2.24 -822.59 -1.85 -20.34 16 3 C 0.50 17.14 7.26 87.66 0.64 17.78 16 4 O -0.58 -25.24 14.75 10.79 0.16 -25.08 16 5 C -0.13 -3.17 3.97 29.85 0.12 -3.05 16 6 C 0.10 2.72 2.19 30.69 0.07 2.79 16 7 H 0.03 0.94 7.96 -2.39 -0.02 0.92 16 8 C -0.15 -2.67 5.07 30.75 0.16 -2.52 16 9 C -0.11 -1.94 4.80 30.71 0.15 -1.80 16 10 C -0.10 -1.67 0.77 -52.09 -0.04 -1.71 16 11 C -0.13 -1.95 8.07 71.98 0.58 -1.37 16 12 C -0.14 -1.91 8.49 71.98 0.61 -1.30 16 13 C 0.07 1.60 5.54 72.01 0.40 2.00 16 14 O -0.38 -10.89 9.06 -135.17 -1.22 -12.12 16 15 C 0.17 5.58 2.59 44.99 0.12 5.69 16 16 H 0.07 2.77 6.90 -2.39 -0.02 2.76 16 17 C 0.15 5.77 4.14 86.38 0.36 6.13 16 18 N -0.76 -37.41 5.24 -343.44 -1.80 -39.20 16 19 C -0.23 -13.26 10.47 84.03 0.88 -12.38 16 20 H 0.07 4.09 8.06 -2.91 -0.02 4.07 16 21 C -0.05 -3.09 5.50 84.86 0.47 -2.63 16 22 N -0.98 -63.27 13.97 21.65 0.30 -62.97 16 23 Si 0.94 48.44 27.74 68.60 1.90 50.34 16 24 H -0.26 -12.70 7.11 99.48 0.71 -12.00 16 25 H -0.29 -15.16 7.11 99.48 0.71 -14.46 16 26 H -0.28 -14.75 6.52 99.48 0.65 -14.10 16 27 C -0.16 -3.99 5.48 -10.80 -0.06 -4.05 16 28 C -0.17 -3.60 9.59 30.62 0.29 -3.30 16 29 C -0.17 -3.94 9.94 30.62 0.30 -3.63 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.72 6.53 -2.39 -0.02 1.71 16 32 H 0.08 1.59 6.44 -2.39 -0.02 1.58 16 33 H 0.12 2.61 7.40 -2.38 -0.02 2.59 16 34 H 0.13 2.38 8.11 -2.39 -0.02 2.36 16 35 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.09 1.41 6.63 -2.39 -0.02 1.39 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 41 H 0.06 0.93 6.14 -2.39 -0.01 0.91 16 42 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.05 1.83 5.34 -2.39 -0.01 1.82 16 48 H 0.03 1.18 7.44 -2.39 -0.02 1.16 16 49 H 0.36 18.28 4.93 -92.70 -0.46 17.82 16 50 H 0.26 15.97 8.31 -92.70 -0.77 15.20 16 51 H 0.12 2.66 8.14 -2.38 -0.02 2.64 16 52 H 0.09 2.29 5.80 -2.39 -0.01 2.27 16 53 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 54 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 55 H 0.08 2.14 7.65 -2.39 -0.02 2.13 16 Total: -1.00 -77.68 414.84 4.10 -73.58 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: 0.34 Total: 36.25 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 6.26 Total: -0.45 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: -3.34 Total: -122.51 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -1.07 Total: -37.20 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 1.90 Total: 50.34 kcal Total: -77.68 4.10 -73.58 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700728390.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.590 kcal (2) G-P(sol) polarization free energy of solvation -77.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds