Wall clock time and date at job start Tue Mar 31 2020 21:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34778 * 119.99825 * 2 1 4 4 O 1.21275 * 119.99638 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.00078 * 359.97438 * 3 2 1 6 6 C 1.53000 * 109.46871 * 179.97438 * 5 3 2 7 7 H 1.09000 * 109.49255 * 54.96968 * 6 5 3 8 8 C 1.53091 * 109.47862 * 175.00014 * 6 5 3 9 9 C 1.53176 * 109.21206 * 177.62293 * 8 6 5 10 10 C 1.53174 * 109.04061 * 302.98570 * 9 8 6 11 11 C 1.52994 * 109.52585 * 176.88776 * 10 9 8 12 12 C 1.53008 * 109.52248 * 297.01571 * 10 9 8 13 13 C 1.53097 * 109.16185 * 56.97999 * 10 9 8 14 14 O 1.42902 * 109.41493 * 302.39739 * 13 10 9 15 15 C 1.46499 * 119.99862 * 179.97438 * 2 1 3 16 16 H 1.09000 * 109.46576 * 180.02562 * 15 2 1 17 17 C 1.53004 * 109.46920 * 60.00380 * 15 2 1 18 18 N 1.46506 * 109.46959 * 54.99870 * 17 15 2 19 19 C 1.36935 * 119.99572 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00295 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99727 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00075 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99955 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47111 * 59.99433 * 23 21 19 25 25 H 1.48497 * 109.47124 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47253 * 299.99684 * 23 21 19 27 27 C 1.52993 * 109.47500 * 300.00304 * 15 2 1 28 28 C 1.53006 * 117.49850 * 248.62521 * 27 15 2 29 29 C 1.53001 * 117.50011 * 180.02562 * 27 15 2 30 30 H 1.09001 * 109.46524 * 89.99846 * 1 2 3 31 31 H 1.08997 * 109.47047 * 209.99753 * 1 2 3 32 32 H 1.08999 * 109.47203 * 330.00249 * 1 2 3 33 33 H 1.08997 * 109.46997 * 60.00021 * 5 3 2 34 34 H 1.08998 * 109.46491 * 299.99793 * 5 3 2 35 35 H 1.09002 * 109.52401 * 57.68445 * 8 6 5 36 36 H 1.09004 * 109.52068 * 297.56090 * 8 6 5 37 37 H 1.08995 * 109.54674 * 62.85906 * 9 8 6 38 38 H 1.09007 * 109.53937 * 183.03159 * 9 8 6 39 39 H 1.09004 * 109.46842 * 60.00247 * 11 10 9 40 40 H 1.09000 * 109.46922 * 179.97438 * 11 10 9 41 41 H 1.08996 * 109.47545 * 300.00187 * 11 10 9 42 42 H 1.09006 * 109.46725 * 59.99537 * 12 10 9 43 43 H 1.08998 * 109.47222 * 179.97438 * 12 10 9 44 44 H 1.09001 * 109.46998 * 299.99694 * 12 10 9 45 45 H 1.08997 * 109.47580 * 62.37620 * 13 10 9 46 46 H 1.08996 * 109.48015 * 182.39657 * 13 10 9 47 47 H 1.08998 * 109.46604 * 174.99325 * 17 15 2 48 48 H 1.08995 * 109.46885 * 294.99527 * 17 15 2 49 49 H 0.97002 * 119.99743 * 359.97438 * 18 17 15 50 50 H 0.97001 * 119.99944 * 180.02562 * 22 21 19 51 51 H 1.08998 * 115.55273 * 34.32838 * 27 15 2 52 52 H 1.08992 * 117.49954 * 359.97438 * 28 27 15 53 53 H 1.09003 * 117.49744 * 145.02167 * 28 27 15 54 54 H 1.08998 * 117.49869 * 214.97879 * 29 27 15 55 55 H 1.08992 * 117.49973 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4724 -0.0006 6 6 2.3796 3.6353 0.0002 7 1 3.0649 3.5284 -0.8407 8 6 1.6187 4.9576 -0.1262 9 6 2.6144 6.1200 -0.0651 10 6 3.4078 6.0301 1.2421 11 6 4.4592 7.1409 1.2794 12 6 2.4560 6.1868 2.4298 13 6 4.1008 4.6670 1.3165 14 8 3.1214 3.6305 1.2231 15 6 2.1975 -1.2687 0.0006 16 1 3.2691 -1.0695 0.0009 17 6 1.8279 -2.0715 -1.2484 18 7 2.0708 -1.2572 -2.4419 19 6 1.8104 -1.7696 -3.6848 20 1 1.4264 -2.7740 -3.7853 21 6 2.0410 -0.9983 -4.8156 22 7 2.5094 0.2256 -4.6932 23 14 1.6865 -1.6973 -6.5112 24 1 0.2486 -2.0555 -6.6082 25 1 2.0139 -0.6816 -7.5438 26 1 2.5146 -2.9104 -6.7295 27 6 1.8279 -2.0705 1.2500 28 6 2.9097 -2.2560 2.3161 29 6 2.4933 -3.4357 1.4359 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 0.7584 2.5303 0.8891 34 1 0.7591 2.5298 -0.8909 35 1 0.9043 5.0465 0.6923 36 1 1.0874 4.9826 -1.0777 37 1 3.2982 6.0593 -0.9116 38 1 2.0734 7.0657 -0.1005 39 1 3.9653 8.1108 1.2208 40 1 5.0230 7.0763 2.2101 41 1 5.1381 7.0272 0.4344 42 1 1.7087 5.3937 2.4035 43 1 3.0214 6.1222 3.3594 44 1 1.9598 7.1556 2.3724 45 1 4.8085 4.5736 0.4929 46 1 4.6324 4.5808 2.2642 47 1 2.4378 -2.9738 -1.2939 48 1 0.7742 -2.3469 -1.2046 49 1 2.4153 -0.3550 -2.3515 50 1 2.6702 0.7647 -5.4834 51 1 0.7984 -1.9617 1.5910 52 1 3.8847 -1.8072 2.1270 53 1 2.5918 -2.2691 3.3587 54 1 1.9016 -4.2251 1.8992 55 1 3.1941 -3.7627 0.6679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700728392.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:12 Heat of formation + Delta-G solvation = -76.259244 kcal Electronic energy + Delta-G solvation = -31598.185721 eV Core-core repulsion = 27635.061186 eV Total energy + Delta-G solvation = -3963.124535 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.39704 -40.56940 -38.71846 -36.58155 -36.21400 -35.69078 -34.16641 -33.14660 -30.96623 -29.50729 -28.15036 -27.63792 -26.95554 -26.10701 -25.09620 -23.72704 -22.90351 -22.65973 -21.21163 -20.05533 -19.81831 -19.14025 -18.09752 -17.51235 -17.35433 -16.62652 -16.59057 -16.40828 -15.95279 -15.80157 -15.39569 -15.35920 -15.08718 -14.92258 -14.71233 -14.39190 -14.23209 -13.71340 -13.67683 -13.52687 -13.18827 -13.11234 -13.00065 -12.95594 -12.86634 -12.81720 -12.74823 -12.66558 -12.40727 -12.39735 -12.20504 -12.13865 -11.94276 -11.77343 -11.76260 -11.34291 -11.32665 -11.11006 -10.99075 -10.89015 -10.62707 -10.20436 -9.47889 -9.00388 -7.93476 -5.23712 1.44805 1.48677 1.54763 1.80392 2.09633 2.54723 2.84667 2.91615 3.38841 3.55905 3.65400 3.70764 3.78790 3.83820 3.99075 4.03000 4.07648 4.14597 4.17663 4.18922 4.34109 4.38040 4.42829 4.47778 4.54416 4.56918 4.61765 4.65161 4.73459 4.77315 4.79960 4.81661 4.84180 4.88730 4.90136 4.95766 5.00015 5.03339 5.04787 5.05062 5.10164 5.15021 5.22988 5.27387 5.30765 5.31081 5.39916 5.46578 5.55602 5.73363 6.25859 6.34736 6.55865 7.31920 7.36178 8.08167 8.32691 9.29385 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009435 B = 0.003583 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.080642 B = 7812.002825 C = 9960.238135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.599 5.599 3 C 0.508 3.492 4 O -0.581 6.581 5 C -0.122 4.122 6 C 0.108 3.892 7 H 0.024 0.976 8 C -0.143 4.143 9 C -0.112 4.112 10 C -0.098 4.098 11 C -0.137 4.137 12 C -0.131 4.131 13 C 0.068 3.932 14 O -0.382 6.382 15 C 0.172 3.828 16 H 0.058 0.942 17 C 0.150 3.850 18 N -0.741 5.741 19 C -0.246 4.246 20 H 0.077 0.923 21 C -0.074 4.074 22 N -0.969 5.969 23 Si 0.975 3.025 24 H -0.273 1.273 25 H -0.297 1.297 26 H -0.281 1.281 27 C -0.163 4.163 28 C -0.173 4.173 29 C -0.162 4.162 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.028 0.972 46 H 0.096 0.904 47 H 0.024 0.976 48 H 0.035 0.965 49 H 0.371 0.629 50 H 0.249 0.751 51 H 0.129 0.871 52 H 0.072 0.928 53 H 0.115 0.885 54 H 0.122 0.878 55 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 9.475 18.208 21.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.331 5.331 3 C 0.298 3.702 4 O -0.461 6.461 5 C -0.162 4.162 6 C 0.050 3.950 7 H 0.043 0.957 8 C -0.180 4.180 9 C -0.149 4.149 10 C -0.098 4.098 11 C -0.194 4.194 12 C -0.188 4.188 13 C -0.009 4.009 14 O -0.301 6.301 15 C 0.067 3.933 16 H 0.076 0.924 17 C 0.023 3.977 18 N -0.383 5.383 19 C -0.377 4.377 20 H 0.095 0.905 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.804 3.196 24 H -0.199 1.199 25 H -0.223 1.223 26 H -0.207 1.207 27 C -0.182 4.182 28 C -0.210 4.210 29 C -0.199 4.199 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.146 0.854 34 H 0.133 0.867 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.047 0.953 46 H 0.114 0.886 47 H 0.042 0.958 48 H 0.053 0.947 49 H 0.203 0.797 50 H 0.058 0.942 51 H 0.147 0.853 52 H 0.091 0.909 53 H 0.134 0.866 54 H 0.140 0.860 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.448 9.198 18.233 21.136 hybrid contribution 0.636 0.004 -1.715 1.829 sum -4.813 9.201 16.517 19.510 Atomic orbital electron populations 1.21937 0.77788 1.04839 1.01969 1.47717 1.08055 1.04788 1.72537 1.21116 0.87809 0.86533 0.74744 1.90653 1.16221 1.87795 1.51447 1.21764 0.98535 0.89602 1.06275 1.21729 0.92135 0.94429 0.86696 0.95742 1.22208 0.98817 0.93171 1.03848 1.21681 0.97781 0.98964 0.96492 1.21187 0.96950 0.95086 0.96571 1.21773 0.97882 0.97758 1.02008 1.21765 0.98821 1.01992 0.96218 1.22692 0.90003 0.86779 1.01397 1.87919 1.52010 1.52544 1.37660 1.20578 0.95914 0.83272 0.93510 0.92363 1.21067 0.98115 0.93068 0.85465 1.42497 1.78703 1.15659 1.01457 1.19605 1.35052 0.98214 0.84854 0.90526 1.25587 1.02713 0.96745 1.01618 1.69870 1.52845 1.10247 1.28978 0.85191 0.78245 0.76826 0.79347 1.19870 1.22299 1.20699 1.22460 0.99391 0.99833 0.96563 1.22996 0.98393 1.02607 0.96985 1.22987 1.03281 0.91288 1.02364 0.93896 0.89175 0.88332 0.85429 0.86680 0.89027 0.90181 0.93130 0.89403 0.91008 0.91785 0.93222 0.92645 0.92523 0.91410 0.95333 0.88611 0.95817 0.94689 0.79737 0.94200 0.85340 0.90917 0.86633 0.85982 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.95 9.37 127.77 1.20 3.14 16 2 N -0.60 -20.60 2.24 -822.59 -1.85 -22.44 16 3 C 0.51 19.58 7.26 87.66 0.64 20.22 16 4 O -0.58 -28.07 14.75 10.57 0.16 -27.91 16 5 C -0.12 -3.53 3.97 29.85 0.12 -3.41 16 6 C 0.11 3.28 2.19 30.62 0.07 3.35 16 7 H 0.02 0.94 7.95 -2.39 -0.02 0.92 16 8 C -0.14 -3.11 5.05 30.68 0.15 -2.95 16 9 C -0.11 -2.24 4.81 30.71 0.15 -2.09 16 10 C -0.10 -1.89 0.77 -52.09 -0.04 -1.93 16 11 C -0.14 -2.16 8.49 71.98 0.61 -1.55 16 12 C -0.13 -2.17 8.08 71.98 0.58 -1.58 16 13 C 0.07 1.78 5.54 72.01 0.40 2.18 16 14 O -0.38 -12.11 9.08 -135.39 -1.23 -13.34 16 15 C 0.17 6.29 2.42 44.99 0.11 6.40 16 16 H 0.06 2.61 6.65 -2.39 -0.02 2.60 16 17 C 0.15 6.31 5.32 86.38 0.46 6.77 16 18 N -0.74 -39.89 5.43 -343.44 -1.87 -41.76 16 19 C -0.25 -14.16 9.99 84.03 0.84 -13.32 16 20 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 21 C -0.07 -4.40 5.50 84.86 0.47 -3.94 16 22 N -0.97 -61.71 13.06 21.65 0.28 -61.42 16 23 Si 0.98 47.17 29.55 68.60 2.03 49.20 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 26 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 27 C -0.16 -4.37 5.15 -10.79 -0.06 -4.43 16 28 C -0.17 -4.29 10.17 30.58 0.31 -3.97 16 29 C -0.16 -3.83 9.79 30.58 0.30 -3.53 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.86 6.43 -2.39 -0.02 1.84 16 32 H 0.10 1.80 6.44 -2.39 -0.02 1.78 16 33 H 0.13 2.77 7.40 -2.39 -0.02 2.75 16 34 H 0.12 3.13 8.11 -2.39 -0.02 3.11 16 35 H 0.09 1.66 6.63 -2.39 -0.02 1.65 16 36 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.05 1.02 6.15 -2.38 -0.01 1.01 16 43 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.10 2.26 8.14 -2.39 -0.02 2.25 16 47 H 0.02 1.02 7.47 -2.39 -0.02 1.00 16 48 H 0.04 1.39 7.84 -2.39 -0.02 1.37 16 49 H 0.37 22.07 7.06 -92.71 -0.65 21.42 16 50 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 51 H 0.13 2.84 6.59 -2.39 -0.02 2.82 16 52 H 0.07 2.13 8.05 -2.39 -0.02 2.11 16 53 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 54 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 55 H 0.08 2.22 7.66 -2.39 -0.02 2.20 16 Total: -1.00 -77.69 421.75 4.03 -73.66 By element: Atomic # 1 Polarization: 44.47 SS G_CDS: 0.20 Total: 44.67 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 6.30 Total: -0.66 kcal Atomic # 7 Polarization: -122.19 SS G_CDS: -3.43 Total: -125.62 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -1.07 Total: -41.25 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -77.69 4.03 -73.66 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700728392.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.598 kcal (2) G-P(sol) polarization free energy of solvation -77.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds