Wall clock time and date at job start Tue Mar 31 2020 22:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.24493 * 2 1 4 4 C 1.54834 * 109.35947 * 119.65867 * 2 1 3 5 5 C 1.50129 * 110.81875 * 81.33958 * 4 2 1 6 6 H 1.08999 * 110.24825 * 338.57297 * 5 4 2 7 7 N 1.46497 * 110.25376 * 216.65443 * 5 4 2 8 8 C 1.34775 * 120.00173 * 156.93008 * 7 5 4 9 9 O 1.21279 * 119.99935 * 0.02562 * 8 7 5 10 10 C 1.50701 * 120.00266 * 180.02562 * 8 7 5 11 11 O 1.42889 * 109.47448 * 180.02562 * 10 8 7 12 12 C 1.42894 * 114.00468 * 180.02562 * 11 10 8 13 13 C 1.54893 * 110.48481 * 264.77507 * 12 11 10 14 14 C 1.54891 * 102.74734 * 203.37266 * 13 12 11 15 15 C 1.54269 * 104.19360 * 37.94575 * 14 13 12 16 16 C 1.53877 * 106.59753 * 336.38546 * 15 14 13 17 17 C 1.52529 * 105.53864 * 97.60717 * 5 4 2 18 18 C 1.46072 * 114.37795 * 270.81727 * 17 5 4 19 19 N 1.50164 * 107.62872 * 58.17985 * 18 17 5 20 20 C 1.36937 * 120.53521 * 109.70713 * 19 18 17 21 21 H 1.08003 * 119.99667 * 156.64161 * 20 19 18 22 22 C 1.38812 * 120.00146 * 336.64819 * 20 19 18 23 23 N 1.31617 * 119.99799 * 340.45175 * 22 20 19 24 24 Si 1.86804 * 119.99847 * 160.45025 * 22 20 19 25 25 H 1.48500 * 109.47207 * 60.00328 * 24 22 20 26 26 H 1.48498 * 109.46773 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47201 * 299.99703 * 24 22 20 28 28 C 1.43436 * 118.93018 * 289.69073 * 19 18 17 29 29 H 1.08997 * 109.47322 * 300.33810 * 1 2 3 30 30 H 1.09005 * 109.47544 * 60.34216 * 1 2 3 31 31 H 1.09005 * 109.47278 * 180.34222 * 1 2 3 32 32 H 1.09002 * 109.47067 * 179.65747 * 3 2 1 33 33 H 1.09001 * 109.47306 * 299.65904 * 3 2 1 34 34 H 1.09008 * 109.47040 * 59.65801 * 3 2 1 35 35 H 1.08994 * 109.21408 * 320.99458 * 4 2 1 36 36 H 1.09007 * 109.20819 * 201.68473 * 4 2 1 37 37 H 0.97003 * 119.99765 * 336.93574 * 7 5 4 38 38 H 1.08998 * 109.46695 * 59.99617 * 10 8 7 39 39 H 1.09004 * 109.46525 * 300.00512 * 10 8 7 40 40 H 1.09004 * 110.43361 * 27.45488 * 12 11 10 41 41 H 1.08999 * 110.75230 * 85.06492 * 13 12 11 42 42 H 1.08991 * 110.75624 * 321.68965 * 13 12 11 43 43 H 1.08996 * 110.48917 * 279.26334 * 14 13 12 44 44 H 1.09002 * 110.48272 * 156.61947 * 14 13 12 45 45 H 1.09000 * 110.03691 * 95.67173 * 15 14 13 46 46 H 1.09007 * 110.02973 * 217.05032 * 15 14 13 47 47 H 1.09001 * 110.03118 * 119.29009 * 16 15 14 48 48 H 1.09000 * 110.02639 * 240.71556 * 16 15 14 49 49 H 1.09008 * 108.51860 * 31.91576 * 17 5 4 50 50 H 1.09006 * 108.51935 * 149.42322 * 17 5 4 51 51 H 1.08998 * 109.71272 * 298.68991 * 18 17 5 52 52 H 1.08998 * 109.87676 * 177.76722 * 18 17 5 53 53 H 0.96999 * 119.99777 * 180.02562 * 23 22 20 54 54 H 1.09003 * 108.15453 * 329.85065 * 28 19 18 55 55 H 1.08997 * 108.00165 * 213.16138 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0343 1.4445 0.0000 4 6 2.0433 -0.7228 1.2694 5 6 2.0208 -2.2121 1.0813 6 1 1.3237 -2.4817 0.2879 7 7 1.6452 -2.8757 2.3322 8 6 1.1163 -4.1151 2.3052 9 8 0.9517 -4.6811 1.2453 10 6 0.7294 -4.7975 3.5919 11 8 0.1969 -6.0916 3.3034 12 6 -0.2037 -6.8268 4.4613 13 6 0.9322 -7.7737 4.9220 14 6 0.1689 -8.8611 5.7182 15 6 -1.1353 -9.0685 4.9206 16 6 -1.3721 -7.7749 4.1215 17 6 3.4433 -2.5956 0.6866 18 6 3.7000 -2.5623 -0.7510 19 7 3.4056 -1.1710 -1.2333 20 6 4.4211 -0.3435 -1.6321 21 1 4.2178 0.4733 -2.3089 22 6 5.7117 -0.5543 -1.1665 23 7 5.9105 -1.2694 -0.0796 24 14 7.1662 0.1767 -2.0828 25 1 7.0354 1.6554 -2.1199 26 1 8.4252 -0.1911 -1.3865 27 1 7.1943 -0.3528 -3.4699 28 6 2.0434 -0.7231 -1.2700 29 1 -0.3634 0.5191 0.8869 30 1 -0.3634 0.5085 -0.8931 31 1 -0.3634 -1.0277 0.0061 32 1 3.1243 1.4488 0.0061 33 1 1.6739 1.9552 -0.8930 34 1 1.6639 1.9587 0.8870 35 1 1.4076 -0.4586 2.1144 36 1 3.0646 -0.4028 1.4761 37 1 1.7772 -2.4231 3.1799 38 1 -0.0233 -4.2010 4.1074 39 1 1.6091 -4.9003 4.2273 40 1 -0.4857 -6.1467 5.2652 41 1 1.6369 -7.2470 5.5656 42 1 1.4430 -8.2103 4.0639 43 1 -0.0521 -8.5112 6.7265 44 1 0.7463 -9.7850 5.7521 45 1 -1.0266 -9.9131 4.2402 46 1 -1.9666 -9.2440 5.6034 47 1 -1.3785 -7.9918 3.0533 48 1 -2.3186 -7.3219 4.4166 49 1 4.1351 -1.9091 1.1749 50 1 3.6445 -3.6026 1.0523 51 1 3.0490 -3.2750 -1.2573 52 1 4.7434 -2.8089 -0.9470 53 1 6.8123 -1.4164 0.2460 54 1 1.4059 -1.5888 -1.4492 55 1 1.9350 -0.0434 -2.1152 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707278350.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:03 Heat of formation + Delta-G solvation = -88.431246 kcal Electronic energy + Delta-G solvation = -31284.438520 eV Core-core repulsion = 27320.786168 eV Total energy + Delta-G solvation = -3963.652352 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -41.26114 -40.08605 -39.31223 -36.83726 -36.21427 -35.89711 -33.35159 -32.45034 -29.99304 -29.59995 -28.88656 -28.02977 -27.52119 -27.29061 -25.07133 -23.32413 -21.86898 -21.68086 -21.47734 -21.16788 -19.51534 -18.59143 -18.16901 -18.04617 -17.07829 -16.94790 -16.71290 -16.40269 -15.87644 -15.71022 -15.36775 -15.23408 -15.17199 -14.77253 -14.53030 -14.29401 -14.13165 -13.84173 -13.51323 -13.39097 -13.24283 -13.10140 -13.04457 -12.89298 -12.63575 -12.51926 -12.44787 -12.36767 -12.25485 -12.08388 -11.96987 -11.92355 -11.68173 -11.55629 -11.49439 -11.39845 -11.31773 -11.12713 -11.00018 -10.71490 -10.50811 -10.45637 -9.89549 -8.62140 -7.78375 -5.17869 1.48559 1.52175 1.56901 1.64190 1.89596 2.56635 3.02616 3.34572 3.57122 3.64339 3.70437 3.81657 3.98802 4.04345 4.07850 4.09245 4.19657 4.29148 4.33800 4.45576 4.49029 4.53036 4.55651 4.59150 4.67745 4.75469 4.78785 4.79932 4.89793 4.94777 4.95252 4.98319 5.06796 5.08318 5.12995 5.17663 5.20703 5.22112 5.27720 5.28701 5.32435 5.36270 5.46626 5.47870 5.54546 5.64668 5.69656 5.74702 5.81443 6.07998 6.22400 6.45277 6.66964 7.19862 7.33712 7.93038 8.46326 9.26348 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016815 B = 0.002569 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.782029 B =10894.455376 C =11954.308692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.086 4.086 3 C -0.120 4.120 4 C -0.090 4.090 5 C 0.164 3.836 6 H 0.064 0.936 7 N -0.706 5.706 8 C 0.504 3.496 9 O -0.577 6.577 10 C 0.051 3.949 11 O -0.389 6.389 12 C 0.074 3.926 13 C -0.151 4.151 14 C -0.119 4.119 15 C -0.121 4.121 16 C -0.127 4.127 17 C -0.116 4.116 18 C 0.173 3.827 19 N -0.595 5.595 20 C -0.246 4.246 21 H 0.063 0.937 22 C -0.041 4.041 23 N -0.916 5.916 24 Si 0.953 3.047 25 H -0.279 1.279 26 H -0.297 1.297 27 H -0.289 1.289 28 C 0.162 3.838 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.034 0.966 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.414 0.586 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.083 0.917 47 H 0.054 0.946 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.014 0.986 51 H 0.001 0.999 52 H 0.060 0.940 53 H 0.246 0.754 54 H 0.025 0.975 55 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.606 -6.754 16.188 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.089 4.089 3 C -0.178 4.178 4 C -0.128 4.128 5 C 0.059 3.941 6 H 0.082 0.918 7 N -0.359 5.359 8 C 0.291 3.709 9 O -0.456 6.456 10 C -0.029 4.029 11 O -0.308 6.308 12 C 0.017 3.983 13 C -0.188 4.188 14 C -0.156 4.156 15 C -0.158 4.158 16 C -0.164 4.164 17 C -0.156 4.156 18 C 0.049 3.951 19 N -0.316 5.316 20 C -0.376 4.376 21 H 0.080 0.920 22 C -0.237 4.237 23 N -0.562 5.562 24 Si 0.783 3.217 25 H -0.205 1.205 26 H -0.223 1.223 27 H -0.216 1.216 28 C 0.034 3.966 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.251 0.749 38 H 0.132 0.868 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.072 0.928 48 H 0.100 0.900 49 H 0.100 0.900 50 H 0.033 0.967 51 H 0.019 0.981 52 H 0.078 0.922 53 H 0.055 0.945 54 H 0.043 0.957 55 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -14.582 -7.275 15.297 22.351 hybrid contribution 1.531 0.470 -0.326 1.634 sum -13.051 -6.805 14.972 20.995 Atomic orbital electron populations 1.21760 0.93411 1.01020 1.02270 1.21835 0.95303 0.95763 0.96027 1.21641 1.00369 0.94906 1.00835 1.21614 1.01168 0.92117 0.97932 1.20057 0.95375 0.92928 0.85719 0.91758 1.45957 1.63236 1.16376 1.10371 1.21022 0.76809 0.81587 0.91498 1.90707 1.55299 1.65305 1.34311 1.22341 1.01486 0.85740 0.93310 1.88044 1.82244 1.27774 1.32750 1.23353 0.94642 0.93074 0.87204 1.23012 0.98052 0.97761 1.00023 1.22279 0.95727 0.98526 0.99069 1.22096 0.98542 0.96416 0.98768 1.22236 0.97629 0.95860 1.00713 1.21069 0.96366 0.99097 0.99062 1.19868 0.98603 0.84075 0.92537 1.44262 1.01983 1.09697 1.75675 1.19256 0.88129 1.10226 1.20009 0.91969 1.25441 0.99972 1.01334 0.96978 1.70088 1.19888 1.44887 1.21360 0.85571 0.79721 0.78259 0.78191 1.20505 1.22343 1.21605 1.20635 0.85250 0.95678 0.95066 0.91253 0.92281 0.93888 0.94634 0.93141 0.92214 0.90520 0.93044 0.74940 0.86839 0.88035 0.88827 0.90334 0.92668 0.89797 0.90949 0.91993 0.89855 0.92757 0.90001 0.90036 0.96684 0.98125 0.92175 0.94496 0.95691 0.95210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 8.20 71.98 0.59 -2.88 16 2 C -0.09 -2.92 0.76 -50.91 -0.04 -2.96 16 3 C -0.12 -4.04 8.29 71.98 0.60 -3.45 16 4 C -0.09 -3.08 4.15 30.30 0.13 -2.95 16 5 C 0.16 6.04 2.13 43.91 0.09 6.13 16 6 H 0.06 2.70 5.22 -2.39 -0.01 2.69 16 7 N -0.71 -20.46 4.98 -447.72 -2.23 -22.69 16 8 C 0.50 16.03 7.83 87.66 0.69 16.71 16 9 O -0.58 -25.14 16.18 16.01 0.26 -24.88 16 10 C 0.05 1.08 6.25 71.24 0.45 1.52 16 11 O -0.39 -10.34 9.59 -129.94 -1.25 -11.58 16 12 C 0.07 1.33 3.35 31.67 0.11 1.44 16 13 C -0.15 -2.50 6.62 31.89 0.21 -2.29 16 14 C -0.12 -1.43 6.83 31.67 0.22 -1.21 16 15 C -0.12 -1.55 6.80 31.32 0.21 -1.34 16 16 C -0.13 -2.14 6.56 31.32 0.21 -1.93 16 17 C -0.12 -5.24 4.74 28.31 0.13 -5.11 16 18 C 0.17 8.75 5.23 83.53 0.44 9.19 16 19 N -0.59 -29.41 2.60 -708.12 -1.84 -31.26 16 20 C -0.25 -13.11 8.98 84.03 0.75 -12.36 16 21 H 0.06 3.31 7.88 -2.91 -0.02 3.28 16 22 C -0.04 -2.24 4.91 84.86 0.42 -1.82 16 23 N -0.92 -50.91 9.43 21.65 0.20 -50.71 16 24 Si 0.95 44.56 29.60 68.60 2.03 46.59 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 27 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 28 C 0.16 6.78 4.01 87.59 0.35 7.13 16 29 H 0.07 1.58 8.13 -2.39 -0.02 1.56 16 30 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.04 1.23 7.57 -2.38 -0.02 1.21 16 32 H 0.03 1.45 7.48 -2.39 -0.02 1.43 16 33 H 0.05 1.59 8.12 -2.39 -0.02 1.57 16 34 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.08 2.07 7.66 -2.39 -0.02 2.05 16 36 H 0.05 2.11 6.66 -2.38 -0.02 2.09 16 37 H 0.41 8.63 8.49 -92.71 -0.79 7.84 16 38 H 0.11 1.56 8.11 -2.39 -0.02 1.54 16 39 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.09 1.16 7.82 -2.38 -0.02 1.14 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 47 H 0.05 1.18 8.07 -2.39 -0.02 1.17 16 48 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.08 4.06 5.30 -2.38 -0.01 4.05 16 50 H 0.01 0.68 7.96 -2.38 -0.02 0.66 16 51 H 0.00 0.03 8.12 -2.39 -0.02 0.01 16 52 H 0.06 3.39 6.05 -2.39 -0.01 3.37 16 53 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 54 H 0.02 1.05 6.69 -2.39 -0.02 1.04 16 55 H 0.03 1.25 7.81 -2.39 -0.02 1.23 16 Total: -1.00 -69.67 412.21 2.79 -66.88 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.07 Total: 23.80 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 5.54 Total: 3.84 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -3.87 Total: -104.66 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -0.99 Total: -36.46 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -69.67 2.79 -66.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707278350.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.548 kcal (2) G-P(sol) polarization free energy of solvation -69.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds