Wall clock time and date at job start Tue Mar 31 2020 22:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00031 * 2 1 4 4 H 1.09003 * 109.47173 * 29.99318 * 3 2 1 5 5 C 1.50698 * 109.46928 * 269.99785 * 3 2 1 6 6 O 1.21284 * 120.00289 * 354.99645 * 5 3 2 7 7 N 1.34782 * 120.00029 * 174.99954 * 5 3 2 8 8 C 1.46505 * 119.99740 * 179.97438 * 7 5 3 9 9 H 1.08995 * 110.21304 * 33.07092 * 8 7 5 10 10 C 1.52655 * 110.33720 * 271.06578 * 8 7 5 11 11 C 1.46236 * 114.19746 * 151.60206 * 10 8 7 12 12 N 1.50165 * 107.59080 * 58.37172 * 11 10 8 13 13 C 1.36936 * 120.53662 * 109.53755 * 12 11 10 14 14 H 1.08006 * 120.00233 * 156.67472 * 13 12 11 15 15 C 1.38810 * 120.00089 * 336.67447 * 13 12 11 16 16 N 1.31613 * 120.00190 * 340.42201 * 15 13 12 17 17 Si 1.86802 * 119.99921 * 160.41827 * 15 13 12 18 18 H 1.48504 * 109.47098 * 90.00534 * 17 15 13 19 19 H 1.48501 * 109.46899 * 210.00000 * 17 15 13 20 20 H 1.48494 * 109.47490 * 330.00228 * 17 15 13 21 21 C 1.43441 * 118.92877 * 289.56079 * 12 11 10 22 22 C 1.54900 * 116.07760 * 91.56234 * 21 12 11 23 23 C 1.52992 * 109.35934 * 78.84824 * 22 21 12 24 24 C 1.53006 * 109.35643 * 198.43736 * 22 21 12 25 25 C 1.50128 * 110.24331 * 155.00043 * 8 7 5 26 26 C 1.52997 * 109.47443 * 149.99479 * 3 2 1 27 27 C 1.53787 * 113.61438 * 37.49555 * 26 3 2 28 28 C 1.53775 * 87.08219 * 220.01914 * 27 26 3 29 29 C 1.53777 * 113.61439 * 300.00209 * 26 3 2 30 30 H 1.08999 * 109.47414 * 300.00567 * 1 2 3 31 31 H 1.08998 * 109.46599 * 60.00639 * 1 2 3 32 32 H 1.08996 * 109.46657 * 180.02562 * 1 2 3 33 33 H 0.97004 * 119.99924 * 0.02562 * 7 5 3 34 34 H 1.08998 * 108.61672 * 30.34038 * 10 8 7 35 35 H 1.09001 * 108.50800 * 272.78058 * 10 8 7 36 36 H 1.09001 * 109.84723 * 298.83180 * 11 10 8 37 37 H 1.09000 * 109.84796 * 177.91462 * 11 10 8 38 38 H 0.97001 * 120.00335 * 179.97438 * 16 15 13 39 39 H 1.08995 * 108.16214 * 213.28213 * 21 12 11 40 40 H 1.09000 * 108.15605 * 329.85071 * 21 12 11 41 41 H 1.09000 * 109.47270 * 59.99854 * 23 22 21 42 42 H 1.09001 * 109.47422 * 179.97438 * 23 22 21 43 43 H 1.08997 * 109.47494 * 299.99833 * 23 22 21 44 44 H 1.08996 * 109.47296 * 59.99821 * 24 22 21 45 45 H 1.09001 * 109.46781 * 180.02562 * 24 22 21 46 46 H 1.08999 * 109.46497 * 300.00107 * 24 22 21 47 47 H 1.09009 * 109.20588 * 96.45878 * 25 8 7 48 48 H 1.08995 * 109.21390 * 337.14579 * 25 8 7 49 49 H 1.09004 * 112.84996 * 168.80099 * 26 3 2 50 50 H 1.09006 * 113.61110 * 334.56839 * 27 26 3 51 51 H 1.08994 * 113.61244 * 105.46603 * 27 26 3 52 52 H 1.08994 * 113.61700 * 270.88581 * 28 27 26 53 53 H 1.09006 * 113.69039 * 139.99096 * 28 27 26 54 54 H 1.09004 * 113.61132 * 254.52482 * 29 26 3 55 55 H 1.09001 * 113.61798 * 25.34130 * 29 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2146 1.7643 -1.4208 6 8 1.9793 1.0105 -2.3413 7 7 2.6590 3.0124 -1.6686 8 6 2.8581 3.4582 -3.0499 9 1 2.1237 2.9911 -3.7060 10 6 4.2725 3.1235 -3.5167 11 6 4.3922 2.9054 -4.9577 12 7 3.9223 4.1543 -5.6464 13 6 4.8129 4.9706 -6.2909 14 1 4.4718 5.6283 -7.0768 15 6 6.1543 4.9529 -5.9342 16 7 6.5180 4.4717 -4.7645 17 14 7.4434 5.6121 -7.1146 18 1 7.6515 7.0606 -6.8618 19 1 8.7216 4.8849 -6.9080 20 1 6.9820 5.4148 -8.5122 21 6 2.5253 4.4786 -5.6178 22 6 2.0602 5.3836 -4.4498 23 6 2.4200 6.8377 -4.7606 24 6 0.5435 5.2628 -4.2877 25 6 2.7529 4.9534 -3.1335 26 6 3.3589 1.2633 0.7213 27 6 4.1599 -0.0222 0.4554 28 6 4.5528 0.0088 1.9418 29 6 3.2601 0.8050 2.1859 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8900 32 1 -0.3632 -1.0276 0.0005 33 1 2.8476 3.6152 -0.9324 34 1 4.6050 2.2225 -3.0012 35 1 4.9331 3.9434 -3.2345 36 1 3.7707 2.0615 -5.2572 37 1 5.4325 2.7089 -5.2171 38 1 7.4554 4.4589 -4.5154 39 1 2.2727 4.9759 -6.5542 40 1 1.9612 3.5471 -5.5712 41 1 1.9235 7.1463 -5.6805 42 1 2.0931 7.4763 -3.9399 43 1 3.4994 6.9268 -4.8828 44 1 0.2825 4.2268 -4.0721 45 1 0.2142 5.8994 -3.4664 46 1 0.0536 5.5768 -5.2093 47 1 3.7528 5.3859 -3.0965 48 1 2.1729 5.3201 -2.2866 49 1 3.9391 2.1764 0.5877 50 1 3.5382 -0.8761 0.1858 51 1 5.0018 0.1202 -0.2219 52 1 5.4605 0.5780 2.1417 53 1 4.5564 -0.9735 2.4144 54 1 3.3758 1.6154 2.9057 55 1 2.3916 0.1786 2.3898 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707282162.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:36 Heat of formation + Delta-G solvation = -57.159265 kcal Electronic energy + Delta-G solvation = -32480.353038 eV Core-core repulsion = 28518.056740 eV Total energy + Delta-G solvation = -3962.296297 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.56754 -40.36402 -39.08477 -37.77826 -36.21629 -35.88933 -33.37331 -32.51362 -30.53593 -28.92060 -28.04567 -27.31894 -27.17684 -26.43428 -25.29186 -24.63159 -23.16244 -21.73949 -21.42102 -20.23989 -19.55799 -18.58813 -18.33812 -17.77732 -17.21220 -16.93833 -16.62993 -16.13886 -15.93954 -15.67414 -15.48040 -15.24878 -15.12574 -14.94292 -14.53228 -14.22125 -14.01362 -13.84826 -13.51486 -13.31449 -13.25404 -13.12067 -13.05307 -12.89150 -12.78662 -12.65381 -12.51607 -12.38849 -12.37113 -12.24216 -11.93458 -11.69170 -11.65845 -11.47753 -11.44650 -11.34198 -11.25266 -11.13870 -11.06650 -10.99842 -10.47843 -10.14942 -9.87669 -8.62800 -7.79085 -5.18531 1.46893 1.51150 1.58279 1.62811 2.15412 2.56062 2.81953 3.34152 3.51747 3.57922 3.75600 3.77165 3.94662 3.98409 3.99715 4.07620 4.08987 4.22577 4.33539 4.44601 4.47976 4.53491 4.54609 4.58424 4.73967 4.78539 4.78978 4.84323 4.88369 4.93208 4.93619 4.97778 4.99908 5.07506 5.11742 5.13046 5.13758 5.21007 5.26022 5.31654 5.34040 5.35623 5.46795 5.53427 5.63661 5.64655 5.68944 5.74772 5.80839 6.06855 6.07498 6.44469 6.66983 7.19251 7.34083 7.92363 8.45531 9.25700 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.003596 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.450082 B = 7783.988074 C = 9034.564119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.373 6.373 3 C 0.091 3.909 4 H 0.118 0.882 5 C 0.485 3.515 6 O -0.578 6.578 7 N -0.707 5.707 8 C 0.163 3.837 9 H 0.064 0.936 10 C -0.114 4.114 11 C 0.174 3.826 12 N -0.595 5.595 13 C -0.248 4.248 14 H 0.062 0.938 15 C -0.039 4.039 16 N -0.915 5.915 17 Si 0.951 3.049 18 H -0.287 1.287 19 H -0.297 1.297 20 H -0.280 1.280 21 C 0.164 3.836 22 C -0.085 4.085 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.090 4.090 26 C -0.111 4.111 27 C -0.142 4.142 28 C -0.135 4.135 29 C -0.112 4.112 30 H 0.070 0.930 31 H 0.027 0.973 32 H 0.098 0.902 33 H 0.410 0.590 34 H 0.013 0.987 35 H 0.081 0.919 36 H 0.000 1.000 37 H 0.059 0.941 38 H 0.246 0.754 39 H 0.029 0.971 40 H 0.023 0.977 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.034 0.966 44 H 0.041 0.959 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.050 0.950 48 H 0.074 0.926 49 H 0.112 0.888 50 H 0.077 0.923 51 H 0.043 0.957 52 H 0.086 0.914 53 H 0.073 0.927 54 H 0.089 0.911 55 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.644 -2.263 16.662 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.290 6.290 3 C 0.029 3.971 4 H 0.136 0.864 5 C 0.272 3.728 6 O -0.457 6.457 7 N -0.360 5.360 8 C 0.058 3.942 9 H 0.082 0.918 10 C -0.154 4.154 11 C 0.050 3.950 12 N -0.316 5.316 13 C -0.378 4.378 14 H 0.080 0.920 15 C -0.235 4.235 16 N -0.561 5.561 17 Si 0.781 3.219 18 H -0.214 1.214 19 H -0.224 1.224 20 H -0.206 1.206 21 C 0.036 3.964 22 C -0.089 4.089 23 C -0.178 4.178 24 C -0.184 4.184 25 C -0.128 4.128 26 C -0.130 4.130 27 C -0.179 4.179 28 C -0.172 4.172 29 C -0.149 4.149 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.116 0.884 33 H 0.247 0.753 34 H 0.032 0.968 35 H 0.099 0.901 36 H 0.018 0.982 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.047 0.953 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.093 0.907 49 H 0.130 0.870 50 H 0.095 0.905 51 H 0.062 0.938 52 H 0.104 0.896 53 H 0.092 0.908 54 H 0.107 0.893 55 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.544 -3.008 16.041 19.991 hybrid contribution 1.170 0.574 -0.936 1.605 sum -10.374 -2.434 15.105 18.485 Atomic orbital electron populations 1.23002 0.79676 1.04005 1.00443 1.87947 1.21185 1.25642 1.94248 1.21964 0.98108 0.86919 0.90087 0.86441 1.22036 0.76156 0.81485 0.93097 1.90681 1.52386 1.54642 1.47946 1.46123 1.66659 1.14381 1.08806 1.20066 0.96414 0.95455 0.82217 0.91797 1.21099 0.96380 1.00426 0.97445 1.19888 0.97942 0.85641 0.91501 1.44261 1.02974 1.21954 1.62425 1.19281 0.89236 1.18060 1.11209 0.92009 1.25414 0.99402 1.01574 0.97099 1.70095 1.15257 1.51574 1.19215 0.85539 0.79255 0.77546 0.79606 1.21364 1.22380 1.20591 1.20602 0.84757 0.95473 0.95611 1.21836 0.95085 0.96396 0.95603 1.21640 1.00651 0.94939 1.00551 1.21753 0.93638 1.00957 1.02039 1.21622 1.00676 0.92964 0.97584 1.22808 0.92812 0.99791 0.97573 1.22830 0.98980 0.98280 0.97849 1.22780 0.98396 1.01276 0.94767 1.22823 0.98281 1.00211 0.93631 0.91167 0.95407 0.88391 0.75341 0.96797 0.90100 0.98191 0.92274 0.94501 0.95300 0.95820 0.93100 0.92259 0.94636 0.93954 0.91299 0.92261 0.93136 0.90727 0.87030 0.90464 0.93817 0.89558 0.90794 0.89250 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.81 113.37 1.23 1.69 16 2 O -0.37 -9.30 8.00 -129.99 -1.04 -10.34 16 3 C 0.09 2.03 2.52 29.85 0.08 2.11 16 4 H 0.12 1.80 7.79 -2.39 -0.02 1.79 16 5 C 0.49 15.29 7.12 87.66 0.62 15.92 16 6 O -0.58 -24.27 16.16 15.95 0.26 -24.01 16 7 N -0.71 -20.72 4.87 -447.50 -2.18 -22.90 16 8 C 0.16 6.01 2.17 43.95 0.10 6.11 16 9 H 0.06 2.68 5.16 -2.39 -0.01 2.67 16 10 C -0.11 -5.13 4.75 28.40 0.13 -4.99 16 11 C 0.17 8.79 5.24 83.58 0.44 9.23 16 12 N -0.59 -29.39 2.60 -707.84 -1.84 -31.23 16 13 C -0.25 -13.21 8.94 84.03 0.75 -12.46 16 14 H 0.06 3.29 7.89 -2.91 -0.02 3.27 16 15 C -0.04 -2.10 4.91 84.86 0.42 -1.68 16 16 N -0.92 -50.79 9.42 21.65 0.20 -50.58 16 17 Si 0.95 44.47 29.60 68.60 2.03 46.50 16 18 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 19 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 21 C 0.16 6.85 4.00 87.59 0.35 7.20 16 22 C -0.09 -2.92 0.76 -50.90 -0.04 -2.96 16 23 C -0.12 -4.06 8.28 71.98 0.60 -3.46 16 24 C -0.13 -3.44 8.20 71.98 0.59 -2.85 16 25 C -0.09 -3.09 4.15 30.30 0.13 -2.97 16 26 C -0.11 -2.22 3.55 -10.27 -0.04 -2.25 16 27 C -0.14 -3.42 7.48 31.12 0.23 -3.19 16 28 C -0.13 -2.32 8.08 31.12 0.25 -2.07 16 29 C -0.11 -1.64 7.54 31.12 0.23 -1.41 16 30 H 0.07 0.87 8.08 -2.39 -0.02 0.85 16 31 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.41 9.07 8.38 -92.71 -0.78 8.29 16 34 H 0.01 0.63 8.03 -2.39 -0.02 0.61 16 35 H 0.08 4.03 5.29 -2.39 -0.01 4.02 16 36 H 0.00 0.00 8.12 -2.39 -0.02 -0.02 16 37 H 0.06 3.33 6.06 -2.39 -0.01 3.32 16 38 H 0.25 13.47 8.31 -92.71 -0.77 12.70 16 39 H 0.03 1.21 7.83 -2.39 -0.02 1.19 16 40 H 0.02 1.00 6.68 -2.39 -0.02 0.98 16 41 H 0.05 1.60 8.13 -2.39 -0.02 1.58 16 42 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.03 1.46 7.45 -2.39 -0.02 1.44 16 44 H 0.04 1.21 7.57 -2.39 -0.02 1.19 16 45 H 0.07 1.57 8.12 -2.39 -0.02 1.55 16 46 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.05 2.08 6.66 -2.38 -0.02 2.07 16 48 H 0.07 2.04 7.67 -2.39 -0.02 2.03 16 49 H 0.11 2.08 7.94 -2.38 -0.02 2.06 16 50 H 0.08 2.13 6.98 -2.38 -0.02 2.11 16 51 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 52 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 53 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 54 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 55 H 0.09 1.29 7.77 -2.39 -0.02 1.27 16 Total: -1.00 -67.44 411.53 3.58 -63.86 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.08 Total: 26.77 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 6.07 Total: 1.95 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -3.82 Total: -104.72 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.78 Total: -34.36 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -67.44 3.58 -63.86 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707282162.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.699 kcal (2) G-P(sol) polarization free energy of solvation -67.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds