Wall clock time and date at job start Tue Mar 31 2020 22:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 113.99696 * 2 1 4 4 H 1.09000 * 109.47812 * 30.00009 * 3 2 1 5 5 C 1.50703 * 109.46857 * 150.00304 * 3 2 1 6 6 O 1.21277 * 120.00218 * 4.99193 * 5 3 2 7 7 N 1.34777 * 119.99646 * 184.99674 * 5 3 2 8 8 C 1.46502 * 119.99997 * 179.97438 * 7 5 3 9 9 H 1.09004 * 110.21111 * 33.06237 * 8 7 5 10 10 C 1.52653 * 110.33913 * 271.06893 * 8 7 5 11 11 C 1.46236 * 114.20216 * 151.59405 * 10 8 7 12 12 N 1.50167 * 107.58796 * 58.37547 * 11 10 8 13 13 C 1.36930 * 120.54283 * 109.54036 * 12 11 10 14 14 H 1.08005 * 119.99615 * 320.02336 * 13 12 11 15 15 C 1.38809 * 120.00635 * 140.02596 * 13 12 11 16 16 N 1.31616 * 120.00201 * 156.57498 * 15 13 12 17 17 Si 1.86797 * 119.99825 * 336.57189 * 15 13 12 18 18 H 1.48504 * 109.47232 * 95.56530 * 17 15 13 19 19 H 1.48506 * 109.47334 * 215.56668 * 17 15 13 20 20 H 1.48501 * 109.47319 * 335.57118 * 17 15 13 21 21 C 1.43442 * 118.92468 * 289.55571 * 12 11 10 22 22 C 1.54905 * 116.07675 * 91.56755 * 21 12 11 23 23 C 1.52991 * 109.36057 * 78.84636 * 22 21 12 24 24 C 1.53001 * 109.35592 * 198.43816 * 22 21 12 25 25 C 1.50123 * 110.25061 * 155.00013 * 8 7 5 26 26 C 1.53002 * 109.46811 * 269.99688 * 3 2 1 27 27 C 1.53786 * 113.61346 * 159.14087 * 26 3 2 28 28 C 1.53955 * 87.01642 * 220.04964 * 27 26 3 29 29 C 1.53772 * 87.11503 * 25.36119 * 28 27 26 30 30 H 1.08998 * 109.46628 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46979 * 300.00196 * 1 2 3 32 32 H 1.08993 * 109.46777 * 60.00242 * 1 2 3 33 33 H 0.96996 * 120.00578 * 359.97438 * 7 5 3 34 34 H 1.09002 * 108.62014 * 30.33759 * 10 8 7 35 35 H 1.09002 * 108.51033 * 272.77362 * 10 8 7 36 36 H 1.08998 * 109.84667 * 298.83465 * 11 10 8 37 37 H 1.09005 * 109.84971 * 177.91021 * 11 10 8 38 38 H 0.97006 * 120.00459 * 179.97438 * 16 15 13 39 39 H 1.08994 * 108.15996 * 213.27922 * 21 12 11 40 40 H 1.09001 * 108.16016 * 329.85216 * 21 12 11 41 41 H 1.08995 * 109.47292 * 59.99776 * 23 22 21 42 42 H 1.09004 * 109.47247 * 180.02562 * 23 22 21 43 43 H 1.09007 * 109.47248 * 299.99623 * 23 22 21 44 44 H 1.08999 * 109.47548 * 59.99955 * 24 22 21 45 45 H 1.09003 * 109.46440 * 179.97438 * 24 22 21 46 46 H 1.09005 * 109.46652 * 299.99528 * 24 22 21 47 47 H 1.08997 * 109.20918 * 96.46064 * 25 8 7 48 48 H 1.08995 * 109.20915 * 337.14168 * 25 8 7 49 49 H 1.09003 * 112.84926 * 290.33382 * 26 3 2 50 50 H 1.09003 * 113.61253 * 334.56578 * 27 26 3 51 51 H 1.08999 * 113.61343 * 105.47053 * 27 26 3 52 52 H 1.08995 * 113.53614 * 270.80476 * 28 27 26 53 53 H 1.09000 * 113.74041 * 139.94703 * 28 27 26 54 54 H 1.08997 * 113.61826 * 220.09127 * 29 28 27 55 55 H 1.09004 * 113.61703 * 89.18330 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3387 1.2639 0.7104 6 8 3.7897 0.2046 1.0914 7 7 4.0254 2.4040 0.9223 8 6 5.3166 2.3638 1.6133 9 1 5.8402 1.4368 1.3793 10 6 5.1156 2.4909 3.1212 11 6 6.1517 1.8390 3.9212 12 7 7.4699 2.4494 3.5408 13 6 8.1365 3.2662 4.4145 14 1 7.5883 3.9792 5.0125 15 6 9.5169 3.1780 4.5317 16 7 10.2063 4.2055 4.9803 17 14 10.3959 1.6009 4.0527 18 1 10.8888 1.7134 2.6564 19 1 11.5448 1.3773 4.9667 20 1 9.4530 0.4582 4.1541 21 6 8.0193 2.1633 2.2470 22 6 7.6473 3.1533 1.1151 23 6 8.5123 4.4095 1.2355 24 6 7.9034 2.4926 -0.2409 25 6 6.1533 3.5467 1.2205 26 6 2.2177 1.7713 -1.4425 27 6 2.3477 3.2971 -1.5845 28 6 1.4920 3.1707 -2.8581 29 6 0.9121 1.8841 -2.2473 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 3.6649 3.2513 0.6173 34 1 4.1513 2.0545 3.3818 35 1 5.0937 3.5497 3.3794 36 1 6.1643 0.7698 3.7101 37 1 5.9596 2.0045 4.9814 38 1 11.1709 4.1437 5.0626 39 1 9.1054 2.1420 2.3363 40 1 7.6887 1.1680 1.9501 41 1 9.5639 4.1362 1.1494 42 1 8.2516 5.1077 0.4400 43 1 8.3371 4.8799 2.2031 44 1 7.2933 1.5935 -0.3281 45 1 7.6417 3.1876 -1.0388 46 1 8.9572 2.2259 -0.3218 47 1 6.0409 4.3302 1.9698 48 1 5.8126 3.9224 0.2557 49 1 3.0017 1.2165 -1.9579 50 1 1.8597 3.8532 -0.7840 51 1 3.3673 3.6326 -1.7739 52 1 2.0780 2.9998 -3.7611 53 1 0.7581 3.9681 -2.9746 54 1 0.7744 1.0807 -2.9709 55 1 0.0310 2.0532 -1.6283 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707282164.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:47 Heat of formation + Delta-G solvation = -56.930202 kcal Electronic energy + Delta-G solvation = -32372.863565 eV Core-core repulsion = 28410.577200 eV Total energy + Delta-G solvation = -3962.286364 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -41.65519 -40.50703 -39.22156 -37.85726 -36.30198 -35.89209 -34.12195 -32.58818 -30.58089 -29.03434 -28.11869 -27.43818 -27.32602 -26.43994 -25.49170 -24.67912 -23.13539 -21.67976 -21.49895 -20.40124 -20.09145 -18.62912 -18.16607 -17.96013 -17.32804 -17.08656 -16.65308 -16.47539 -16.00745 -15.69664 -15.58736 -15.51239 -14.98523 -14.94007 -14.62605 -14.43533 -14.19021 -13.97730 -13.91996 -13.61185 -13.40386 -13.33502 -13.01899 -12.97447 -12.92265 -12.83665 -12.57877 -12.41131 -12.35314 -12.15248 -12.03338 -11.92803 -11.84459 -11.63333 -11.47510 -11.36054 -11.26624 -11.22975 -11.17354 -10.83042 -10.52607 -10.22896 -10.01430 -8.63837 -8.18084 -5.54558 1.27673 1.37967 1.48919 1.59726 1.89908 2.42972 2.97211 3.05612 3.29899 3.49107 3.68770 3.77151 3.81467 3.90561 3.95039 3.95855 3.99751 4.12179 4.27256 4.28335 4.37270 4.43303 4.54205 4.55618 4.58293 4.65250 4.74199 4.80073 4.83768 4.85394 4.86268 4.90571 4.90994 4.95888 5.01710 5.06073 5.09618 5.11231 5.13375 5.14877 5.22460 5.27734 5.28809 5.37280 5.45206 5.49337 5.57185 5.64564 5.71768 6.00603 6.10197 6.21324 6.62065 7.03819 7.29062 7.66250 8.15378 9.01244 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018968 B = 0.003226 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.787192 B = 8676.958303 C = 9329.719336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.392 6.392 3 C 0.088 3.912 4 H 0.112 0.888 5 C 0.508 3.492 6 O -0.574 6.574 7 N -0.701 5.701 8 C 0.160 3.840 9 H 0.069 0.931 10 C -0.129 4.129 11 C 0.139 3.861 12 N -0.607 5.607 13 C -0.241 4.241 14 H 0.046 0.954 15 C 0.003 3.997 16 N -0.936 5.936 17 Si 0.919 3.081 18 H -0.279 1.279 19 H -0.308 1.308 20 H -0.273 1.273 21 C 0.154 3.846 22 C -0.082 4.082 23 C -0.118 4.118 24 C -0.132 4.132 25 C -0.092 4.092 26 C -0.132 4.132 27 C -0.138 4.138 28 C -0.133 4.133 29 C -0.130 4.130 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.413 0.587 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.029 0.971 37 H 0.064 0.936 38 H 0.261 0.739 39 H 0.018 0.982 40 H 0.029 0.971 41 H 0.027 0.973 42 H 0.067 0.933 43 H 0.039 0.961 44 H 0.049 0.951 45 H 0.078 0.922 46 H 0.045 0.955 47 H 0.063 0.937 48 H 0.085 0.915 49 H 0.079 0.921 50 H 0.102 0.898 51 H 0.076 0.924 52 H 0.079 0.921 53 H 0.084 0.916 54 H 0.068 0.932 55 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.156 0.121 -17.961 28.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.310 6.310 3 C 0.027 3.973 4 H 0.129 0.871 5 C 0.295 3.705 6 O -0.453 6.453 7 N -0.354 5.354 8 C 0.055 3.945 9 H 0.087 0.913 10 C -0.169 4.169 11 C 0.015 3.985 12 N -0.330 5.330 13 C -0.371 4.371 14 H 0.063 0.937 15 C -0.195 4.195 16 N -0.580 5.580 17 Si 0.749 3.251 18 H -0.206 1.206 19 H -0.236 1.236 20 H -0.198 1.198 21 C 0.027 3.973 22 C -0.085 4.085 23 C -0.176 4.176 24 C -0.189 4.189 25 C -0.130 4.130 26 C -0.151 4.151 27 C -0.176 4.176 28 C -0.171 4.171 29 C -0.168 4.168 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.251 0.749 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.035 0.965 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.096 0.904 46 H 0.064 0.936 47 H 0.082 0.918 48 H 0.104 0.896 49 H 0.098 0.902 50 H 0.121 0.879 51 H 0.094 0.906 52 H 0.098 0.902 53 H 0.102 0.898 54 H 0.087 0.913 55 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.597 -0.759 -17.608 27.875 hybrid contribution 0.979 -0.459 0.403 1.154 sum -20.618 -1.219 -17.205 26.881 Atomic orbital electron populations 1.23262 0.78923 1.04149 1.01729 1.88003 1.21751 1.26205 1.95078 1.22083 0.91869 0.86902 0.96412 0.87085 1.21080 0.87109 0.83657 0.78672 1.90710 1.70430 1.31822 1.52318 1.45952 1.21074 1.09588 1.58800 1.20042 0.83363 0.99830 0.91258 0.91304 1.21167 0.98566 1.01749 0.95406 1.20447 0.85084 0.94806 0.98141 1.44263 1.22393 1.55615 1.10745 1.18489 0.89341 1.10944 1.18349 0.93652 1.25854 0.97513 0.98062 0.98063 1.69964 1.06907 1.30066 1.51044 0.86223 0.77846 0.84358 0.76688 1.20585 1.23635 1.19797 1.20832 0.95665 0.95244 0.85568 1.21748 0.95073 0.96374 0.95321 1.21610 0.97728 0.97063 1.01172 1.21808 1.00918 1.00508 0.95694 1.21656 0.92940 0.96315 1.02096 1.23023 1.00717 0.98216 0.93165 1.23124 1.01768 0.93095 0.99574 1.22779 0.99405 0.97822 0.97050 1.23013 0.96052 0.98698 0.98998 0.88933 0.92993 0.91090 0.74915 0.92687 0.91634 0.95296 0.91785 0.92957 0.96450 0.95269 0.95369 0.91433 0.94136 0.93211 0.90358 0.93596 0.91786 0.89617 0.90222 0.87933 0.90569 0.90217 0.89771 0.91336 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 10.58 113.37 1.20 1.41 16 2 O -0.39 -9.24 9.85 -129.99 -1.28 -10.52 16 3 C 0.09 1.69 2.44 29.85 0.07 1.76 16 4 H 0.11 1.45 7.62 -2.39 -0.02 1.43 16 5 C 0.51 13.93 7.18 87.66 0.63 14.56 16 6 O -0.57 -22.31 16.16 15.97 0.26 -22.05 16 7 N -0.70 -16.19 4.85 -447.51 -2.17 -18.36 16 8 C 0.16 4.83 2.17 43.95 0.10 4.93 16 9 H 0.07 2.53 5.16 -2.38 -0.01 2.52 16 10 C -0.13 -4.34 4.93 28.40 0.14 -4.20 16 11 C 0.14 5.66 6.11 83.58 0.51 6.17 16 12 N -0.61 -28.42 2.13 -707.82 -1.51 -29.93 16 13 C -0.24 -13.30 9.24 84.03 0.78 -12.52 16 14 H 0.05 2.74 8.06 -2.91 -0.02 2.72 16 15 C 0.00 0.15 5.28 84.86 0.45 0.60 16 16 N -0.94 -57.18 13.97 21.65 0.30 -56.88 16 17 Si 0.92 47.44 25.26 68.60 1.73 49.18 16 18 H -0.28 -13.91 6.74 99.48 0.67 -13.24 16 19 H -0.31 -16.03 7.11 99.48 0.71 -15.32 16 20 H -0.27 -14.08 7.11 99.48 0.71 -13.37 16 21 C 0.15 6.68 3.04 87.60 0.27 6.94 16 22 C -0.08 -2.83 0.76 -50.90 -0.04 -2.87 16 23 C -0.12 -4.41 8.28 71.98 0.60 -3.81 16 24 C -0.13 -3.79 8.20 71.98 0.59 -3.20 16 25 C -0.09 -2.66 4.15 30.30 0.13 -2.54 16 26 C -0.13 -1.91 3.32 -10.27 -0.03 -1.95 16 27 C -0.14 -1.29 6.19 31.18 0.19 -1.10 16 28 C -0.13 -1.09 8.09 31.18 0.25 -0.84 16 29 C -0.13 -1.28 6.14 31.12 0.19 -1.09 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 0.59 8.09 -2.39 -0.02 0.57 16 32 H 0.07 0.64 5.04 -2.39 -0.01 0.63 16 33 H 0.41 6.51 7.10 -92.71 -0.66 5.85 16 34 H 0.05 1.76 8.03 -2.39 -0.02 1.74 16 35 H 0.07 2.21 6.94 -2.39 -0.02 2.19 16 36 H 0.03 1.21 8.12 -2.39 -0.02 1.19 16 37 H 0.06 2.62 7.99 -2.38 -0.02 2.60 16 38 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 39 H 0.02 0.85 3.25 -2.39 -0.01 0.84 16 40 H 0.03 1.25 6.68 -2.39 -0.02 1.23 16 41 H 0.03 1.11 8.13 -2.39 -0.02 1.09 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.04 1.80 7.45 -2.38 -0.02 1.78 16 44 H 0.05 1.43 7.57 -2.39 -0.02 1.41 16 45 H 0.08 1.80 8.12 -2.39 -0.02 1.78 16 46 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 47 H 0.06 2.05 6.66 -2.39 -0.02 2.03 16 48 H 0.09 1.89 7.67 -2.39 -0.02 1.87 16 49 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.10 0.61 7.98 -2.39 -0.02 0.59 16 51 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 53 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 54 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 55 H 0.10 0.68 6.49 -2.38 -0.02 0.66 16 Total: -1.00 -73.91 404.85 3.52 -70.39 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.17 Total: 15.90 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 6.01 Total: 2.26 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -3.38 Total: -105.17 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -1.02 Total: -32.57 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.73 Total: 49.18 kcal Total: -73.91 3.52 -70.39 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707282164.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.463 kcal (2) G-P(sol) polarization free energy of solvation -73.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds