Wall clock time and date at job start Tue Mar 31 2020 21:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.57145 * 2 1 4 4 C 1.53180 * 109.51995 * 120.15386 * 2 1 3 5 5 C 1.53174 * 109.03797 * 62.92710 * 4 2 1 6 6 C 1.53090 * 109.16291 * 56.97871 * 5 4 2 7 7 H 1.09005 * 109.48034 * 62.38546 * 6 5 4 8 8 C 1.52998 * 109.48503 * 182.40789 * 6 5 4 9 9 C 1.50693 * 109.47600 * 184.97857 * 8 6 5 10 10 O 1.21286 * 119.99771 * 359.97438 * 9 8 6 11 11 N 1.34785 * 120.00198 * 180.02562 * 9 8 6 12 12 C 1.46925 * 120.62832 * 359.97438 * 11 9 8 13 13 C 1.53193 * 108.77416 * 126.41364 * 12 11 9 14 14 C 1.53042 * 109.30989 * 54.63098 * 13 12 11 15 15 C 1.53040 * 109.54210 * 298.63492 * 14 13 12 16 16 H 1.08997 * 109.49586 * 301.38256 * 15 14 13 17 17 C 1.53000 * 109.49542 * 181.31762 * 15 14 13 18 18 N 1.46499 * 109.47100 * 65.00285 * 17 15 14 19 19 C 1.36939 * 119.99547 * 179.97438 * 18 17 15 20 20 H 1.07993 * 120.00716 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99459 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00154 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99635 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99668 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99848 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99841 * 23 21 19 27 27 C 1.46925 * 120.62859 * 180.02562 * 11 9 8 28 28 O 1.42903 * 109.42820 * 302.40025 * 6 5 4 29 29 C 1.42903 * 114.09631 * 61.13259 * 28 6 5 30 30 H 1.09001 * 109.47512 * 299.84358 * 1 2 3 31 31 H 1.09001 * 109.47157 * 59.84873 * 1 2 3 32 32 H 1.09001 * 109.46939 * 179.83998 * 1 2 3 33 33 H 1.09003 * 109.46987 * 180.15433 * 3 2 1 34 34 H 1.08997 * 109.47001 * 300.15165 * 3 2 1 35 35 H 1.09004 * 109.47446 * 60.15538 * 3 2 1 36 36 H 1.09002 * 109.54166 * 303.06029 * 4 2 1 37 37 H 1.08999 * 109.61895 * 182.84104 * 4 2 1 38 38 H 1.09001 * 109.52601 * 297.07673 * 5 4 2 39 39 H 1.08997 * 109.57551 * 176.91419 * 5 4 2 40 40 H 1.09004 * 109.47085 * 64.97397 * 8 6 5 41 41 H 1.09005 * 109.47031 * 304.98062 * 8 6 5 42 42 H 1.09004 * 109.58654 * 6.62879 * 12 11 9 43 43 H 1.08994 * 109.70022 * 246.27112 * 12 11 9 44 44 H 1.09001 * 109.49819 * 294.68453 * 13 12 11 45 45 H 1.08997 * 109.52665 * 174.60446 * 13 12 11 46 46 H 1.09007 * 109.45496 * 178.61058 * 14 13 12 47 47 H 1.08995 * 109.45957 * 58.65987 * 14 13 12 48 48 H 1.08994 * 109.47445 * 304.99957 * 17 15 14 49 49 H 1.08999 * 109.46641 * 185.00086 * 17 15 14 50 50 H 0.96998 * 120.00185 * 359.97438 * 18 17 15 51 51 H 0.96993 * 120.00007 * 0.02562 * 22 21 19 52 52 H 1.08998 * 109.58134 * 113.79810 * 27 11 9 53 53 H 1.09000 * 109.58901 * 353.37908 * 27 11 9 54 54 H 1.09000 * 109.47848 * 178.87753 * 29 28 6 55 55 H 1.09004 * 109.47824 * 58.85678 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0425 1.4416 0.0000 4 6 2.0419 -0.7252 1.2484 5 6 1.5877 -2.1872 1.1983 6 6 2.0971 -2.8277 -0.0955 7 1 3.1871 -2.8198 -0.1004 8 6 1.5970 -4.2711 -0.1817 9 6 2.1972 -4.9393 -1.3917 10 8 2.9505 -4.3217 -2.1143 11 7 1.8962 -6.2230 -1.6715 12 6 0.9849 -6.9839 -0.8059 13 6 -0.1351 -7.5750 -1.6678 14 6 0.4800 -8.3925 -2.8060 15 6 1.3368 -7.4801 -3.6866 16 1 0.7197 -6.6745 -4.0844 17 6 1.9247 -8.2916 -4.8428 18 7 0.8415 -8.7613 -5.7102 19 6 1.1287 -9.5131 -6.8181 20 1 2.1537 -9.7595 -7.0527 21 6 0.1023 -9.9585 -7.6397 22 7 -1.1469 -9.6586 -7.3536 23 14 0.4941 -10.9834 -9.1515 24 1 0.7031 -10.0869 -10.3168 25 1 -0.6367 -11.9043 -9.4319 26 1 1.7274 -11.7739 -8.9076 27 6 2.4740 -6.8881 -2.8473 28 8 1.6102 -2.0869 -1.2163 29 6 2.0417 -0.7249 -1.2475 30 1 -0.3634 0.5114 0.8914 31 1 -0.3633 0.5162 -0.8886 32 1 -0.3633 -1.0277 -0.0029 33 1 3.1326 1.4396 -0.0028 34 1 1.6779 1.9568 -0.8886 35 1 1.6824 1.9553 0.8914 36 1 1.6355 -0.2475 2.1399 37 1 3.1306 -0.6824 1.2759 38 1 0.4988 -2.2315 1.2225 39 1 1.9932 -2.7252 2.0552 40 1 0.5103 -4.2747 -0.2663 41 1 1.8933 -4.8125 0.7167 42 1 0.5564 -6.3210 -0.0541 43 1 1.5314 -7.7888 -0.3145 44 1 -0.7382 -6.7681 -2.0842 45 1 -0.7643 -8.2204 -1.0550 46 1 -0.3152 -8.8346 -3.4064 47 1 1.1027 -9.1841 -2.3891 48 1 2.4693 -9.1481 -4.4456 49 1 2.6048 -7.6638 -5.4184 50 1 -0.0791 -8.5397 -5.4997 51 1 -1.3503 -9.1261 -6.5688 52 1 3.1432 -7.6854 -2.5239 53 1 3.0280 -6.1622 -3.4424 54 1 1.6454 -0.2384 -2.1387 55 1 3.1310 -0.6891 -1.2676 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713236171.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:13 Heat of formation + Delta-G solvation = -117.947893 kcal Electronic energy + Delta-G solvation = -30649.141498 eV Core-core repulsion = 26684.209208 eV Total energy + Delta-G solvation = -3964.932290 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.51536 -40.65792 -38.89959 -36.88332 -36.26354 -34.70981 -34.05324 -32.96541 -31.76162 -30.47208 -28.19479 -27.32766 -26.86683 -26.44817 -25.24410 -24.39387 -23.19535 -22.60625 -21.31620 -19.96855 -19.77424 -19.41984 -18.11034 -17.49858 -17.10108 -16.82242 -16.43469 -16.25649 -15.98522 -15.85038 -15.71113 -15.41540 -15.29176 -15.08928 -14.78503 -14.53089 -14.42182 -13.90102 -13.83511 -13.66792 -13.52415 -13.18138 -13.05337 -12.93122 -12.82581 -12.79299 -12.75785 -12.63641 -12.44256 -12.15382 -11.94830 -11.90611 -11.86186 -11.77965 -11.70302 -11.49888 -11.34695 -11.28900 -11.10670 -10.96027 -10.75651 -10.21898 -9.65204 -9.15005 -8.44336 -5.37748 1.56186 1.65417 1.67398 1.81915 1.98161 2.68908 2.85809 3.35691 3.45303 3.63508 3.66377 3.70973 3.77701 3.82084 3.85477 3.96810 4.02972 4.12781 4.17148 4.22422 4.27996 4.37947 4.39269 4.50438 4.52918 4.58268 4.60928 4.65457 4.69625 4.72048 4.77967 4.79304 4.80342 4.82872 4.87192 4.88256 4.94341 5.01534 5.06470 5.10258 5.12619 5.14427 5.23201 5.28668 5.29967 5.38929 5.40111 5.50330 5.53403 5.54563 6.35373 6.45332 6.46098 7.05071 7.20916 7.95365 8.07064 9.07654 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019652 B = 0.002076 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.464538 B =13484.804891 C =14032.478121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 C -0.138 4.138 4 C -0.110 4.110 5 C -0.144 4.144 6 C 0.101 3.899 7 H 0.044 0.956 8 C -0.126 4.126 9 C 0.507 3.493 10 O -0.582 6.582 11 N -0.613 5.613 12 C 0.106 3.894 13 C -0.129 4.129 14 C -0.107 4.107 15 C -0.093 4.093 16 H 0.046 0.954 17 C 0.164 3.836 18 N -0.753 5.753 19 C -0.337 4.337 20 H 0.065 0.935 21 C -0.105 4.105 22 N -0.973 5.973 23 Si 1.133 2.867 24 H -0.286 1.286 25 H -0.289 1.289 26 H -0.272 1.272 27 C 0.129 3.871 28 O -0.392 6.392 29 C 0.070 3.930 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.145 0.855 42 H 0.118 0.882 43 H 0.091 0.909 44 H 0.054 0.946 45 H 0.101 0.899 46 H 0.041 0.959 47 H 0.071 0.929 48 H 0.028 0.972 49 H 0.008 0.992 50 H 0.361 0.639 51 H 0.243 0.757 52 H 0.082 0.918 53 H 0.065 0.935 54 H 0.083 0.917 55 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.900 17.423 27.453 32.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 C -0.195 4.195 4 C -0.147 4.147 5 C -0.182 4.182 6 C 0.043 3.957 7 H 0.063 0.937 8 C -0.165 4.165 9 C 0.297 3.703 10 O -0.461 6.461 11 N -0.346 5.346 12 C -0.015 4.015 13 C -0.167 4.167 14 C -0.144 4.144 15 C -0.113 4.113 16 H 0.064 0.936 17 C 0.037 3.963 18 N -0.398 5.398 19 C -0.469 4.469 20 H 0.083 0.917 21 C -0.296 4.296 22 N -0.621 5.621 23 Si 0.957 3.043 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.197 1.197 27 C 0.005 3.995 28 O -0.312 6.312 29 C -0.007 4.007 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.134 0.866 41 H 0.163 0.837 42 H 0.136 0.864 43 H 0.110 0.890 44 H 0.073 0.927 45 H 0.120 0.880 46 H 0.060 0.940 47 H 0.090 0.910 48 H 0.046 0.954 49 H 0.026 0.974 50 H 0.194 0.806 51 H 0.053 0.947 52 H 0.101 0.899 53 H 0.083 0.917 54 H 0.101 0.899 55 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.791 16.821 25.622 31.022 hybrid contribution 0.544 0.996 0.617 1.292 sum 5.335 17.817 26.239 32.162 Atomic orbital electron populations 1.21784 0.93623 1.01925 1.01766 1.21197 0.96957 0.96288 0.95526 1.21777 1.00988 0.94163 1.02589 1.21661 1.00689 0.94908 0.97457 1.22237 1.02662 0.96414 0.96856 1.21900 0.97095 0.90033 0.86664 0.93749 1.21881 1.03455 0.94352 0.96835 1.21339 0.80699 0.80770 0.87499 1.90689 1.38819 1.64178 1.52452 1.48260 1.47403 1.11917 1.26977 1.22057 0.90154 0.97018 0.92268 1.21918 0.98047 0.99769 0.97002 1.21460 0.98732 0.97666 0.96590 1.21489 0.97318 0.97389 0.95088 0.93568 1.20653 0.90366 0.95055 0.90229 1.42542 1.04560 1.63944 1.28773 1.20436 0.94868 1.27847 1.03712 0.91684 1.27307 0.92523 1.03497 1.06302 1.70961 1.19259 1.42546 1.29325 0.82566 0.75135 0.74699 0.71906 1.21277 1.21561 1.19718 1.21311 0.94537 0.96717 0.86891 1.87954 1.73754 1.22877 1.46585 1.22645 0.97847 0.81842 0.98342 0.91476 0.93379 0.92717 0.92563 0.92565 0.91128 0.89747 0.92011 0.90065 0.88529 0.86616 0.83712 0.86358 0.89041 0.92743 0.88029 0.93980 0.91001 0.95406 0.97369 0.80641 0.94658 0.89941 0.91654 0.89900 0.94250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.08 71.98 0.58 -1.26 16 2 C -0.10 -1.39 0.78 -52.09 -0.04 -1.43 16 3 C -0.14 -1.55 8.49 71.98 0.61 -0.94 16 4 C -0.11 -1.24 4.81 30.71 0.15 -1.09 16 5 C -0.14 -1.61 5.05 30.68 0.16 -1.45 16 6 C 0.10 1.88 2.19 30.62 0.07 1.94 16 7 H 0.04 0.98 7.96 -2.38 -0.02 0.96 16 8 C -0.13 -2.00 3.76 29.85 0.11 -1.89 16 9 C 0.51 13.38 7.58 87.65 0.66 14.04 16 10 O -0.58 -21.27 14.83 10.72 0.16 -21.11 16 11 N -0.61 -14.85 2.97 -818.81 -2.43 -17.28 16 12 C 0.11 1.66 6.34 86.36 0.55 2.21 16 13 C -0.13 -2.65 6.08 30.67 0.19 -2.46 16 14 C -0.11 -3.16 5.05 30.62 0.15 -3.00 16 15 C -0.09 -3.23 2.38 -10.70 -0.03 -3.26 16 16 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 17 C 0.16 7.11 5.65 86.38 0.49 7.60 16 18 N -0.75 -40.37 5.32 -343.46 -1.83 -42.20 16 19 C -0.34 -19.96 9.99 84.03 0.84 -19.12 16 20 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 21 C -0.11 -6.34 5.50 84.86 0.47 -5.87 16 22 N -0.97 -62.62 13.70 21.65 0.30 -62.32 16 23 Si 1.13 53.57 29.92 68.60 2.05 55.62 16 24 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 C 0.13 3.87 5.72 86.38 0.49 4.36 16 28 O -0.39 -9.88 9.06 -135.21 -1.23 -11.11 16 29 C 0.07 1.43 5.54 72.01 0.40 1.83 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.86 6.14 -2.39 -0.01 0.84 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.85 6.63 -2.39 -0.02 0.84 16 39 H 0.10 0.64 8.14 -2.39 -0.02 0.63 16 40 H 0.12 1.55 7.69 -2.38 -0.02 1.53 16 41 H 0.15 1.11 7.94 -2.38 -0.02 1.09 16 42 H 0.12 1.03 5.93 -2.39 -0.01 1.01 16 43 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.04 1.51 7.15 -2.38 -0.02 1.50 16 47 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 50 H 0.36 19.92 5.68 -92.71 -0.53 19.40 16 51 H 0.24 15.63 6.77 -92.71 -0.63 15.00 16 52 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 53 H 0.06 2.31 7.01 -2.39 -0.02 2.29 16 54 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 55 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -80.44 413.39 3.33 -77.11 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 0.46 Total: 31.07 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 5.85 Total: -9.78 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -3.96 Total: -121.80 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -1.07 Total: -32.22 kcal Atomic # 14 Polarization: 53.57 SS G_CDS: 2.05 Total: 55.62 kcal Total: -80.44 3.33 -77.11 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713236171.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.839 kcal (2) G-P(sol) polarization free energy of solvation -80.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds