Wall clock time and date at job start Tue Mar 31 2020 21:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.57647 * 2 1 4 4 C 1.53180 * 109.52404 * 120.16004 * 2 1 3 5 5 C 1.53175 * 109.03606 * 62.92174 * 4 2 1 6 6 C 1.53092 * 109.16344 * 56.98567 * 5 4 2 7 7 H 1.08999 * 109.49220 * 62.37875 * 6 5 4 8 8 C 1.52999 * 109.48062 * 182.41091 * 6 5 4 9 9 C 1.50706 * 109.46969 * 184.94124 * 8 6 5 10 10 O 1.21276 * 119.99946 * 359.97438 * 9 8 6 11 11 N 1.34782 * 119.99869 * 179.97438 * 9 8 6 12 12 C 1.46919 * 120.62891 * 0.02562 * 11 9 8 13 13 C 1.53196 * 108.77295 * 233.57783 * 12 11 9 14 14 C 1.53031 * 109.31336 * 305.36815 * 13 12 11 15 15 C 1.53044 * 109.54079 * 61.36468 * 14 13 12 16 16 H 1.08992 * 109.49775 * 58.58384 * 15 14 13 17 17 C 1.53000 * 109.49937 * 178.68224 * 15 14 13 18 18 N 1.46501 * 109.47085 * 294.99780 * 17 15 14 19 19 C 1.36934 * 119.99691 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00234 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99743 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99889 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00001 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47471 * 90.00230 * 23 21 19 25 25 H 1.48504 * 109.47124 * 210.00252 * 23 21 19 26 26 H 1.48498 * 109.47126 * 329.99745 * 23 21 19 27 27 C 1.46922 * 120.62883 * 179.71527 * 11 9 8 28 28 O 1.42905 * 109.41215 * 302.38824 * 6 5 4 29 29 C 1.42905 * 114.09831 * 61.16158 * 28 6 5 30 30 H 1.08997 * 109.46923 * 299.84410 * 1 2 3 31 31 H 1.09000 * 109.46506 * 59.84089 * 1 2 3 32 32 H 1.09000 * 109.47026 * 179.84323 * 1 2 3 33 33 H 1.09002 * 109.47271 * 180.15279 * 3 2 1 34 34 H 1.08996 * 109.47155 * 300.16078 * 3 2 1 35 35 H 1.08996 * 109.46702 * 60.15714 * 3 2 1 36 36 H 1.09005 * 109.54069 * 303.05765 * 4 2 1 37 37 H 1.08999 * 109.54515 * 182.79108 * 4 2 1 38 38 H 1.09004 * 109.52714 * 297.07587 * 5 4 2 39 39 H 1.09001 * 109.57654 * 176.92317 * 5 4 2 40 40 H 1.08998 * 109.46815 * 304.93485 * 8 6 5 41 41 H 1.08999 * 109.47860 * 64.93852 * 8 6 5 42 42 H 1.09002 * 109.59305 * 353.36771 * 12 11 9 43 43 H 1.08996 * 109.58937 * 113.79652 * 12 11 9 44 44 H 1.09008 * 109.49300 * 65.32136 * 13 12 11 45 45 H 1.09004 * 109.49789 * 185.40812 * 13 12 11 46 46 H 1.09006 * 109.45914 * 181.38608 * 14 13 12 47 47 H 1.08998 * 109.46437 * 301.35429 * 14 13 12 48 48 H 1.09006 * 109.46988 * 54.99958 * 17 15 14 49 49 H 1.09000 * 109.47015 * 174.99915 * 17 15 14 50 50 H 0.96999 * 120.00059 * 0.02562 * 18 17 15 51 51 H 0.97001 * 119.99769 * 179.97438 * 22 21 19 52 52 H 1.08997 * 109.59141 * 246.20762 * 27 11 9 53 53 H 1.08999 * 109.58435 * 6.63795 * 27 11 9 54 54 H 1.09000 * 109.47932 * 58.81878 * 29 28 6 55 55 H 1.08993 * 109.48024 * 178.86013 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0427 1.4416 0.0000 4 6 2.0419 -0.7254 1.2483 5 6 1.5877 -2.1873 1.1981 6 6 2.0971 -2.8277 -0.0957 7 1 3.1870 -2.8199 -0.1009 8 6 1.5968 -4.2711 -0.1820 9 6 2.1963 -4.9390 -1.3927 10 8 2.9492 -4.3213 -2.1155 11 7 1.8959 -6.2228 -1.6720 12 6 0.9851 -6.9839 -0.8061 13 6 1.6795 -8.2810 -0.3793 14 6 2.1440 -9.0399 -1.6243 15 6 3.1502 -8.1856 -2.3989 16 1 3.9979 -7.9494 -1.7559 17 6 3.6386 -8.9583 -3.6258 18 7 4.3873 -10.1406 -3.1921 19 6 4.9240 -10.9903 -4.1221 20 1 4.7957 -10.7887 -5.1754 21 6 5.6329 -12.1108 -3.7112 22 7 6.1492 -12.9273 -4.6052 23 14 5.8540 -12.4599 -1.8895 24 1 4.7296 -13.3009 -1.4065 25 1 7.1364 -13.1774 -1.6751 26 1 5.8722 -11.1788 -1.1387 27 6 2.4675 -6.8857 -2.8521 28 8 1.6098 -2.0868 -1.2163 29 6 2.0416 -0.7249 -1.2477 30 1 -0.3633 0.5114 0.8914 31 1 -0.3632 0.5163 -0.8886 32 1 -0.3633 -1.0277 -0.0028 33 1 3.1327 1.4396 -0.0027 34 1 1.6779 1.9569 -0.8885 35 1 1.6826 1.9552 0.8914 36 1 1.6357 -0.2477 2.1399 37 1 3.1308 -0.6825 1.2741 38 1 0.4988 -2.2316 1.2224 39 1 1.9931 -2.7254 2.0550 40 1 1.8937 -4.8127 0.7160 41 1 0.5100 -4.2747 -0.2660 42 1 0.7406 -6.3928 0.0764 43 1 0.0730 -7.2210 -1.3538 44 1 2.5412 -8.0439 0.2449 45 1 0.9808 -8.8993 0.1843 46 1 2.6166 -9.9752 -1.3243 47 1 1.2851 -9.2548 -2.2601 48 1 2.7821 -9.2698 -4.2237 49 1 4.2861 -8.3178 -4.2245 50 1 4.5021 -10.3218 -2.2461 51 1 6.6449 -13.7101 -4.3180 52 1 1.6737 -7.1149 -3.5629 53 1 3.2016 -6.2297 -3.3198 54 1 3.1309 -0.6893 -1.2677 55 1 1.6454 -0.2383 -2.1388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713236172.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:18 Heat of formation + Delta-G solvation = -113.961352 kcal Electronic energy + Delta-G solvation = -30582.565015 eV Core-core repulsion = 26617.805594 eV Total energy + Delta-G solvation = -3964.759421 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.47590 -40.62430 -38.84362 -36.73904 -36.23941 -34.56998 -34.03141 -33.04576 -32.17642 -30.57269 -28.16888 -27.58363 -26.99102 -26.39755 -25.05055 -24.04182 -23.11336 -22.56867 -21.34831 -19.88240 -19.78309 -19.67342 -18.01595 -17.46758 -17.12492 -16.63798 -16.46665 -16.15645 -15.97149 -15.88641 -15.58703 -15.30399 -15.20879 -15.03012 -14.83228 -14.57015 -14.06946 -14.04231 -13.78617 -13.74160 -13.58535 -13.47752 -13.03997 -12.93657 -12.87975 -12.84491 -12.79644 -12.67155 -12.40352 -12.23525 -12.07949 -11.92920 -11.90240 -11.77555 -11.75881 -11.57330 -11.39377 -11.31032 -11.09344 -10.98810 -10.71952 -10.20191 -9.60340 -9.32132 -8.04948 -5.38959 1.34618 1.39335 1.46573 1.70731 2.01708 2.46196 2.86542 3.25699 3.48646 3.56636 3.67930 3.77372 3.79593 3.83897 3.91264 4.00816 4.05233 4.15030 4.20523 4.26822 4.31451 4.40975 4.42864 4.53820 4.59242 4.62267 4.65199 4.66379 4.73349 4.79667 4.80579 4.83089 4.87290 4.88823 4.90264 4.95977 4.97468 5.03414 5.07524 5.14256 5.17624 5.21171 5.24356 5.31727 5.32912 5.40188 5.48021 5.55073 5.56356 5.72608 6.18782 6.36223 6.50040 7.04833 7.25395 7.80177 8.01024 9.16635 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.024926 B = 0.002048 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.053618 B =13668.183109 C =13894.871580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.099 4.099 3 C -0.139 4.139 4 C -0.111 4.111 5 C -0.144 4.144 6 C 0.102 3.898 7 H 0.038 0.962 8 C -0.125 4.125 9 C 0.507 3.493 10 O -0.582 6.582 11 N -0.613 5.613 12 C 0.104 3.896 13 C -0.129 4.129 14 C -0.114 4.114 15 C -0.095 4.095 16 H 0.059 0.941 17 C 0.160 3.840 18 N -0.754 5.754 19 C -0.238 4.238 20 H 0.054 0.946 21 C -0.066 4.066 22 N -0.983 5.983 23 Si 0.959 3.041 24 H -0.271 1.271 25 H -0.295 1.295 26 H -0.255 1.255 27 C 0.127 3.873 28 O -0.388 6.388 29 C 0.070 3.930 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.138 0.862 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.102 0.898 46 H 0.052 0.948 47 H 0.071 0.929 48 H 0.032 0.968 49 H 0.014 0.986 50 H 0.367 0.633 51 H 0.259 0.741 52 H 0.078 0.922 53 H 0.066 0.934 54 H 0.035 0.965 55 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.793 27.456 19.949 38.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.100 4.100 3 C -0.196 4.196 4 C -0.149 4.149 5 C -0.182 4.182 6 C 0.043 3.957 7 H 0.056 0.944 8 C -0.165 4.165 9 C 0.297 3.703 10 O -0.462 6.462 11 N -0.345 5.345 12 C -0.017 4.017 13 C -0.167 4.167 14 C -0.152 4.152 15 C -0.115 4.115 16 H 0.078 0.922 17 C 0.033 3.967 18 N -0.400 5.400 19 C -0.369 4.369 20 H 0.072 0.928 21 C -0.257 4.257 22 N -0.634 5.634 23 Si 0.785 3.215 24 H -0.197 1.197 25 H -0.222 1.222 26 H -0.180 1.180 27 C 0.003 3.997 28 O -0.307 6.307 29 C -0.006 4.006 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.156 0.844 41 H 0.141 0.859 42 H 0.136 0.864 43 H 0.102 0.898 44 H 0.081 0.919 45 H 0.120 0.880 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.050 0.950 49 H 0.032 0.968 50 H 0.200 0.800 51 H 0.067 0.933 52 H 0.096 0.904 53 H 0.085 0.915 54 H 0.054 0.946 55 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.494 27.645 19.220 37.943 hybrid contribution 1.178 -0.684 0.103 1.366 sum -16.316 26.961 19.323 36.966 Atomic orbital electron populations 1.21773 0.93291 1.02073 1.01829 1.21200 0.97204 0.96147 0.95420 1.21781 1.00863 0.94298 1.02642 1.21672 1.00498 0.95046 0.97673 1.22233 1.02827 0.96293 0.96806 1.21865 0.96847 0.90210 0.86732 0.94355 1.21861 1.03866 0.94068 0.96666 1.21305 0.80565 0.81097 0.87358 1.90693 1.38531 1.64458 1.52489 1.48251 1.47481 1.11554 1.27242 1.22067 0.91872 0.92704 0.95052 1.21932 1.01450 0.96487 0.96826 1.21551 0.98335 0.97869 0.97411 1.21608 0.98358 0.94943 0.96580 0.92246 1.20710 0.93789 0.86911 0.95252 1.42649 1.65466 1.27365 1.04497 1.19044 1.26092 1.02171 0.89597 0.92829 1.25563 1.00368 0.97346 1.02423 1.69898 1.42323 1.16549 1.34610 0.85359 0.77339 0.78444 0.80348 1.19652 1.22161 1.17995 1.21413 0.98031 0.92430 0.87822 1.87930 1.73569 1.22771 1.46406 1.22647 0.97713 0.81885 0.98405 0.91655 0.93073 0.92460 0.92849 0.92304 0.91247 0.89829 0.92436 0.89631 0.89001 0.84440 0.85868 0.86399 0.89773 0.91871 0.87979 0.92957 0.91045 0.95040 0.96783 0.79973 0.93261 0.90424 0.91548 0.94643 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 8.08 71.98 0.58 -0.92 16 2 C -0.10 -1.25 0.78 -52.09 -0.04 -1.29 16 3 C -0.14 -1.42 8.49 71.98 0.61 -0.81 16 4 C -0.11 -1.22 4.81 30.71 0.15 -1.07 16 5 C -0.14 -1.51 5.05 30.68 0.16 -1.36 16 6 C 0.10 1.79 2.19 30.62 0.07 1.86 16 7 H 0.04 0.86 7.96 -2.39 -0.02 0.84 16 8 C -0.13 -1.82 3.76 29.85 0.11 -1.71 16 9 C 0.51 12.56 7.58 87.66 0.66 13.22 16 10 O -0.58 -20.47 14.83 10.77 0.16 -20.31 16 11 N -0.61 -13.59 2.97 -818.01 -2.43 -16.02 16 12 C 0.10 1.40 6.34 86.37 0.55 1.95 16 13 C -0.13 -2.08 6.08 30.67 0.19 -1.90 16 14 C -0.11 -2.85 5.05 30.62 0.15 -2.69 16 15 C -0.10 -2.90 2.39 -10.56 -0.03 -2.92 16 16 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 17 C 0.16 6.37 5.65 86.38 0.49 6.86 16 18 N -0.75 -36.38 5.12 -343.44 -1.76 -38.14 16 19 C -0.24 -14.07 10.47 84.04 0.88 -13.19 16 20 H 0.05 3.48 8.06 -2.91 -0.02 3.46 16 21 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 22 N -0.98 -64.23 13.97 21.65 0.30 -63.93 16 23 Si 0.96 45.99 27.74 68.60 1.90 47.89 16 24 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 26 H -0.26 -11.15 6.52 99.48 0.65 -10.50 16 27 C 0.13 3.52 5.75 86.52 0.50 4.01 16 28 O -0.39 -8.80 9.06 -135.19 -1.22 -10.02 16 29 C 0.07 1.30 5.54 72.01 0.40 1.70 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.73 6.14 -2.39 -0.01 0.71 16 33 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 38 H 0.09 0.76 6.63 -2.39 -0.02 0.74 16 39 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.14 1.09 7.69 -2.39 -0.02 1.07 16 41 H 0.12 1.26 7.94 -2.39 -0.02 1.24 16 42 H 0.12 0.77 5.93 -2.39 -0.01 0.75 16 43 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 45 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 46 H 0.05 1.52 7.15 -2.38 -0.02 1.50 16 47 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 49 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.37 16.71 4.71 -92.71 -0.44 16.27 16 51 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 52 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 53 H 0.07 2.20 7.00 -2.39 -0.02 2.18 16 54 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 55 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -79.61 412.01 3.20 -76.42 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.35 Total: 25.84 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 5.89 Total: -1.73 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -3.88 Total: -118.09 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -1.06 Total: -30.34 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.90 Total: 47.89 kcal Total: -79.61 3.20 -76.42 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713236172.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.546 kcal (2) G-P(sol) polarization free energy of solvation -79.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds