Wall clock time and date at job start Tue Mar 31 2020 21:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.52181 * 2 1 4 4 C 1.53174 * 109.52306 * 239.81299 * 2 1 3 5 5 C 1.53177 * 109.04691 * 297.06599 * 4 2 1 6 6 C 1.53089 * 109.16499 * 303.03982 * 5 4 2 7 7 H 1.09004 * 109.47903 * 297.60038 * 6 5 4 8 8 C 1.52996 * 109.48378 * 177.57535 * 6 5 4 9 9 C 1.50702 * 109.47159 * 175.02007 * 8 6 5 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99928 * 179.72352 * 9 8 6 12 12 C 1.46923 * 120.63273 * 0.28271 * 11 9 8 13 13 C 1.53188 * 108.78248 * 126.36632 * 12 11 9 14 14 C 1.53041 * 109.31323 * 54.63155 * 13 12 11 15 15 C 1.53042 * 109.53960 * 298.64003 * 14 13 12 16 16 H 1.09003 * 109.49533 * 301.37974 * 15 14 13 17 17 C 1.52999 * 109.49733 * 181.31305 * 15 14 13 18 18 N 1.46502 * 109.46805 * 65.00339 * 17 15 14 19 19 C 1.36941 * 119.99523 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00289 * 359.97438 * 19 18 17 21 21 C 1.38818 * 119.99500 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00369 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99602 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47326 * 60.00202 * 23 21 19 25 25 H 1.48503 * 109.46789 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47269 * 299.99901 * 23 21 19 27 27 C 1.46929 * 120.63092 * 179.97438 * 11 9 8 28 28 O 1.42904 * 109.42437 * 57.58484 * 6 5 4 29 29 C 1.42905 * 114.10224 * 298.85102 * 28 6 5 30 30 H 1.09002 * 109.47560 * 299.87323 * 1 2 3 31 31 H 1.09000 * 109.47084 * 59.87261 * 1 2 3 32 32 H 1.09001 * 109.47326 * 179.87773 * 1 2 3 33 33 H 1.09002 * 109.47097 * 180.12311 * 3 2 1 34 34 H 1.08994 * 109.46981 * 300.12753 * 3 2 1 35 35 H 1.08994 * 109.46904 * 60.12728 * 3 2 1 36 36 H 1.09000 * 109.54455 * 56.93893 * 4 2 1 37 37 H 1.09005 * 109.54335 * 177.11876 * 4 2 1 38 38 H 1.08994 * 109.53935 * 183.12559 * 5 4 2 39 39 H 1.09011 * 109.51027 * 62.93661 * 5 4 2 40 40 H 1.09004 * 109.47066 * 55.02210 * 8 6 5 41 41 H 1.08994 * 109.47405 * 295.02041 * 8 6 5 42 42 H 1.09001 * 109.58890 * 246.15338 * 12 11 9 43 43 H 1.08997 * 109.58518 * 6.57129 * 12 11 9 44 44 H 1.08997 * 109.49933 * 174.58934 * 13 12 11 45 45 H 1.09003 * 109.49114 * 294.65356 * 13 12 11 46 46 H 1.09004 * 109.45546 * 58.65884 * 14 13 12 47 47 H 1.09004 * 109.46076 * 178.63179 * 14 13 12 48 48 H 1.08998 * 109.46940 * 184.99844 * 17 15 14 49 49 H 1.08995 * 109.47235 * 304.99806 * 17 15 14 50 50 H 0.97000 * 119.99968 * 359.97438 * 18 17 15 51 51 H 0.96996 * 120.00246 * 180.02562 * 22 21 19 52 52 H 1.09003 * 109.58730 * 353.42298 * 27 11 9 53 53 H 1.09003 * 109.58586 * 113.84896 * 27 11 9 54 54 H 1.08993 * 109.48018 * 181.14023 * 29 28 6 55 55 H 1.09005 * 109.47648 * 301.17637 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0412 1.4421 0.0000 4 6 2.0418 -0.7259 -1.2479 5 6 1.5879 -2.1880 -1.1972 6 6 2.0970 -2.8276 0.0972 7 1 3.1870 -2.8197 0.1023 8 6 1.5968 -4.2709 0.1842 9 6 2.1968 -4.9384 1.3949 10 8 2.9500 -4.3204 2.1173 11 7 1.8917 -6.2202 1.6782 12 6 0.9807 -6.9817 0.8130 13 6 1.6725 -8.2819 0.3914 14 6 2.1327 -9.0382 1.6397 15 6 3.1397 -8.1841 2.4135 16 1 3.9896 -7.9526 1.7714 17 6 3.6238 -8.9543 3.6436 18 7 4.3702 -10.1397 3.2149 19 6 4.9039 -10.9874 4.1487 20 1 4.7750 -10.7818 5.2010 21 6 5.6107 -12.1110 3.7424 22 7 5.7684 -12.3613 2.4599 23 14 6.3394 -13.2670 5.0162 24 1 5.2524 -13.8150 5.8666 25 1 7.0398 -14.3820 4.3294 26 1 7.3047 -12.5233 5.8649 27 6 2.4692 -6.8847 2.8546 28 8 1.6098 -2.0861 1.2174 29 6 2.0416 -0.7241 1.2480 30 1 -0.3634 0.5119 0.8911 31 1 -0.3633 0.5158 -0.8888 32 1 -0.3634 -1.0277 -0.0022 33 1 3.1312 1.4411 -0.0022 34 1 1.6765 1.9569 -0.8888 35 1 1.6802 1.9555 0.8911 36 1 1.6355 -0.2488 -2.1397 37 1 3.1306 -0.6817 -1.2746 38 1 1.9944 -2.7258 -2.0536 39 1 0.4990 -2.2322 -1.2215 40 1 1.8933 -4.8130 -0.7138 41 1 0.5102 -4.2744 0.2686 42 1 0.0670 -7.2148 1.3597 43 1 0.7393 -6.3927 -0.0717 44 1 0.9732 -8.9001 -0.1715 45 1 2.5356 -8.0489 -0.2323 46 1 1.2720 -9.2491 2.2744 47 1 2.6038 -9.9755 1.3434 48 1 4.2719 -8.3135 4.2416 49 1 2.7655 -9.2616 4.2409 50 1 4.4864 -10.3242 2.2697 51 1 6.2619 -13.1466 2.1761 52 1 3.2097 -6.2316 3.3164 53 1 1.6795 -7.1097 3.5715 54 1 1.6453 -0.2372 2.1390 55 1 3.1308 -0.6886 1.2681 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713236173.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:23 Heat of formation + Delta-G solvation = -116.835944 kcal Electronic energy + Delta-G solvation = -30485.659969 eV Core-core repulsion = 26520.775897 eV Total energy + Delta-G solvation = -3964.884072 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.47596 -40.62274 -38.81376 -36.60615 -36.23387 -34.56095 -34.00154 -32.91657 -31.87604 -30.49442 -28.15923 -27.43825 -26.94068 -26.39761 -25.18602 -24.25286 -23.08300 -22.56729 -21.23586 -19.87945 -19.76148 -19.21089 -18.01399 -17.46297 -17.10061 -16.67049 -16.43768 -16.17213 -15.93473 -15.76628 -15.48868 -15.36540 -15.20401 -15.04970 -14.75543 -14.56016 -14.04550 -14.02493 -13.71339 -13.58543 -13.49754 -13.29214 -13.02978 -12.91670 -12.85072 -12.80322 -12.75055 -12.68200 -12.41281 -12.20460 -12.06742 -11.94681 -11.92162 -11.75447 -11.71384 -11.55095 -11.38292 -11.30399 -11.08788 -10.93180 -10.71383 -10.19680 -9.59577 -9.01571 -7.96594 -5.25565 1.45777 1.49267 1.55338 1.70811 2.02302 2.55172 2.86875 3.36199 3.50026 3.68317 3.78780 3.79605 3.80677 3.84580 3.93592 4.04353 4.08151 4.16044 4.23265 4.31332 4.41536 4.42111 4.45657 4.54572 4.59620 4.62880 4.66315 4.68512 4.74032 4.79966 4.81239 4.83425 4.88165 4.89276 4.90253 4.96482 4.98017 5.03978 5.08085 5.14933 5.20030 5.24412 5.25168 5.32302 5.40196 5.41034 5.46362 5.50663 5.55758 5.56997 6.25352 6.36723 6.50598 7.25327 7.31802 8.06619 8.31660 9.26675 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026572 B = 0.001929 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.497541 B =14512.407560 C =14920.001443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.100 4.100 3 C -0.138 4.138 4 C -0.111 4.111 5 C -0.144 4.144 6 C 0.102 3.898 7 H 0.038 0.962 8 C -0.126 4.126 9 C 0.507 3.493 10 O -0.582 6.582 11 N -0.612 5.612 12 C 0.106 3.894 13 C -0.128 4.128 14 C -0.108 4.108 15 C -0.092 4.092 16 H 0.050 0.950 17 C 0.158 3.842 18 N -0.741 5.741 19 C -0.250 4.250 20 H 0.073 0.927 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.976 3.024 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.280 1.280 27 C 0.128 3.872 28 O -0.387 6.387 29 C 0.070 3.930 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.137 0.863 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.118 0.882 44 H 0.100 0.900 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.046 0.954 48 H 0.010 0.990 49 H 0.027 0.973 50 H 0.375 0.625 51 H 0.252 0.748 52 H 0.066 0.934 53 H 0.078 0.922 54 H 0.089 0.911 55 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.538 25.607 -12.609 32.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.100 4.100 3 C -0.196 4.196 4 C -0.149 4.149 5 C -0.182 4.182 6 C 0.044 3.956 7 H 0.056 0.944 8 C -0.165 4.165 9 C 0.297 3.703 10 O -0.462 6.462 11 N -0.345 5.345 12 C -0.015 4.015 13 C -0.166 4.166 14 C -0.146 4.146 15 C -0.111 4.111 16 H 0.069 0.931 17 C 0.031 3.969 18 N -0.384 5.384 19 C -0.381 4.381 20 H 0.091 0.909 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.804 3.196 24 H -0.202 1.202 25 H -0.219 1.219 26 H -0.207 1.207 27 C 0.005 3.995 28 O -0.307 6.307 29 C -0.006 4.006 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.154 0.846 41 H 0.142 0.858 42 H 0.104 0.896 43 H 0.136 0.864 44 H 0.118 0.882 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.064 0.936 48 H 0.028 0.972 49 H 0.045 0.955 50 H 0.207 0.793 51 H 0.061 0.939 52 H 0.084 0.916 53 H 0.096 0.904 54 H 0.107 0.893 55 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -16.246 25.804 -11.919 32.738 hybrid contribution 1.340 -0.954 0.589 1.747 sum -14.906 24.850 -11.329 31.113 Atomic orbital electron populations 1.21773 0.93270 1.02076 1.01844 1.21201 0.97234 0.96168 0.95399 1.21779 1.00864 0.94253 1.02655 1.21669 1.00498 0.94999 0.97711 1.22234 1.02846 0.96324 0.96763 1.21852 0.96822 0.90143 0.86774 0.94402 1.21863 1.03906 0.94123 0.96608 1.21309 0.80548 0.81084 0.87364 1.90686 1.38555 1.64409 1.52546 1.48253 1.47194 1.11662 1.27379 1.22054 0.91858 0.92501 0.95109 1.21913 1.01283 0.96587 0.96845 1.21465 0.98047 0.97798 0.97253 1.21377 0.98075 0.94926 0.96769 0.93149 1.20719 0.93731 0.87498 0.94951 1.42506 1.64229 1.25857 1.05799 1.19609 1.26228 1.02512 0.89788 0.90862 1.25584 1.02370 1.00719 0.98041 1.69806 1.47565 1.29584 1.14905 0.85184 0.78206 0.78162 0.78030 1.20200 1.21893 1.20655 1.21220 0.98000 0.92391 0.87918 1.87928 1.73566 1.22774 1.46393 1.22651 0.97711 0.81865 0.98419 0.93033 0.91642 0.92484 0.92861 0.91237 0.92263 0.89808 0.92455 0.89057 0.89578 0.84564 0.85778 0.89615 0.86355 0.88193 0.92273 0.91318 0.93567 0.97181 0.95475 0.79266 0.93925 0.91590 0.90422 0.89313 0.94667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 8.08 71.98 0.58 -0.99 16 2 C -0.10 -1.31 0.77 -52.09 -0.04 -1.36 16 3 C -0.14 -1.48 8.49 71.98 0.61 -0.87 16 4 C -0.11 -1.31 4.81 30.71 0.15 -1.16 16 5 C -0.14 -1.67 5.06 30.68 0.16 -1.52 16 6 C 0.10 1.93 2.19 30.62 0.07 2.00 16 7 H 0.04 0.90 7.96 -2.38 -0.02 0.88 16 8 C -0.13 -2.03 3.76 29.85 0.11 -1.92 16 9 C 0.51 13.47 7.58 87.66 0.66 14.14 16 10 O -0.58 -21.36 14.83 10.72 0.16 -21.20 16 11 N -0.61 -14.96 2.98 -819.80 -2.44 -17.40 16 12 C 0.11 1.69 6.34 86.36 0.55 2.24 16 13 C -0.13 -2.57 6.08 30.67 0.19 -2.38 16 14 C -0.11 -3.17 5.06 30.62 0.15 -3.01 16 15 C -0.09 -3.12 2.36 -10.87 -0.03 -3.15 16 16 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 17 C 0.16 6.69 5.66 86.38 0.49 7.18 16 18 N -0.74 -39.09 5.32 -343.45 -1.83 -40.92 16 19 C -0.25 -14.43 9.99 84.03 0.84 -13.59 16 20 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 21 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 22 N -0.97 -60.07 13.06 21.65 0.28 -59.78 16 23 Si 0.98 47.05 29.55 68.60 2.03 49.08 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 26 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 27 C 0.13 3.85 5.68 86.21 0.49 4.34 16 28 O -0.39 -9.15 9.06 -135.22 -1.23 -10.37 16 29 C 0.07 1.35 5.54 72.01 0.40 1.75 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.76 6.13 -2.39 -0.01 0.75 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 0.85 6.62 -2.38 -0.02 0.83 16 40 H 0.14 1.35 7.69 -2.38 -0.02 1.33 16 41 H 0.12 1.44 7.94 -2.39 -0.02 1.42 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 43 H 0.12 1.04 5.94 -2.39 -0.01 1.03 16 44 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.05 1.66 7.15 -2.38 -0.02 1.65 16 48 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 49 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.37 20.82 6.85 -92.71 -0.63 20.19 16 51 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 52 H 0.07 2.32 7.01 -2.39 -0.02 2.30 16 53 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 54 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 55 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -76.10 415.06 3.03 -73.08 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.21 Total: 29.75 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 5.85 Total: -2.22 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -3.99 Total: -118.11 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.07 Total: -31.57 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -76.10 3.03 -73.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713236173.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.761 kcal (2) G-P(sol) polarization free energy of solvation -76.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds