Wall clock time and date at job start Tue Mar 31 2020 22:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 110.54531 * 2 1 4 4 C 1.54100 * 110.48958 * 237.37970 * 2 1 3 5 5 O 1.43746 * 107.29659 * 239.30083 * 4 2 1 6 6 C 1.44478 * 106.98554 * 26.51171 * 5 4 2 7 7 H 1.08997 * 110.61802 * 78.42806 * 6 5 4 8 8 C 1.52998 * 110.65583 * 201.45586 * 6 5 4 9 9 C 1.50704 * 109.46924 * 289.03991 * 8 6 5 10 10 O 1.21281 * 120.00114 * 0.02562 * 9 8 6 11 11 N 1.34776 * 119.99767 * 180.02562 * 9 8 6 12 12 C 1.46924 * 120.63241 * 359.97438 * 11 9 8 13 13 C 1.53194 * 108.77265 * 126.37283 * 12 11 9 14 14 C 1.53043 * 109.31454 * 54.63798 * 13 12 11 15 15 C 1.53045 * 109.53699 * 298.63595 * 14 13 12 16 16 H 1.09005 * 109.49357 * 301.41000 * 15 14 13 17 17 C 1.52995 * 109.49909 * 181.31614 * 15 14 13 18 18 C 1.53001 * 109.47403 * 64.99611 * 17 15 14 19 19 N 1.46494 * 109.47186 * 179.97438 * 18 17 15 20 20 C 1.36944 * 119.99852 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99780 * 359.97438 * 20 19 18 22 22 C 1.38808 * 119.99975 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00209 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99881 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47078 * 90.00139 * 24 22 20 26 26 H 1.48508 * 109.47072 * 209.99813 * 24 22 20 27 27 H 1.48499 * 109.47330 * 330.00054 * 24 22 20 28 28 C 1.46933 * 120.62722 * 179.71828 * 11 9 8 29 29 C 1.54817 * 110.48484 * 122.61561 * 2 1 3 30 30 H 1.08997 * 109.47230 * 297.38641 * 1 2 3 31 31 H 1.09003 * 109.46346 * 57.38357 * 1 2 3 32 32 H 1.08992 * 109.47608 * 177.38213 * 1 2 3 33 33 H 1.08999 * 109.47591 * 182.61281 * 3 2 1 34 34 H 1.08998 * 109.47032 * 302.61664 * 3 2 1 35 35 H 1.09009 * 109.47276 * 62.61609 * 3 2 1 36 36 H 1.09002 * 109.87699 * 358.72391 * 4 2 1 37 37 H 1.08998 * 109.87837 * 119.72576 * 4 2 1 38 38 H 1.08995 * 109.47463 * 49.03955 * 8 6 5 39 39 H 1.09002 * 109.47077 * 169.04300 * 8 6 5 40 40 H 1.08996 * 109.58882 * 246.15675 * 12 11 9 41 41 H 1.08992 * 109.58546 * 6.44806 * 12 11 9 42 42 H 1.08995 * 109.50089 * 174.58682 * 13 12 11 43 43 H 1.09003 * 109.49982 * 294.68464 * 13 12 11 44 44 H 1.08999 * 109.45814 * 58.65176 * 14 13 12 45 45 H 1.08998 * 109.46494 * 178.63049 * 14 13 12 46 46 H 1.09003 * 109.47064 * 184.99592 * 17 15 14 47 47 H 1.09001 * 109.47106 * 305.00118 * 17 15 14 48 48 H 1.08999 * 109.47537 * 300.00530 * 18 17 15 49 49 H 1.09008 * 109.46838 * 59.99854 * 18 17 15 50 50 H 0.97000 * 120.00482 * 0.02562 * 19 18 17 51 51 H 0.97002 * 120.00480 * 180.02562 * 23 22 20 52 52 H 1.09002 * 109.58473 * 353.41864 * 28 11 9 53 53 H 1.08997 * 109.58183 * 113.83990 * 28 11 9 54 54 H 1.09002 * 110.90844 * 215.99347 * 29 2 1 55 55 H 1.08997 * 110.90682 * 339.56437 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0669 1.4326 0.0000 4 6 2.0694 -0.7782 -1.2158 5 8 2.8753 -1.8557 -0.7103 6 6 2.3778 -2.1721 0.6087 7 1 1.4694 -2.7709 0.5428 8 6 3.4457 -2.8990 1.4284 9 6 3.6348 -4.2917 0.8847 10 8 2.9802 -4.6659 -0.0652 11 7 4.5314 -5.1214 1.4541 12 6 5.3322 -4.6824 2.6050 13 6 5.1624 -5.6974 3.7397 14 6 5.5147 -7.0952 3.2255 15 6 4.5633 -7.4773 2.0892 16 1 3.5354 -7.4500 2.4507 17 6 4.8952 -8.8876 1.5978 18 6 4.6168 -9.8956 2.7146 19 7 4.9340 -11.2461 2.2439 20 6 4.7621 -12.3195 3.0767 21 1 4.3930 -12.1704 4.0806 22 6 5.0632 -13.5991 2.6308 23 7 5.5134 -13.7808 1.4075 24 14 4.8292 -15.0632 3.7671 25 1 3.4538 -15.5995 3.6067 26 1 5.8154 -16.1191 3.4233 27 1 5.0327 -14.6352 5.1744 28 6 4.7225 -6.4842 0.9390 29 6 2.0718 -0.7817 1.2216 30 1 -0.3633 0.4727 0.9125 31 1 -0.3632 0.5540 -0.8657 32 1 -0.3634 -1.0265 -0.0469 33 1 3.1557 1.4127 -0.0468 34 1 1.6757 1.9672 -0.8656 35 1 1.7518 1.9388 0.9126 36 1 1.2391 -1.1779 -1.7980 37 1 2.6752 -0.1197 -1.8382 38 1 4.3870 -2.3531 1.3644 39 1 3.1285 -2.9554 2.4698 40 1 6.3825 -4.6261 2.3192 41 1 4.9902 -3.7015 2.9352 42 1 5.8252 -5.4355 4.5644 43 1 4.1287 -5.6869 4.0857 44 1 6.5404 -7.0985 2.8569 45 1 5.4181 -7.8159 4.0374 46 1 4.2777 -9.1253 0.7316 47 1 5.9477 -8.9367 1.3182 48 1 5.2342 -9.6580 3.5809 49 1 3.5643 -9.8465 2.9943 50 1 5.2659 -11.3801 1.3423 51 1 5.7235 -14.6751 1.0958 52 1 3.9769 -6.6928 0.1719 53 1 5.7222 -6.5775 0.5148 54 1 2.9797 -0.3187 1.6082 55 1 1.3141 -0.8586 2.0013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714216699.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:45 Heat of formation + Delta-G solvation = -118.101803 kcal Electronic energy + Delta-G solvation = -29833.076976 eV Core-core repulsion = 25868.138012 eV Total energy + Delta-G solvation = -3964.938964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.49746 -40.61579 -38.87816 -36.92993 -35.52320 -35.05759 -33.43368 -33.03953 -32.34390 -29.51345 -28.29100 -28.16567 -26.83249 -26.26320 -25.69278 -23.57991 -23.02629 -22.31969 -21.14769 -20.46612 -19.71213 -19.12809 -18.21769 -17.48246 -16.90044 -16.73506 -16.44705 -16.24679 -15.95901 -15.80223 -15.59408 -15.28852 -15.01818 -14.88069 -14.57547 -14.44394 -14.34505 -14.17503 -14.06284 -13.91086 -13.56484 -13.29091 -12.98129 -12.93600 -12.85959 -12.72680 -12.46007 -12.44951 -12.43329 -12.24381 -12.11265 -11.95265 -11.84128 -11.68253 -11.66618 -11.58617 -11.53759 -11.44096 -11.26103 -10.92471 -10.73466 -10.54479 -9.60784 -9.01793 -7.96797 -5.26613 1.45825 1.48569 1.57035 1.66410 1.99922 2.55005 2.92048 3.36521 3.43919 3.50224 3.70487 3.74391 3.84272 3.87943 3.89779 4.00491 4.09082 4.16166 4.19205 4.32556 4.35889 4.38953 4.42912 4.52132 4.57805 4.59011 4.64958 4.66042 4.76005 4.77129 4.77682 4.80312 4.85716 4.86077 4.88708 4.91310 5.02593 5.03986 5.04715 5.13853 5.16142 5.22730 5.23749 5.31175 5.32685 5.43543 5.44071 5.46693 5.52252 5.56860 6.00948 6.25409 6.46089 7.21463 7.30890 8.07293 8.30471 9.26961 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.027027 B = 0.001714 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.752466 B =16336.767544 C =16694.277666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 C -0.133 4.133 4 C 0.046 3.954 5 O -0.396 6.396 6 C 0.086 3.914 7 H 0.051 0.949 8 C -0.126 4.126 9 C 0.505 3.495 10 O -0.587 6.587 11 N -0.612 5.612 12 C 0.102 3.898 13 C -0.128 4.128 14 C -0.118 4.118 15 C -0.082 4.082 16 H 0.062 0.938 17 C -0.108 4.108 18 C 0.155 3.845 19 N -0.750 5.750 20 C -0.249 4.249 21 H 0.076 0.924 22 C -0.078 4.078 23 N -0.971 5.971 24 Si 0.978 3.022 25 H -0.287 1.287 26 H -0.293 1.293 27 H -0.267 1.267 28 C 0.120 3.880 29 C -0.132 4.132 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.142 0.858 40 H 0.081 0.919 41 H 0.117 0.883 42 H 0.102 0.898 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.049 0.951 47 H 0.064 0.936 48 H 0.031 0.969 49 H 0.011 0.989 50 H 0.372 0.628 51 H 0.252 0.748 52 H 0.062 0.938 53 H 0.072 0.928 54 H 0.097 0.903 55 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 37.336 4.133 37.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.099 4.099 3 C -0.190 4.190 4 C -0.030 4.030 5 O -0.315 6.315 6 C 0.028 3.972 7 H 0.070 0.930 8 C -0.165 4.165 9 C 0.295 3.705 10 O -0.467 6.467 11 N -0.344 5.344 12 C -0.020 4.020 13 C -0.166 4.166 14 C -0.155 4.155 15 C -0.101 4.101 16 H 0.081 0.919 17 C -0.147 4.147 18 C 0.029 3.971 19 N -0.393 5.393 20 C -0.381 4.381 21 H 0.094 0.906 22 C -0.270 4.270 23 N -0.622 5.622 24 Si 0.806 3.194 25 H -0.214 1.214 26 H -0.220 1.220 27 H -0.191 1.191 28 C -0.003 4.003 29 C -0.170 4.170 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.141 0.859 39 H 0.159 0.841 40 H 0.100 0.900 41 H 0.135 0.865 42 H 0.120 0.880 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.049 0.951 49 H 0.029 0.971 50 H 0.204 0.796 51 H 0.060 0.940 52 H 0.081 0.919 53 H 0.090 0.910 54 H 0.115 0.885 55 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.456 36.991 3.703 37.442 hybrid contribution -0.286 -1.660 -0.448 1.743 sum -4.743 35.330 3.255 35.796 Atomic orbital electron populations 1.21881 0.93045 1.01625 1.03055 1.21950 0.96776 0.96996 0.94180 1.21813 1.00941 0.93323 1.02891 1.23444 0.94730 0.88349 0.96526 1.88944 1.56618 1.53500 1.32483 1.22935 0.95511 0.96103 0.82605 0.93048 1.21859 1.02327 0.90568 1.01755 1.21348 0.78302 0.88346 0.82533 1.90704 1.48300 1.77843 1.29873 1.48273 1.39788 1.13148 1.33240 1.22092 0.96114 0.99346 0.84398 1.21914 1.02967 0.93594 0.98139 1.21644 0.98861 0.97756 0.97266 1.21205 1.00234 0.92570 0.96133 0.91945 1.21563 1.01465 0.93827 0.97810 1.20812 0.96611 0.83756 0.95908 1.42645 1.79360 1.02324 1.14923 1.19674 1.35534 0.87051 0.95834 0.90571 1.25644 1.02600 1.00421 0.98352 1.69830 1.52546 1.21566 1.18209 0.85081 0.76980 0.78861 0.78476 1.21440 1.21969 1.19147 1.21381 1.01641 0.81239 0.96023 1.23313 1.03169 0.92894 0.97606 0.90779 0.91881 0.93607 0.92271 0.92025 0.91033 0.93581 0.89343 0.85879 0.84071 0.90026 0.86515 0.87997 0.91644 0.91311 0.91816 0.93247 0.91688 0.95100 0.97134 0.79614 0.93957 0.91919 0.90992 0.88481 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.26 71.98 0.59 -0.76 16 2 C -0.10 -1.07 0.99 -51.19 -0.05 -1.12 16 3 C -0.13 -0.97 8.26 71.98 0.59 -0.38 16 4 C 0.05 0.79 7.04 72.35 0.51 1.30 16 5 O -0.40 -9.38 10.90 -145.44 -1.59 -10.96 16 6 C 0.09 1.52 2.77 31.28 0.09 1.61 16 7 H 0.05 1.15 7.89 -2.39 -0.02 1.13 16 8 C -0.13 -1.77 3.81 29.85 0.11 -1.65 16 9 C 0.50 12.32 7.64 87.66 0.67 12.99 16 10 O -0.59 -20.78 15.08 0.51 0.01 -20.77 16 11 N -0.61 -12.97 2.98 -819.69 -2.44 -15.41 16 12 C 0.10 1.23 6.35 86.36 0.55 1.78 16 13 C -0.13 -1.73 6.08 30.67 0.19 -1.54 16 14 C -0.12 -2.47 4.96 30.62 0.15 -2.32 16 15 C -0.08 -2.16 2.33 -10.85 -0.03 -2.18 16 16 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 17 C -0.11 -3.66 4.80 30.59 0.15 -3.52 16 18 C 0.16 6.46 6.02 86.38 0.52 6.98 16 19 N -0.75 -40.16 5.60 -343.45 -1.92 -42.09 16 20 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 21 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 22 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 23 N -0.97 -61.23 13.06 21.65 0.28 -60.95 16 24 Si 0.98 47.08 29.55 68.60 2.03 49.11 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 28 C 0.12 3.15 5.69 86.23 0.49 3.65 16 29 C -0.13 -1.29 5.69 31.90 0.18 -1.10 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 36 H 0.05 0.85 7.69 -2.39 -0.02 0.83 16 37 H 0.09 1.31 7.69 -2.39 -0.02 1.29 16 38 H 0.12 1.23 7.94 -2.39 -0.02 1.21 16 39 H 0.14 0.96 7.69 -2.39 -0.02 0.94 16 40 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.12 0.63 5.93 -2.39 -0.01 0.61 16 42 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.06 1.50 6.50 -2.39 -0.02 1.48 16 46 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.03 1.24 6.54 -2.39 -0.02 1.22 16 49 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 50 H 0.37 21.21 7.67 -92.71 -0.71 20.49 16 51 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 52 H 0.06 2.02 7.01 -2.39 -0.02 2.00 16 53 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 54 H 0.10 0.64 7.79 -2.39 -0.02 0.62 16 55 H 0.10 0.66 7.86 -2.39 -0.02 0.64 16 Total: -1.00 -79.38 421.13 2.52 -76.85 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.13 Total: 28.28 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 6.02 Total: -4.06 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -4.08 Total: -118.45 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -1.58 Total: -31.74 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -79.38 2.52 -76.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714216699.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.248 kcal (2) G-P(sol) polarization free energy of solvation -79.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds