Wall clock time and date at job start Tue Mar 31 2020 20:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48496 * 109.47191 * 270.00039 * 3 2 1 5 5 H 1.48501 * 109.46981 * 30.00086 * 3 2 1 6 6 H 1.48500 * 109.46794 * 149.99743 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 163.07876 * 7 2 1 9 9 N 1.36931 * 120.00220 * 343.08678 * 7 2 1 10 10 C 1.46925 * 120.63201 * 151.82683 * 9 7 2 11 11 C 1.53198 * 108.89335 * 126.29969 * 10 9 7 12 12 C 1.53350 * 109.14641 * 54.57862 * 11 10 9 13 13 C 1.53000 * 109.41773 * 178.67869 * 12 11 10 14 14 C 1.53002 * 109.46966 * 295.12783 * 13 12 11 15 15 N 1.46503 * 109.47337 * 180.02562 * 14 13 12 16 16 C 1.34774 * 119.99965 * 180.02562 * 15 14 13 17 17 O 1.21282 * 120.00016 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99707 * 179.97438 * 16 15 14 19 19 O 1.42900 * 109.46832 * 179.97438 * 18 16 15 20 20 C 1.42904 * 113.99952 * 179.97438 * 19 18 16 21 21 C 1.52994 * 109.47481 * 270.00450 * 20 19 18 22 22 C 1.53000 * 109.47146 * 179.97438 * 21 20 19 23 23 C 1.52993 * 109.47090 * 59.99913 * 22 21 20 24 24 C 1.53000 * 109.47199 * 299.99760 * 23 22 21 25 25 C 1.52995 * 109.47053 * 149.99893 * 20 19 18 26 26 C 1.53044 * 109.60893 * 298.71132 * 12 11 10 27 27 C 1.46925 * 120.62943 * 331.81086 * 9 7 2 28 28 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.58983 * 246.15688 * 10 9 7 30 30 H 1.08993 * 109.58892 * 6.44125 * 10 9 7 31 31 H 1.08996 * 109.49640 * 174.65737 * 11 10 9 32 32 H 1.09000 * 109.49939 * 294.75884 * 11 10 9 33 33 H 1.08997 * 109.42600 * 58.75344 * 12 11 10 34 34 H 1.09000 * 109.47417 * 55.12332 * 13 12 11 35 35 H 1.08998 * 109.47314 * 175.12869 * 13 12 11 36 36 H 1.09009 * 109.47236 * 300.00016 * 14 13 12 37 37 H 1.08998 * 109.47253 * 59.99408 * 14 13 12 38 38 H 0.96997 * 119.99827 * 359.97438 * 15 14 13 39 39 H 1.09000 * 109.47053 * 299.99915 * 18 16 15 40 40 H 1.08998 * 109.47162 * 60.00027 * 18 16 15 41 41 H 1.09000 * 109.46355 * 30.00677 * 20 19 18 42 42 H 1.08997 * 109.47385 * 300.00033 * 21 20 19 43 43 H 1.09002 * 109.46697 * 59.99931 * 21 20 19 44 44 H 1.09005 * 109.46725 * 299.99684 * 22 21 20 45 45 H 1.08999 * 109.46882 * 180.02562 * 22 21 20 46 46 H 1.09007 * 109.46666 * 180.02562 * 23 22 21 47 47 H 1.09000 * 109.47259 * 60.00663 * 23 22 21 48 48 H 1.08997 * 109.47626 * 300.00086 * 24 23 22 49 49 H 1.09002 * 109.46699 * 180.02562 * 24 23 22 50 50 H 1.08993 * 109.47868 * 300.00948 * 25 20 19 51 51 H 1.09005 * 109.47165 * 60.00716 * 25 20 19 52 52 H 1.08996 * 109.49900 * 301.42445 * 26 12 11 53 53 H 1.08999 * 109.52516 * 181.34285 * 26 12 11 54 54 H 1.08998 * 109.58495 * 353.41108 * 27 9 7 55 55 H 1.09000 * 109.58924 * 113.69864 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3701 -2.3622 0.3460 10 6 1.8140 -3.6529 -0.1980 11 6 2.0708 -4.6187 0.9632 12 6 0.8133 -4.7005 1.8369 13 6 1.0517 -5.6889 2.9802 14 6 1.2430 -7.0947 2.4074 15 7 1.4707 -8.0413 3.5022 16 6 1.6667 -9.3474 3.2339 17 8 1.6540 -9.7393 2.0862 18 6 1.9015 -10.3210 4.3600 19 8 2.0801 -11.6340 3.8250 20 6 2.3113 -12.6384 4.8149 21 6 3.8142 -12.7645 5.0721 22 6 4.0617 -13.8395 6.1324 23 6 3.5149 -15.1798 5.6371 24 6 2.0119 -15.0537 5.3798 25 6 1.7645 -13.9785 4.3190 26 6 0.4985 -3.3188 2.4148 27 6 0.2264 -2.3401 1.2681 28 1 -0.4849 0.8400 0.0004 29 1 1.0402 -4.0609 -0.8482 30 1 2.7330 -3.5129 -0.7669 31 1 2.3089 -5.6065 0.5688 32 1 2.9059 -4.2543 1.5615 33 1 -0.0270 -5.0411 1.2318 34 1 1.9449 -5.3970 3.5325 35 1 0.1921 -5.6835 3.6504 36 1 0.3498 -7.3867 1.8550 37 1 2.1026 -7.1001 1.7372 38 1 1.4812 -7.7278 4.4201 39 1 2.7944 -10.0288 4.9126 40 1 1.0417 -10.3159 5.0299 41 1 1.8064 -12.3599 5.7398 42 1 4.3191 -13.0430 4.1472 43 1 4.2036 -11.8097 5.4255 44 1 3.5569 -13.5605 7.0573 45 1 5.1324 -13.9290 6.3160 46 1 3.6908 -15.9455 6.3927 47 1 4.0197 -15.4587 4.7122 48 1 1.5071 -14.7748 6.3047 49 1 1.6223 -16.0087 5.0274 50 1 0.6939 -13.8888 4.1356 51 1 2.2694 -14.2571 3.3939 52 1 1.3483 -2.9669 2.9996 53 1 -0.3816 -3.3834 3.0546 54 1 0.0994 -1.3343 1.6686 55 1 -0.6773 -2.6386 0.7368 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714328015.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:13 Heat of formation + Delta-G solvation = -118.699787 kcal Electronic energy + Delta-G solvation = -29060.269839 eV Core-core repulsion = 25095.304944 eV Total energy + Delta-G solvation = -3964.964895 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.94659 -39.94032 -39.43224 -37.31270 -36.62495 -35.07702 -33.09613 -31.74281 -31.64922 -31.13187 -30.19848 -28.41344 -26.56813 -24.54943 -23.62456 -23.49079 -23.08739 -22.16574 -21.64713 -20.77746 -20.57050 -18.70005 -18.26441 -17.86243 -17.10911 -16.89906 -16.75064 -16.21804 -16.00627 -15.62681 -15.32725 -15.29275 -15.22374 -14.90807 -14.81078 -14.63664 -14.30774 -14.05517 -13.88571 -13.79705 -13.56538 -13.16554 -13.06351 -12.99948 -12.93543 -12.81950 -12.54000 -12.27619 -12.13625 -12.06274 -11.98073 -11.92770 -11.80639 -11.53155 -11.49657 -11.45994 -11.24287 -11.11455 -10.98203 -10.79180 -10.52416 -10.42067 -10.08817 -8.65997 -7.86867 -5.32420 1.46222 1.47052 1.57375 1.57441 1.82745 2.51536 2.96288 3.27367 3.68780 3.73835 3.78975 3.83973 3.87082 3.93878 4.07353 4.13663 4.18466 4.22739 4.29182 4.30498 4.36364 4.37397 4.44434 4.56444 4.58522 4.59416 4.66829 4.67968 4.75626 4.78667 4.90445 4.95203 5.03682 5.04458 5.06169 5.12227 5.12607 5.23252 5.24147 5.27807 5.31336 5.36497 5.39463 5.40942 5.43148 5.47886 5.51518 5.56994 5.67726 5.82069 6.17048 6.40103 6.58373 7.16171 7.24928 7.88213 8.39906 9.19180 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.038280 B = 0.001459 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.283192 B =19192.156067 C =19334.913224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.967 3.033 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.265 4.265 8 H 0.064 0.936 9 N -0.611 5.611 10 C 0.137 3.863 11 C -0.117 4.117 12 C -0.072 4.072 13 C -0.106 4.106 14 C 0.123 3.877 15 N -0.712 5.712 16 C 0.504 3.496 17 O -0.580 6.580 18 C 0.047 3.953 19 O -0.394 6.394 20 C 0.086 3.914 21 C -0.142 4.142 22 C -0.113 4.113 23 C -0.125 4.125 24 C -0.111 4.111 25 C -0.119 4.119 26 C -0.119 4.119 27 C 0.173 3.827 28 H 0.250 0.750 29 H 0.007 0.993 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.419 0.581 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.055 0.945 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.064 0.936 51 H 0.054 0.946 52 H 0.054 0.946 53 H 0.071 0.929 54 H 0.051 0.949 55 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.723 -28.743 19.971 35.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.395 4.395 8 H 0.081 0.919 9 N -0.335 5.335 10 C 0.011 3.989 11 C -0.156 4.156 12 C -0.091 4.091 13 C -0.144 4.144 14 C -0.001 4.001 15 N -0.366 5.366 16 C 0.291 3.709 17 O -0.459 6.459 18 C -0.032 4.032 19 O -0.313 6.313 20 C 0.029 3.971 21 C -0.180 4.180 22 C -0.151 4.151 23 C -0.162 4.162 24 C -0.149 4.149 25 C -0.157 4.157 26 C -0.158 4.158 27 C 0.048 3.952 28 H 0.059 0.941 29 H 0.025 0.975 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.257 0.743 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.073 0.927 48 H 0.094 0.906 49 H 0.091 0.909 50 H 0.083 0.917 51 H 0.072 0.928 52 H 0.073 0.927 53 H 0.090 0.910 54 H 0.070 0.930 55 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 4.617 -28.935 18.947 34.893 hybrid contribution 0.142 1.513 -0.290 1.547 sum 4.759 -27.422 18.657 33.506 Atomic orbital electron populations 1.70195 1.06701 1.25819 1.55480 1.25805 0.96044 1.01499 1.01277 0.85284 0.78116 0.79527 0.77562 1.21253 1.21661 1.19487 1.19522 0.92780 0.86226 1.41004 0.91876 1.44329 1.36072 1.02174 1.50905 1.21072 0.96791 0.86440 0.94559 1.22027 0.97767 0.98536 0.97292 1.20949 0.97458 0.94467 0.96203 1.21692 1.03643 0.91296 0.97773 1.21339 1.00905 0.88315 0.89493 1.45784 1.72719 1.06505 1.11613 1.20987 0.75896 0.83574 0.90435 1.90726 1.51600 1.78996 1.24559 1.22373 1.04475 0.82918 0.93466 1.88031 1.92887 1.15810 1.34545 1.22365 0.95739 0.87784 0.91208 1.22049 0.95915 1.00207 0.99804 1.21490 1.01618 0.94047 0.97942 1.21606 0.95550 0.97616 1.01447 1.21500 0.96739 0.98079 0.98557 1.21621 1.01030 0.93534 0.99469 1.22005 1.00940 0.95128 0.97763 1.20629 0.87472 0.97839 0.89283 0.94123 0.97496 0.93417 0.90913 0.92386 0.92421 0.90104 0.89489 0.92801 0.92438 0.74305 0.87565 0.87172 0.89903 0.92850 0.91216 0.90649 0.91140 0.90558 0.92655 0.90648 0.90887 0.91728 0.92750 0.92747 0.91017 0.93032 0.99100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.30 11.20 21.65 0.24 -56.06 16 2 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 3 Si 0.97 45.38 29.59 68.60 2.03 47.41 16 4 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.27 -14.97 9.58 84.03 0.81 -14.17 16 8 H 0.06 3.49 7.89 -2.91 -0.02 3.47 16 9 N -0.61 -31.51 2.99 -699.09 -2.09 -33.60 16 10 C 0.14 5.90 6.50 86.36 0.56 6.47 16 11 C -0.12 -3.89 5.16 30.78 0.16 -3.73 16 12 C -0.07 -2.14 2.15 -10.66 -0.02 -2.16 16 13 C -0.11 -2.18 4.80 30.60 0.15 -2.03 16 14 C 0.12 2.72 5.43 86.38 0.47 3.19 16 15 N -0.71 -12.20 5.56 -463.04 -2.57 -14.77 16 16 C 0.50 11.38 7.91 87.66 0.69 12.07 16 17 O -0.58 -20.06 16.50 16.00 0.26 -19.79 16 18 C 0.05 0.67 6.23 71.24 0.44 1.11 16 19 O -0.39 -8.15 9.52 -129.94 -1.24 -9.39 16 20 C 0.09 1.15 2.61 30.59 0.08 1.23 16 21 C -0.14 -1.68 5.54 30.59 0.17 -1.51 16 22 C -0.11 -0.89 5.92 30.59 0.18 -0.71 16 23 C -0.12 -1.01 5.92 30.59 0.18 -0.83 16 24 C -0.11 -0.94 5.93 30.61 0.18 -0.76 16 25 C -0.12 -1.60 5.58 30.61 0.17 -1.43 16 26 C -0.12 -4.22 5.36 30.68 0.16 -4.05 16 27 C 0.17 8.43 5.30 86.36 0.46 8.88 16 28 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.01 0.31 8.14 -2.39 -0.02 0.30 16 30 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 31 H 0.07 2.13 6.52 -2.39 -0.02 2.11 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.06 1.47 6.53 -2.39 -0.02 1.46 16 38 H 0.42 3.79 8.47 -92.71 -0.79 3.01 16 39 H 0.11 0.90 7.87 -2.39 -0.02 0.88 16 40 H 0.11 0.86 8.08 -2.39 -0.02 0.84 16 41 H 0.08 0.72 7.79 -2.39 -0.02 0.70 16 42 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 0.72 7.87 -2.39 -0.02 0.70 16 44 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 45 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 47 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 52 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 53 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 54 H 0.05 2.84 6.06 -2.39 -0.01 2.82 16 55 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 Total: -1.00 -76.77 421.40 1.94 -74.82 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.05 Total: 12.28 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 5.26 Total: -0.91 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -4.42 Total: -104.43 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.97 Total: -29.18 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -76.77 1.94 -74.82 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714328015.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.876 kcal (2) G-P(sol) polarization free energy of solvation -76.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds