Wall clock time and date at job start Tue Mar 31 2020 21:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47107 * 2 1 4 4 C 1.52999 * 109.47087 * 119.99512 * 2 1 3 5 5 C 1.52997 * 109.47355 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47253 * 300.00018 * 5 4 2 7 7 C 1.52999 * 109.46954 * 59.99737 * 6 5 4 8 8 C 1.52997 * 109.47355 * 300.00201 * 7 6 5 9 9 H 1.08996 * 109.46901 * 299.99907 * 8 7 6 10 10 C 1.52999 * 109.47355 * 180.02562 * 8 7 6 11 11 C 1.50699 * 109.47433 * 65.00194 * 10 8 7 12 12 O 1.21284 * 119.99719 * 359.97438 * 11 10 8 13 13 N 1.34777 * 120.00390 * 180.02562 * 11 10 8 14 14 C 1.46494 * 119.99958 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47001 * 179.97438 * 14 13 11 16 16 H 1.09007 * 109.51585 * 59.90253 * 15 14 13 17 17 C 1.53303 * 109.51393 * 180.02562 * 15 14 13 18 18 N 1.47153 * 108.38402 * 172.22759 * 17 15 14 19 19 C 1.36933 * 120.98040 * 129.44642 * 18 17 15 20 20 H 1.08005 * 119.99934 * 206.23092 * 19 18 17 21 21 C 1.38810 * 120.00341 * 26.23037 * 19 18 17 22 22 N 1.31620 * 119.99607 * 16.92607 * 21 19 18 23 23 Si 1.86798 * 120.00237 * 196.92277 * 21 19 18 24 24 H 1.48504 * 109.46975 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46873 * 119.99770 * 23 21 19 26 26 H 1.48504 * 109.47202 * 240.00332 * 23 21 19 27 27 C 1.47153 * 118.03473 * 309.46592 * 18 17 15 28 28 C 1.53296 * 108.38832 * 50.53576 * 27 18 17 29 29 O 1.42959 * 109.22238 * 307.70109 * 28 27 18 30 30 H 1.09002 * 109.46948 * 300.00192 * 1 2 3 31 31 H 1.09002 * 109.46686 * 60.00431 * 1 2 3 32 32 H 1.09006 * 109.46918 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47237 * 179.97438 * 3 2 1 34 34 H 1.09009 * 109.46400 * 299.99614 * 3 2 1 35 35 H 1.08998 * 109.46996 * 59.99435 * 3 2 1 36 36 H 1.08998 * 109.47285 * 59.99867 * 4 2 1 37 37 H 1.09002 * 109.47468 * 299.99977 * 4 2 1 38 38 H 1.08997 * 109.47350 * 180.02562 * 5 4 2 39 39 H 1.09008 * 109.47199 * 59.99746 * 5 4 2 40 40 H 1.08996 * 109.47228 * 299.99875 * 6 5 4 41 41 H 1.09002 * 109.47390 * 179.97438 * 6 5 4 42 42 H 1.08998 * 109.47285 * 60.00508 * 7 6 5 43 43 H 1.09002 * 109.47468 * 180.02562 * 7 6 5 44 44 H 1.09007 * 109.47400 * 184.99820 * 10 8 7 45 45 H 1.09007 * 109.47133 * 305.00149 * 10 8 7 46 46 H 0.96998 * 119.99704 * 0.02562 * 13 11 10 47 47 H 1.08996 * 109.47572 * 300.00171 * 14 13 11 48 48 H 1.09005 * 109.47384 * 60.00074 * 14 13 11 49 49 H 1.08995 * 109.67796 * 291.95154 * 17 15 14 50 50 H 1.08997 * 109.67720 * 52.46740 * 17 15 14 51 51 H 0.97004 * 119.99844 * 180.02562 * 22 21 19 52 52 H 1.09003 * 109.68228 * 170.26408 * 27 18 17 53 53 H 1.09001 * 109.67922 * 290.81251 * 27 18 17 54 54 H 1.09001 * 109.50675 * 67.62128 * 28 27 18 55 55 H 1.08996 * 109.51598 * 187.72135 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5700 -0.7206 1.2497 6 6 4.0806 -1.4416 0.0005 7 6 3.5706 -0.7205 -1.2488 8 6 2.0406 -0.7210 -1.2491 9 1 1.6777 -1.7487 -1.2493 10 6 1.5306 -0.0004 -2.4988 11 6 1.9298 -0.7790 -3.7257 12 8 2.5605 -1.8086 -3.6119 13 7 1.5868 -0.3306 -4.9496 14 6 1.9753 -1.0873 -6.1423 15 6 1.4652 -0.3668 -7.3919 16 1 1.8974 0.6329 -7.4378 17 6 1.8707 -1.1581 -8.6407 18 7 1.2131 -0.5510 -9.8087 19 6 1.9292 -0.2198 -10.9279 20 1 1.5809 0.5691 -11.5781 21 6 3.1030 -0.8979 -11.2267 22 7 3.3603 -2.0532 -10.6510 23 14 4.3173 -0.1708 -12.4458 24 1 3.7977 1.1266 -12.9480 25 1 5.6235 0.0464 -11.7737 26 1 4.4961 -1.1071 -13.5846 27 6 -0.2369 -0.3099 -9.7384 28 6 -0.5398 0.4401 -8.4362 29 8 0.0399 -0.2693 -7.3387 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9563 0.8899 36 1 1.6767 -1.7488 1.2494 37 1 1.6767 -0.2073 2.1393 38 1 3.9333 -1.2348 2.1394 39 1 3.9330 0.3072 1.2498 40 1 3.7176 -2.4694 0.0004 41 1 5.1706 -1.4408 0.0006 42 1 3.9336 0.3073 -1.2487 43 1 3.9339 -1.2343 -2.1387 44 1 0.4442 0.0774 -2.4554 45 1 1.9649 0.9983 -2.5450 46 1 1.0833 0.4934 -5.0406 47 1 3.0616 -1.1652 -6.1854 48 1 1.5410 -2.0860 -6.0965 49 1 2.9527 -1.1170 -8.7660 50 1 1.5523 -2.1954 -8.5374 51 1 4.1808 -2.5269 -10.8595 52 1 -0.5506 0.2928 -10.5907 53 1 -0.7680 -1.2617 -9.7459 54 1 -0.1153 1.4428 -8.4865 55 1 -1.6187 0.5081 -8.2976 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714483674.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:44 Heat of formation + Delta-G solvation = -108.736347 kcal Electronic energy + Delta-G solvation = -30809.648282 eV Core-core repulsion = 26845.115435 eV Total energy + Delta-G solvation = -3964.532847 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -41.45181 -40.35234 -39.60323 -36.46510 -35.79589 -34.35164 -33.31894 -33.22899 -32.40609 -29.41692 -28.75030 -28.11004 -27.23664 -26.24294 -25.06188 -23.55473 -22.82473 -21.92260 -21.59545 -20.92693 -19.04927 -18.92316 -18.08630 -17.51643 -17.12623 -16.87179 -16.35265 -16.16468 -16.01505 -15.72457 -15.51392 -15.31056 -15.06127 -15.00974 -14.77087 -14.59279 -14.49002 -13.92277 -13.89336 -13.59708 -13.36994 -13.15386 -13.03287 -12.76150 -12.70923 -12.65812 -12.51851 -12.43499 -12.23757 -12.18947 -12.07779 -12.06828 -11.88690 -11.85632 -11.56012 -11.32422 -11.09354 -10.96285 -10.83759 -10.72814 -10.58032 -10.47229 -10.04026 -8.77632 -7.93093 -5.40777 1.44453 1.46418 1.57042 1.72711 2.21255 2.47030 2.78575 3.22045 3.48891 3.67155 3.75110 3.80615 3.99518 4.06191 4.09432 4.19308 4.24870 4.27515 4.40268 4.45132 4.47645 4.51011 4.52437 4.58233 4.60149 4.66423 4.67927 4.73824 4.82157 4.85547 4.88826 4.93985 4.97238 5.05819 5.05995 5.11676 5.15904 5.21364 5.23929 5.27399 5.29801 5.33093 5.37413 5.44380 5.48674 5.50805 5.58513 5.60187 5.65106 5.77122 6.24996 6.31385 6.63653 7.03432 7.34293 7.72562 8.26183 9.12901 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018877 B = 0.002257 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.896788 B =12402.147117 C =13301.927151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.055 4.055 3 C -0.147 4.147 4 C -0.107 4.107 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.121 4.121 8 C -0.053 4.053 9 H 0.051 0.949 10 C -0.131 4.131 11 C 0.504 3.496 12 O -0.583 6.583 13 N -0.713 5.713 14 C 0.144 3.856 15 C 0.078 3.922 16 H 0.065 0.935 17 C 0.159 3.841 18 N -0.615 5.615 19 C -0.264 4.264 20 H 0.075 0.925 21 C -0.053 4.053 22 N -0.937 5.937 23 Si 0.971 3.029 24 H -0.262 1.262 25 H -0.289 1.289 26 H -0.293 1.293 27 C 0.101 3.899 28 C 0.057 3.943 29 O -0.389 6.389 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.048 0.952 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.415 0.585 47 H 0.070 0.930 48 H 0.053 0.947 49 H 0.066 0.934 50 H -0.003 1.003 51 H 0.251 0.749 52 H 0.073 0.927 53 H 0.014 0.986 54 H 0.055 0.945 55 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.688 10.059 24.288 26.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.055 4.055 3 C -0.204 4.204 4 C -0.144 4.144 5 C -0.154 4.154 6 C -0.155 4.155 7 C -0.158 4.158 8 C -0.072 4.072 9 H 0.070 0.930 10 C -0.170 4.170 11 C 0.293 3.707 12 O -0.463 6.463 13 N -0.365 5.365 14 C 0.019 3.981 15 C 0.019 3.981 16 H 0.083 0.917 17 C 0.032 3.968 18 N -0.339 5.339 19 C -0.394 4.394 20 H 0.093 0.907 21 C -0.248 4.248 22 N -0.583 5.583 23 Si 0.798 3.202 24 H -0.187 1.187 25 H -0.216 1.216 26 H -0.220 1.220 27 C -0.025 4.025 28 C -0.020 4.020 29 O -0.308 6.308 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.251 0.749 47 H 0.088 0.912 48 H 0.071 0.929 49 H 0.084 0.916 50 H 0.015 0.985 51 H 0.060 0.940 52 H 0.091 0.909 53 H 0.032 0.968 54 H 0.073 0.927 55 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.244 9.170 24.450 26.634 hybrid contribution 0.821 -0.231 -1.549 1.769 sum -4.423 8.939 22.901 24.978 Atomic orbital electron populations 1.21965 0.94054 1.01680 1.02617 1.20501 0.95573 0.95836 0.93589 1.22039 1.01422 0.94498 1.02437 1.21579 0.95369 1.00078 0.97380 1.21569 0.95870 1.01020 0.96972 1.21485 0.99947 0.98960 0.95095 1.21695 0.95412 1.00701 0.97990 1.20826 0.95317 0.98409 0.92685 0.93031 1.21926 1.04376 1.00435 0.90299 1.21483 0.78304 0.85515 0.85436 1.90665 1.41752 1.26716 1.87154 1.45882 1.57582 1.28055 1.04976 1.21011 0.99063 0.95061 0.82958 1.22732 0.82144 0.98908 0.94362 0.91716 1.21087 0.98217 0.92631 0.84855 1.44369 1.03142 1.73114 1.13299 1.19593 1.04756 1.12627 1.02421 0.90711 1.25868 1.02336 0.95513 1.01086 1.70197 1.25977 1.14301 1.47783 0.85161 0.78741 0.78171 0.78099 1.18654 1.21606 1.22042 1.21844 0.84619 0.97771 0.98221 1.23081 0.99200 0.94124 0.85612 1.87788 1.19551 1.77603 1.45874 0.91623 0.91614 0.93437 0.92261 0.91807 0.91879 0.92973 0.90773 0.91762 0.90989 0.93534 0.92361 0.91330 0.93302 0.86646 0.86600 0.74900 0.91177 0.92904 0.91592 0.98467 0.93979 0.90865 0.96792 0.92654 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.13 71.98 0.59 -1.15 16 2 C -0.05 -0.74 0.54 -52.18 -0.03 -0.77 16 3 C -0.15 -1.62 7.43 71.98 0.53 -1.08 16 4 C -0.11 -1.44 4.73 30.59 0.14 -1.30 16 5 C -0.12 -1.66 5.65 30.59 0.17 -1.49 16 6 C -0.12 -2.22 5.92 30.59 0.18 -2.04 16 7 C -0.12 -2.56 4.67 30.59 0.14 -2.42 16 8 C -0.05 -1.01 1.14 -10.80 -0.01 -1.03 16 9 H 0.05 1.25 7.95 -2.39 -0.02 1.23 16 10 C -0.13 -2.31 4.45 29.85 0.13 -2.18 16 11 C 0.50 13.78 7.55 87.66 0.66 14.44 16 12 O -0.58 -21.10 13.96 -3.04 -0.04 -21.14 16 13 N -0.71 -19.17 5.45 -463.07 -2.52 -21.70 16 14 C 0.14 4.99 5.37 86.38 0.46 5.45 16 15 C 0.08 2.91 2.86 30.70 0.09 3.00 16 16 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 17 C 0.16 7.73 4.73 86.36 0.41 8.14 16 18 N -0.61 -30.76 3.05 -697.53 -2.13 -32.89 16 19 C -0.26 -14.31 9.65 84.03 0.81 -13.50 16 20 H 0.08 3.88 7.88 -2.91 -0.02 3.86 16 21 C -0.05 -2.92 4.95 84.86 0.42 -2.50 16 22 N -0.94 -55.69 11.14 21.65 0.24 -55.45 16 23 Si 0.97 44.35 29.59 68.60 2.03 46.38 16 24 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 26 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 27 C 0.10 4.05 6.73 86.35 0.58 4.63 16 28 C 0.06 1.79 6.99 72.08 0.50 2.30 16 29 O -0.39 -13.50 10.14 -148.98 -1.51 -15.01 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.69 6.32 -2.39 -0.02 0.67 16 32 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.06 0.70 4.81 -2.39 -0.01 0.69 16 34 H 0.06 0.62 6.55 -2.38 -0.02 0.60 16 35 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.92 6.43 -2.38 -0.02 0.90 16 40 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 1.27 6.43 -2.39 -0.02 1.25 16 43 H 0.05 1.39 5.95 -2.39 -0.01 1.38 16 44 H 0.12 1.60 6.18 -2.38 -0.01 1.58 16 45 H 0.12 1.55 6.71 -2.38 -0.02 1.53 16 46 H 0.41 8.85 8.36 -92.71 -0.77 8.08 16 47 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 48 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 49 H 0.07 3.59 6.14 -2.39 -0.01 3.58 16 50 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 51 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 52 H 0.07 2.74 7.96 -2.39 -0.02 2.72 16 53 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 54 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 55 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -69.29 404.25 1.95 -67.34 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.09 Total: 23.96 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 5.79 Total: 8.52 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -4.41 Total: -110.04 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -1.55 Total: -36.16 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -69.29 1.95 -67.34 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714483674.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.397 kcal (2) G-P(sol) polarization free energy of solvation -69.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds