Wall clock time and date at job start Tue Mar 31 2020 21:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 120.00584 * 2 1 4 4 H 1.07996 * 119.99970 * 178.35669 * 3 2 1 5 5 C 1.38805 * 119.99529 * 358.35694 * 3 2 1 6 6 N 1.31619 * 120.00499 * 33.22249 * 5 3 2 7 7 Si 1.86799 * 120.00038 * 213.22044 * 5 3 2 8 8 H 1.48504 * 109.47062 * 94.99733 * 7 5 3 9 9 H 1.48497 * 109.47489 * 214.99860 * 7 5 3 10 10 H 1.48503 * 109.47303 * 335.00191 * 7 5 3 11 11 C 1.46504 * 119.99908 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47197 * 270.00306 * 11 2 1 13 13 C 1.52998 * 109.47334 * 179.97438 * 12 11 2 14 14 C 1.53046 * 109.46104 * 184.99802 * 13 12 11 15 15 C 1.53196 * 109.31242 * 178.62931 * 14 13 12 16 16 N 1.46921 * 108.77241 * 54.63412 * 15 14 13 17 17 C 1.34785 * 120.62804 * 126.37242 * 16 15 14 18 18 O 1.21277 * 119.99721 * 185.98924 * 17 16 15 19 19 C 1.50695 * 119.99799 * 5.99354 * 17 16 15 20 20 C 1.53003 * 109.52053 * 291.72552 * 19 17 16 21 21 C 1.53309 * 109.51030 * 51.88664 * 19 17 16 22 22 C 1.53175 * 108.96646 * 62.97104 * 21 19 17 23 23 C 1.53090 * 109.21417 * 56.95620 * 22 21 19 24 24 O 1.42902 * 109.41305 * 302.35729 * 23 22 21 25 25 C 1.42900 * 114.09784 * 61.16198 * 24 23 22 26 26 C 1.46926 * 118.74197 * 306.64119 * 16 15 14 27 27 C 1.52754 * 109.00942 * 53.31277 * 26 16 15 28 28 H 1.09002 * 109.46958 * 274.41418 * 1 2 3 29 29 H 1.08997 * 109.47070 * 34.41114 * 1 2 3 30 30 H 1.08995 * 109.47292 * 154.41161 * 1 2 3 31 31 H 0.97000 * 120.00560 * 179.97438 * 6 5 3 32 32 H 1.08995 * 109.47405 * 149.99967 * 11 2 1 33 33 H 1.09007 * 109.47254 * 29.99393 * 11 2 1 34 34 H 1.09005 * 109.47235 * 59.99513 * 12 11 2 35 35 H 1.08999 * 109.47059 * 299.99723 * 12 11 2 36 36 H 1.08998 * 109.45921 * 304.96989 * 13 12 11 37 37 H 1.08994 * 109.49424 * 58.67459 * 14 13 12 38 38 H 1.09003 * 109.52119 * 298.59683 * 14 13 12 39 39 H 1.08994 * 109.58216 * 294.84254 * 15 14 13 40 40 H 1.09001 * 109.58366 * 174.42273 * 15 14 13 41 41 H 1.09002 * 109.47058 * 303.16479 * 20 19 17 42 42 H 1.08995 * 109.47466 * 63.17010 * 20 19 17 43 43 H 1.09001 * 109.47046 * 183.17435 * 20 19 17 44 44 H 1.09006 * 109.62639 * 303.09615 * 21 19 17 45 45 H 1.09004 * 109.52891 * 182.79294 * 21 19 17 46 46 H 1.09003 * 109.52427 * 297.01546 * 22 21 19 47 47 H 1.09000 * 109.51954 * 176.89001 * 22 21 19 48 48 H 1.08994 * 109.48242 * 62.34139 * 23 22 21 49 49 H 1.09000 * 109.47886 * 182.36519 * 23 22 21 50 50 H 1.09005 * 109.48482 * 58.82085 * 25 24 23 51 51 H 1.09004 * 109.48300 * 178.84701 * 25 24 23 52 52 H 1.08997 * 109.58845 * 173.14805 * 26 16 15 53 53 H 1.09002 * 109.58535 * 293.57390 * 26 16 15 54 54 H 1.08998 * 109.56836 * 185.55120 * 27 26 16 55 55 H 1.09006 * 109.38696 * 65.51128 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.2294 1.1859 0.0268 5 6 1.4562 2.3877 -0.0345 6 7 0.2862 2.4897 0.5597 7 14 2.1833 3.8605 -0.9242 8 1 1.6455 3.9183 -2.3072 9 1 1.8208 5.1050 -0.1997 10 1 3.6617 3.7290 -0.9731 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7111 1.4417 13 6 3.2168 -3.0365 1.4412 14 6 3.3628 -3.5415 2.8785 15 6 4.0984 -4.8853 2.8711 16 7 5.3717 -4.7233 2.1562 17 6 6.5346 -5.0843 2.7342 18 8 7.5867 -4.8464 2.1800 19 6 6.5272 -5.7834 4.0692 20 6 6.0506 -4.8131 5.1519 21 6 5.5835 -6.9902 4.0099 22 6 6.1160 -7.9884 2.9773 23 6 7.5461 -8.3861 3.3518 24 8 8.3625 -7.2152 3.4194 25 6 7.9415 -6.2663 4.4015 26 6 5.3539 -4.1549 0.8014 27 6 4.6038 -2.8246 0.8298 28 1 -0.3633 0.0791 1.0246 29 1 -0.3633 0.8478 -0.5807 30 1 -0.3633 -0.9268 -0.4438 31 1 -0.1983 3.3297 0.5360 32 1 3.1499 -1.1383 -0.5143 33 1 1.6083 -2.0283 -0.5147 34 1 1.4999 -1.8416 1.9555 35 1 3.0415 -0.9518 1.9559 36 1 2.6687 -3.7716 0.8519 37 1 2.3750 -3.6699 3.3210 38 1 3.9319 -2.8184 3.4627 39 1 3.4878 -5.6332 2.3654 40 1 4.2924 -5.2012 3.8961 41 1 6.6906 -3.9308 5.1564 42 1 5.0226 -4.5152 4.9458 43 1 6.0992 -5.3020 6.1249 44 1 4.5861 -6.6610 3.7183 45 1 5.5397 -7.4669 4.9892 46 1 6.1129 -7.5272 1.9896 47 1 5.4821 -8.8750 2.9673 48 1 7.5429 -8.8835 4.3217 49 1 7.9443 -9.0640 2.5969 50 1 7.9434 -6.7360 5.3852 51 1 8.6248 -5.4170 4.4029 52 1 6.3761 -3.9892 0.4612 53 1 4.8479 -4.8422 0.1234 54 1 4.4992 -2.4427 -0.1857 55 1 5.1613 -2.1076 1.4325 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715484684.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:31 Heat of formation + Delta-G solvation = -71.513501 kcal Electronic energy + Delta-G solvation = -31518.067961 eV Core-core repulsion = 27555.149217 eV Total energy + Delta-G solvation = -3962.918744 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 6.12 seconds Orbital eigenvalues (eV) -42.20387 -39.87551 -38.67598 -37.53584 -36.16819 -34.84045 -33.15240 -33.05424 -32.00619 -30.21236 -27.97201 -27.93109 -26.80750 -26.18981 -24.83832 -24.10257 -23.24773 -22.51320 -21.72075 -21.02902 -19.72075 -18.74455 -17.65470 -17.42748 -17.11007 -16.82937 -16.35877 -16.30527 -15.83172 -15.71271 -15.58803 -15.40335 -15.25834 -15.06761 -14.76830 -14.48678 -14.17400 -14.03831 -13.83369 -13.61795 -13.48570 -13.21869 -13.13538 -13.05088 -12.86565 -12.82536 -12.70787 -12.56240 -12.40741 -12.15304 -12.08951 -12.05161 -11.93189 -11.69281 -11.57358 -11.54694 -11.44380 -11.16332 -11.09423 -10.63404 -10.38103 -10.24499 -9.60853 -8.94540 -7.96475 -5.10885 1.43565 1.48049 1.55348 1.67279 2.01772 2.51605 2.99370 3.16282 3.35619 3.57099 3.64631 3.77041 3.80302 3.83521 3.93748 3.98388 4.10232 4.13768 4.24021 4.30896 4.39153 4.44882 4.46926 4.50474 4.56833 4.66364 4.69553 4.72038 4.74598 4.77518 4.81154 4.83107 4.85666 4.90311 4.91418 4.98703 5.04347 5.07174 5.10364 5.17014 5.18492 5.23158 5.28835 5.31540 5.38583 5.51706 5.57939 5.62028 5.64891 5.73240 6.25657 6.32602 6.46232 7.12260 7.22673 7.91086 8.30432 9.13107 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.024015 B = 0.002276 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.650421 B =12298.460095 C =12610.762589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.626 5.626 3 C -0.262 4.262 4 H 0.072 0.928 5 C -0.049 4.049 6 N -0.923 5.923 7 Si 0.943 3.057 8 H -0.288 1.288 9 H -0.298 1.298 10 H -0.273 1.273 11 C 0.149 3.851 12 C -0.118 4.118 13 C -0.073 4.073 14 C -0.128 4.128 15 C 0.088 3.912 16 N -0.607 5.607 17 C 0.522 3.478 18 O -0.581 6.581 19 C -0.112 4.112 20 C -0.151 4.151 21 C -0.127 4.127 22 C -0.156 4.156 23 C 0.049 3.951 24 O -0.402 6.402 25 C 0.084 3.916 26 C 0.116 3.884 27 C -0.122 4.122 28 H -0.011 1.011 29 H 0.035 0.965 30 H 0.034 0.966 31 H 0.249 0.751 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.028 0.972 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.090 0.910 40 H 0.127 0.873 41 H 0.049 0.951 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.042 0.958 47 H 0.102 0.898 48 H 0.073 0.927 49 H 0.092 0.908 50 H 0.086 0.914 51 H 0.076 0.924 52 H 0.065 0.935 53 H 0.083 0.917 54 H 0.075 0.925 55 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.037 -26.586 10.804 29.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.349 5.349 3 C -0.391 4.391 4 H 0.090 0.910 5 C -0.245 4.245 6 N -0.570 5.570 7 Si 0.772 3.228 8 H -0.216 1.216 9 H -0.225 1.225 10 H -0.197 1.197 11 C 0.023 3.977 12 C -0.158 4.158 13 C -0.092 4.092 14 C -0.166 4.166 15 C -0.033 4.033 16 N -0.339 5.339 17 C 0.312 3.688 18 O -0.461 6.461 19 C -0.115 4.115 20 C -0.208 4.208 21 C -0.164 4.164 22 C -0.193 4.193 23 C -0.027 4.027 24 O -0.321 6.321 25 C 0.007 3.993 26 C -0.007 4.007 27 C -0.161 4.161 28 H 0.008 0.992 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.144 0.856 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.061 0.939 47 H 0.120 0.880 48 H 0.091 0.909 49 H 0.110 0.890 50 H 0.104 0.896 51 H 0.094 0.906 52 H 0.084 0.916 53 H 0.101 0.899 54 H 0.094 0.906 55 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.647 -26.315 10.385 29.582 hybrid contribution 0.144 1.712 -0.510 1.792 sum 8.791 -24.603 9.875 27.930 Atomic orbital electron populations 1.20766 0.82782 0.97227 0.97188 1.44452 1.02306 1.02122 1.86060 1.19437 0.90980 0.84751 1.43925 0.91002 1.25336 0.97646 0.99795 1.01693 1.70421 1.18019 1.25919 1.42623 0.85597 0.78373 0.79492 0.79378 1.21554 1.22490 1.19745 1.21050 0.95443 0.86090 0.95076 1.22053 0.98794 0.95983 0.98970 1.21042 0.94696 0.96488 0.96960 1.22000 1.01506 0.96743 0.96398 1.22635 0.83517 0.97544 0.99558 1.48146 1.07116 1.62154 1.16520 1.20962 0.82723 0.77740 0.87411 1.90675 1.32488 1.56766 1.66141 1.21561 0.99691 0.97658 0.92587 1.22094 1.02391 0.98138 0.98152 1.22240 0.99079 0.93364 1.01719 1.22190 0.97538 1.00864 0.98738 1.22804 0.90587 0.86982 1.02330 1.88018 1.53573 1.30978 1.59565 1.22482 0.92859 0.92228 0.91747 1.21429 1.00911 0.94691 0.83626 1.21838 0.96080 0.96434 1.01718 0.99245 0.94643 0.94716 0.94137 0.93590 0.92326 0.93396 0.95356 0.89522 0.88958 0.92981 0.89143 0.85614 0.93232 0.89732 0.88207 0.87977 0.87719 0.93919 0.87982 0.90897 0.89022 0.89576 0.90580 0.91605 0.89888 0.90638 0.94044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.20 9.23 127.77 1.18 9.38 16 2 N -0.63 -31.45 2.93 -726.95 -2.13 -33.58 16 3 C -0.26 -14.65 9.65 84.03 0.81 -13.83 16 4 H 0.07 3.99 8.01 -2.91 -0.02 3.97 16 5 C -0.05 -2.82 4.84 84.86 0.41 -2.41 16 6 N -0.92 -55.21 10.80 21.65 0.23 -54.98 16 7 Si 0.94 45.79 29.66 68.60 2.03 47.82 16 8 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 9 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 10 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 11 C 0.15 5.74 5.46 86.38 0.47 6.21 16 12 C -0.12 -3.95 5.01 30.59 0.15 -3.80 16 13 C -0.07 -1.72 2.15 -10.76 -0.02 -1.75 16 14 C -0.13 -2.39 5.34 30.68 0.16 -2.23 16 15 C 0.09 1.25 4.03 86.36 0.35 1.60 16 16 N -0.61 -12.80 2.96 -819.76 -2.43 -15.23 16 17 C 0.52 12.87 5.20 87.65 0.46 13.32 16 18 O -0.58 -20.17 14.94 9.15 0.14 -20.03 16 19 C -0.11 -1.77 0.50 -52.79 -0.03 -1.80 16 20 C -0.15 -1.80 8.22 71.98 0.59 -1.20 16 21 C -0.13 -1.24 4.43 30.76 0.14 -1.10 16 22 C -0.16 -1.92 5.87 30.68 0.18 -1.74 16 23 C 0.05 0.71 6.84 72.01 0.49 1.20 16 24 O -0.40 -9.25 10.03 -136.81 -1.37 -10.63 16 25 C 0.08 1.53 5.07 72.01 0.37 1.89 16 26 C 0.12 2.74 6.41 86.22 0.55 3.29 16 27 C -0.12 -3.16 5.13 30.53 0.16 -3.00 16 28 H -0.01 -0.57 8.03 -2.39 -0.02 -0.59 16 29 H 0.03 1.94 6.18 -2.39 -0.01 1.92 16 30 H 0.03 1.43 7.84 -2.39 -0.02 1.42 16 31 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 32 H 0.05 1.77 6.43 -2.39 -0.02 1.75 16 33 H 0.06 1.99 7.86 -2.38 -0.02 1.97 16 34 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 0.96 7.97 -2.39 -0.02 0.94 16 40 H 0.13 1.24 2.52 -2.39 -0.01 1.23 16 41 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 0.88 5.12 -2.39 -0.01 0.87 16 43 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.10 0.77 4.29 -2.38 -0.01 0.76 16 45 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 46 H 0.04 0.78 7.39 -2.39 -0.02 0.76 16 47 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 51 H 0.08 1.69 7.94 -2.39 -0.02 1.67 16 52 H 0.07 1.88 7.00 -2.39 -0.02 1.86 16 53 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 54 H 0.08 2.01 6.50 -2.39 -0.02 1.99 16 55 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -75.85 401.44 3.74 -72.10 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.85 Total: 10.49 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 6.42 Total: 4.04 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -4.33 Total: -103.78 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -1.24 Total: -30.66 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -75.85 3.74 -72.10 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715484684.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.589 kcal (2) G-P(sol) polarization free energy of solvation -75.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.12 seconds