Wall clock time and date at job start Tue Mar 31 2020 21:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47259 * 2 1 4 4 C 1.53003 * 109.46812 * 120.00055 * 2 1 3 5 5 C 1.53004 * 109.47146 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47008 * 299.99769 * 5 4 2 7 7 C 1.52995 * 109.46881 * 179.97438 * 6 5 4 8 8 C 1.50709 * 109.46648 * 174.99930 * 7 6 5 9 9 O 1.21278 * 120.00339 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99503 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99587 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46866 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.70720 * 59.84702 * 12 11 10 14 14 C 1.53716 * 109.74353 * 180.61348 * 12 11 10 15 15 O 1.42961 * 109.14524 * 172.16545 * 14 12 11 16 16 C 1.42968 * 114.16871 * 297.28619 * 15 14 12 17 17 C 1.53296 * 109.21892 * 62.57833 * 16 15 14 18 18 N 1.47149 * 109.68040 * 299.30594 * 12 11 10 19 19 C 1.36932 * 120.98612 * 9.76524 * 18 12 11 20 20 H 1.08005 * 119.99421 * 328.63572 * 19 18 12 21 21 C 1.38808 * 120.00349 * 148.62805 * 19 18 12 22 22 N 1.31620 * 119.99767 * 349.27659 * 21 19 18 23 23 Si 1.86797 * 119.99965 * 169.26778 * 21 19 18 24 24 H 1.48507 * 109.47087 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.47588 * 300.00562 * 23 21 19 26 26 H 1.48504 * 109.47007 * 60.01017 * 23 21 19 27 27 C 1.53000 * 109.47142 * 59.99792 * 6 5 4 28 28 C 1.53001 * 109.47117 * 239.99492 * 2 1 3 29 29 H 1.08994 * 109.47149 * 300.00535 * 1 2 3 30 30 H 1.08997 * 109.47107 * 60.00488 * 1 2 3 31 31 H 1.09001 * 109.46896 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46873 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46663 * 299.99784 * 3 2 1 34 34 H 1.09008 * 109.47248 * 59.99596 * 3 2 1 35 35 H 1.08991 * 109.47541 * 59.99615 * 4 2 1 36 36 H 1.09008 * 109.46839 * 299.99880 * 4 2 1 37 37 H 1.08997 * 109.47440 * 179.97438 * 5 4 2 38 38 H 1.09001 * 109.46867 * 59.99432 * 5 4 2 39 39 H 1.09000 * 109.46695 * 299.99989 * 6 5 4 40 40 H 1.08996 * 109.47643 * 55.00530 * 7 6 5 41 41 H 1.08997 * 109.47425 * 294.99723 * 7 6 5 42 42 H 0.96998 * 120.00393 * 359.97438 * 10 8 7 43 43 H 1.09002 * 109.47350 * 59.99870 * 11 10 8 44 44 H 1.08998 * 109.47179 * 299.99291 * 11 10 8 45 45 H 1.08999 * 109.65757 * 52.20130 * 14 12 11 46 46 H 1.08997 * 109.44441 * 291.99761 * 14 12 11 47 47 H 1.08997 * 109.50880 * 302.66068 * 16 15 14 48 48 H 1.08991 * 109.55564 * 182.53129 * 16 15 14 49 49 H 1.08997 * 109.68379 * 187.97423 * 17 16 15 50 50 H 1.09002 * 109.70865 * 67.44248 * 17 16 15 51 51 H 0.96998 * 119.99573 * 179.97438 * 22 21 19 52 52 H 1.09001 * 109.47344 * 59.99962 * 27 6 5 53 53 H 1.09001 * 109.47309 * 180.02562 * 27 6 5 54 54 H 1.09001 * 109.47387 * 299.99882 * 28 2 1 55 55 H 1.09000 * 109.46886 * 60.00499 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7208 1.2497 6 6 4.0805 -1.4417 0.0005 7 6 5.6105 -1.4406 0.0006 8 6 6.1134 -2.2553 -1.1633 9 8 5.3257 -2.7850 -1.9181 10 7 7.4386 -2.3961 -1.3646 11 6 7.9275 -3.1876 -2.4963 12 6 9.4575 -3.1866 -2.4962 13 1 9.8253 -3.6179 -1.5651 14 6 9.9774 -4.0029 -3.6904 15 8 11.3950 -3.8440 -3.7854 16 6 11.8179 -2.5020 -4.0386 17 6 11.3913 -1.6091 -2.8679 18 7 9.9522 -1.8075 -2.6331 19 6 9.0996 -0.7401 -2.5391 20 1 8.0739 -0.8383 -2.8627 21 6 9.5536 0.4679 -2.0279 22 7 10.7298 0.5337 -1.4409 23 14 8.4952 2.0002 -2.1732 24 1 9.2017 3.1504 -1.5539 25 1 8.2390 2.2909 -3.6067 26 1 7.2037 1.7779 -1.4746 27 6 3.5706 -0.7205 -1.2488 28 6 2.0400 -0.7214 -1.2492 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7488 1.2494 36 1 1.6766 -0.2074 2.1393 37 1 3.9333 -1.2342 2.1399 38 1 3.9329 0.3070 1.2498 39 1 3.7175 -2.4695 0.0004 40 1 5.9741 -1.8747 0.9319 41 1 5.9731 -0.4167 -0.0890 42 1 8.0686 -1.9727 -0.7607 43 1 7.5643 -2.7529 -3.4276 44 1 7.5645 -4.2115 -2.4074 45 1 9.5090 -3.6484 -4.6086 46 1 9.7383 -5.0559 -3.5418 47 1 11.3562 -2.1422 -4.9580 48 1 12.9027 -2.4745 -4.1410 49 1 11.5825 -0.5646 -3.1141 50 1 11.9504 -1.8836 -1.9734 51 1 11.0471 1.3779 -1.0840 52 1 3.9335 0.3073 -1.2486 53 1 3.9339 -1.2344 -2.1388 54 1 1.6767 -1.7491 -1.2491 55 1 1.6767 -0.2075 -2.1392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717142322.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:57 Heat of formation + Delta-G solvation = -102.911985 kcal Electronic energy + Delta-G solvation = -31727.331897 eV Core-core repulsion = 27763.051613 eV Total energy + Delta-G solvation = -3964.280284 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.20751 -40.31736 -39.61267 -36.96195 -35.36167 -35.02013 -33.27377 -32.17020 -31.64886 -30.22891 -28.96098 -28.18408 -27.12837 -25.36986 -25.16683 -23.63534 -23.29997 -21.70732 -21.42028 -20.81873 -19.33967 -18.70194 -17.62795 -17.54445 -17.20379 -16.44627 -16.35162 -16.22755 -16.12299 -15.71911 -15.65575 -15.42039 -15.08822 -14.81878 -14.76822 -14.60599 -14.35602 -14.19825 -13.58754 -13.50475 -13.16938 -13.11698 -12.92003 -12.76544 -12.72445 -12.67385 -12.62040 -12.46330 -12.29200 -12.16676 -12.15288 -12.00537 -11.85249 -11.78707 -11.63668 -11.31088 -11.12520 -11.01464 -10.84857 -10.70743 -10.56567 -10.39225 -9.76329 -8.61351 -7.86286 -5.37479 1.41266 1.46550 1.50223 1.82123 2.41023 2.49595 3.03253 3.29889 3.44826 3.70736 3.75428 3.82335 3.97996 4.05003 4.12183 4.21495 4.24383 4.31460 4.40340 4.47321 4.49931 4.53484 4.60470 4.63761 4.64284 4.65271 4.66535 4.73798 4.76324 4.80823 4.85751 4.87375 4.98828 5.00466 5.07263 5.11352 5.11606 5.15012 5.22004 5.25949 5.27928 5.31015 5.31915 5.49520 5.53180 5.59299 5.62800 5.67524 5.69910 5.74778 6.29212 6.37746 6.78641 7.11443 7.43788 7.77052 8.33550 9.17885 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015173 B = 0.003231 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.929312 B = 8663.453983 C = 9831.830794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.066 4.066 3 C -0.145 4.145 4 C -0.102 4.102 5 C -0.114 4.114 6 C -0.059 4.059 7 C -0.135 4.135 8 C 0.505 3.495 9 O -0.585 6.585 10 N -0.701 5.701 11 C 0.144 3.856 12 C 0.126 3.874 13 H 0.037 0.963 14 C 0.057 3.943 15 O -0.398 6.398 16 C 0.046 3.954 17 C 0.149 3.851 18 N -0.605 5.605 19 C -0.241 4.241 20 H 0.068 0.932 21 C -0.030 4.030 22 N -0.926 5.926 23 Si 0.942 3.058 24 H -0.295 1.295 25 H -0.291 1.291 26 H -0.270 1.270 27 C -0.120 4.120 28 C -0.100 4.100 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.410 0.590 43 H 0.046 0.954 44 H 0.077 0.923 45 H 0.048 0.952 46 H 0.117 0.883 47 H 0.042 0.958 48 H 0.104 0.896 49 H 0.066 0.934 50 H 0.007 0.993 51 H 0.250 0.750 52 H 0.049 0.951 53 H 0.051 0.949 54 H 0.057 0.943 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.460 -3.163 4.683 14.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.066 4.066 3 C -0.202 4.202 4 C -0.140 4.140 5 C -0.152 4.152 6 C -0.078 4.078 7 C -0.175 4.175 8 C 0.293 3.707 9 O -0.467 6.467 10 N -0.351 5.351 11 C 0.019 3.981 12 C 0.020 3.980 13 H 0.054 0.946 14 C -0.021 4.021 15 O -0.316 6.316 16 C -0.032 4.032 17 C 0.024 3.976 18 N -0.331 5.331 19 C -0.371 4.371 20 H 0.085 0.915 21 C -0.227 4.227 22 N -0.572 5.572 23 Si 0.771 3.229 24 H -0.221 1.221 25 H -0.218 1.218 26 H -0.195 1.195 27 C -0.158 4.158 28 C -0.138 4.138 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.129 0.871 41 H 0.104 0.896 42 H 0.247 0.753 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.066 0.934 46 H 0.134 0.866 47 H 0.061 0.939 48 H 0.122 0.878 49 H 0.084 0.916 50 H 0.025 0.975 51 H 0.059 0.941 52 H 0.068 0.932 53 H 0.069 0.931 54 H 0.076 0.924 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.793 -3.548 4.249 14.862 hybrid contribution 0.240 1.605 -0.076 1.624 sum -13.553 -1.943 4.173 14.314 Atomic orbital electron populations 1.21828 0.93733 1.01895 1.01990 1.20559 0.95796 0.95269 0.94933 1.21972 1.01015 0.95503 1.01726 1.21550 0.94655 1.00520 0.97240 1.21640 0.96265 1.00663 0.96609 1.20796 0.91569 0.99888 0.95528 1.21786 0.97989 1.00573 0.97170 1.21075 0.81923 0.80758 0.86899 1.90582 1.55912 1.50833 1.49325 1.46117 1.06999 1.51976 1.30032 1.21041 0.92631 0.94996 0.89430 1.21631 0.92366 0.86909 0.97094 0.94557 1.23066 0.81272 1.00840 0.96948 1.87801 1.22639 1.28230 1.92948 1.23214 1.00009 0.82455 0.97489 1.21239 0.84046 0.98507 0.93856 1.44297 1.04158 1.00515 1.84103 1.19225 0.94208 0.89813 1.33892 0.91473 1.25587 0.98009 1.00797 0.98263 1.70089 1.20534 1.25292 1.41296 0.85747 0.79181 0.80618 0.77364 1.22133 1.21819 1.19526 1.21685 0.96356 0.99385 0.98328 1.21528 0.94523 1.00137 0.97584 0.91801 0.92827 0.92538 0.93088 0.93150 0.91805 0.91895 0.90713 0.90759 0.91783 0.91558 0.87132 0.89597 0.75319 0.93585 0.90530 0.93385 0.86550 0.93948 0.87762 0.91600 0.97513 0.94077 0.93205 0.93060 0.92423 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.47 71.98 0.61 -1.55 16 2 C -0.07 -1.25 0.77 -52.18 -0.04 -1.29 16 3 C -0.15 -2.83 7.78 71.98 0.56 -2.27 16 4 C -0.10 -1.83 4.73 30.60 0.14 -1.68 16 5 C -0.11 -2.32 4.93 30.59 0.15 -2.17 16 6 C -0.06 -1.53 1.84 -10.80 -0.02 -1.55 16 7 C -0.14 -3.87 5.17 29.85 0.15 -3.71 16 8 C 0.51 17.91 7.55 87.66 0.66 18.57 16 9 O -0.58 -23.49 13.97 -3.02 -0.04 -23.53 16 10 N -0.70 -25.62 3.78 -463.04 -1.75 -27.37 16 11 C 0.14 5.17 4.46 86.38 0.38 5.55 16 12 C 0.13 4.78 3.23 45.11 0.15 4.93 16 13 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 14 C 0.06 1.90 6.31 72.22 0.46 2.36 16 15 O -0.40 -14.63 10.74 -148.98 -1.60 -16.23 16 16 C 0.05 1.71 6.99 72.08 0.50 2.22 16 17 C 0.15 6.77 5.37 86.35 0.46 7.23 16 18 N -0.60 -27.53 3.03 -672.94 -2.04 -29.56 16 19 C -0.24 -11.81 7.06 84.03 0.59 -11.22 16 20 H 0.07 3.36 5.82 -2.91 -0.02 3.34 16 21 C -0.03 -1.52 5.06 84.86 0.43 -1.09 16 22 N -0.93 -50.08 11.13 21.65 0.24 -49.84 16 23 Si 0.94 42.34 29.57 68.60 2.03 44.36 16 24 H -0.30 -13.46 7.11 99.48 0.71 -12.76 16 25 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 27 C -0.12 -3.44 4.67 30.61 0.14 -3.30 16 28 C -0.10 -2.36 4.74 30.61 0.14 -2.22 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 1.13 4.80 -2.39 -0.01 1.12 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.34 6.43 -2.39 -0.02 1.33 16 39 H 0.07 1.84 7.95 -2.39 -0.02 1.82 16 40 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.41 15.81 7.32 -92.71 -0.68 15.14 16 43 H 0.05 1.84 7.56 -2.39 -0.02 1.82 16 44 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 47 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 49 H 0.07 3.34 6.32 -2.39 -0.02 3.32 16 50 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 51 H 0.25 13.36 8.31 -92.71 -0.77 12.59 16 52 H 0.05 1.47 6.43 -2.39 -0.02 1.46 16 53 H 0.05 1.80 5.95 -2.39 -0.01 1.79 16 54 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 55 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -58.92 404.23 2.50 -56.42 By element: Atomic # 1 Polarization: 36.77 SS G_CDS: 0.18 Total: 36.94 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 5.49 Total: 8.80 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -3.55 Total: -106.77 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -1.64 Total: -39.76 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -58.92 2.50 -56.42 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717142322.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.490 kcal (2) G-P(sol) polarization free energy of solvation -58.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds