Wall clock time and date at job start Tue Mar 31 2020 21:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 112.90754 * 2 1 4 4 C 1.53781 * 113.61225 * 228.75325 * 2 1 3 5 5 C 1.53782 * 87.07978 * 270.88120 * 4 2 1 6 6 C 1.53780 * 87.08152 * 334.56692 * 5 4 2 7 7 H 1.09000 * 113.61070 * 140.06556 * 6 5 4 8 8 C 1.50694 * 113.61244 * 270.88491 * 6 5 4 9 9 O 1.21276 * 120.00455 * 22.08965 * 8 6 5 10 10 N 1.34781 * 119.99561 * 201.81367 * 8 6 5 11 11 C 1.46926 * 120.63393 * 359.71423 * 10 8 6 12 12 C 1.52754 * 109.01402 * 233.58862 * 11 10 8 13 13 C 1.53041 * 109.38160 * 305.59044 * 12 11 10 14 14 O 1.42905 * 109.45983 * 181.25962 * 13 12 11 15 15 C 1.42901 * 113.99583 * 89.93063 * 14 13 12 16 16 C 1.53006 * 109.46798 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47167 * 179.97438 * 16 15 14 18 18 N 1.46507 * 109.47152 * 180.02562 * 17 16 15 19 19 C 1.36936 * 119.99872 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99895 * 0.02562 * 19 18 17 21 21 C 1.38809 * 119.99791 * 179.97438 * 19 18 17 22 22 N 1.31616 * 120.00202 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00151 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46706 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47226 * 119.99511 * 23 21 19 26 26 H 1.48498 * 109.47129 * 240.00097 * 23 21 19 27 27 C 1.53037 * 109.53898 * 61.23976 * 13 12 11 28 28 C 1.46931 * 120.62904 * 180.02562 * 10 8 6 29 29 H 1.09008 * 109.46986 * 288.74222 * 1 2 3 30 30 H 1.09001 * 109.47415 * 48.74302 * 1 2 3 31 31 H 1.09004 * 109.47258 * 168.74779 * 1 2 3 32 32 H 1.08993 * 109.47084 * 195.65857 * 3 2 1 33 33 H 1.09001 * 109.47232 * 315.66283 * 3 2 1 34 34 H 1.08996 * 109.46866 * 75.65403 * 3 2 1 35 35 H 1.08994 * 113.61820 * 156.33252 * 4 2 1 36 36 H 1.09002 * 113.61784 * 25.43043 * 4 2 1 37 37 H 1.08997 * 113.61421 * 220.01774 * 5 4 2 38 38 H 1.09003 * 113.61567 * 89.11790 * 5 4 2 39 39 H 1.09004 * 109.58198 * 353.42842 * 11 10 8 40 40 H 1.09000 * 109.58479 * 113.84228 * 11 10 8 41 41 H 1.09001 * 109.56566 * 185.55640 * 12 11 10 42 42 H 1.09002 * 109.35873 * 65.49931 * 12 11 10 43 43 H 1.09000 * 109.45738 * 301.21647 * 13 12 11 44 44 H 1.08994 * 109.47258 * 299.99615 * 15 14 13 45 45 H 1.09000 * 109.47010 * 60.00649 * 15 14 13 46 46 H 1.08996 * 109.47227 * 300.00541 * 16 15 14 47 47 H 1.09008 * 109.46489 * 60.00360 * 16 15 14 48 48 H 1.09005 * 109.47420 * 300.00589 * 17 16 15 49 49 H 1.09000 * 109.47460 * 60.00398 * 17 16 15 50 50 H 0.96996 * 119.99654 * 0.02562 * 18 17 16 51 51 H 0.97001 * 120.00095 * 179.97438 * 22 21 19 52 52 H 1.09003 * 109.49669 * 178.68690 * 27 13 12 53 53 H 1.08993 * 109.50097 * 58.58741 * 27 13 12 54 54 H 1.08996 * 109.58373 * 246.15212 * 28 10 8 55 55 H 1.08997 * 109.58775 * 6.43812 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9290 -1.0594 5 6 2.0930 -2.0425 -0.0001 6 6 2.1461 -0.9291 1.0593 7 1 1.4957 -1.1095 1.9152 8 6 3.5467 -0.5431 1.4595 9 8 4.4759 -0.7758 0.7157 10 7 3.7660 0.0657 2.6418 11 6 2.6491 0.3653 3.5482 12 6 2.6840 1.8496 3.9074 13 6 4.0626 2.2038 4.4696 14 8 4.0877 3.5855 4.8335 15 6 3.6862 3.8389 6.1813 16 6 3.7517 5.3422 6.4588 17 6 3.3212 5.6136 7.9017 18 7 3.3833 7.0531 8.1672 19 6 3.0411 7.5369 9.4017 20 1 2.7258 6.8574 10.1796 21 6 3.1005 8.9007 9.6535 22 7 3.4861 9.7287 8.7058 23 14 2.6344 9.5608 11.3377 24 1 2.2394 8.4330 12.2193 25 1 3.7967 10.2696 11.9306 26 1 1.4958 10.5044 11.2018 27 6 5.1323 1.9365 3.4083 28 6 5.1258 0.4485 3.0458 29 1 -0.3633 0.3302 0.9733 30 1 -0.3634 0.6777 -0.7725 31 1 -0.3634 -1.0079 -0.2005 32 1 3.1784 1.3588 -0.2774 33 1 1.5900 2.0301 -0.7182 34 1 2.0324 1.8431 0.9956 35 1 3.1590 -0.6498 -1.3491 36 1 1.4945 -1.1085 -1.9147 37 1 2.9717 -2.6874 -0.0002 38 1 1.1569 -2.6010 -0.0001 39 1 1.7056 0.1321 3.0548 40 1 2.7457 -0.2300 4.4562 41 1 1.9204 2.0622 4.6556 42 1 2.4927 2.4423 3.0128 43 1 4.2637 1.5930 5.3497 44 1 2.6656 3.4860 6.3288 45 1 4.3544 3.3143 6.8642 46 1 4.7724 5.6947 6.3114 47 1 3.0837 5.8671 5.7759 48 1 2.3002 5.2610 8.0487 49 1 3.9887 5.0887 8.5849 50 1 3.6668 7.6633 7.4686 51 1 3.5273 10.6817 8.8817 52 1 6.1113 2.2110 3.8013 53 1 4.9180 2.5285 2.5186 54 1 5.4289 -0.1396 3.9120 55 1 5.8162 0.2682 2.2219 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717518913.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:50 Heat of formation + Delta-G solvation = -84.792283 kcal Electronic energy + Delta-G solvation = -30029.955580 eV Core-core repulsion = 26066.461025 eV Total energy + Delta-G solvation = -3963.494555 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.14790 -40.20089 -38.90894 -37.61737 -36.79807 -34.31513 -33.08261 -32.24247 -31.67061 -31.26591 -28.50564 -27.85381 -26.92113 -25.48958 -24.49146 -24.07720 -23.41613 -22.49776 -22.05830 -20.59758 -19.16779 -18.96712 -18.33996 -17.60121 -16.94744 -16.69649 -16.62209 -16.48892 -15.90446 -15.67153 -15.59067 -15.41181 -15.25865 -15.03243 -14.91762 -14.55698 -14.31875 -14.08377 -13.93761 -13.62756 -13.37923 -13.33681 -13.14629 -12.97387 -12.89702 -12.87456 -12.49172 -12.42119 -12.40978 -12.29137 -12.10211 -12.08169 -12.02624 -11.89997 -11.77506 -11.71313 -11.48650 -11.08665 -10.99205 -10.96181 -10.68308 -10.37279 -9.74585 -9.03303 -7.96659 -5.26921 1.47644 1.49149 1.51403 1.59369 1.93265 2.50233 2.65852 3.37228 3.40368 3.42906 3.58448 3.68519 3.79343 3.83436 3.92229 3.99178 4.05637 4.09000 4.15316 4.23887 4.27090 4.29683 4.36639 4.44082 4.48693 4.58785 4.60539 4.68074 4.68864 4.71731 4.76227 4.77450 4.81026 4.81493 4.84481 4.88069 4.94349 4.97984 5.03518 5.09616 5.11410 5.15412 5.24819 5.29600 5.32750 5.33170 5.40396 5.48583 5.49917 5.57727 6.24944 6.33835 6.35887 7.14432 7.31109 8.06498 8.29305 9.27427 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023734 B = 0.001695 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.450198 B =16515.078318 C =17021.304332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.061 4.061 3 C -0.141 4.141 4 C -0.136 4.136 5 C -0.114 4.114 6 C -0.137 4.137 7 H 0.122 0.878 8 C 0.534 3.466 9 O -0.581 6.581 10 N -0.610 5.610 11 C 0.108 3.892 12 C -0.154 4.154 13 C 0.086 3.914 14 O -0.402 6.402 15 C 0.078 3.922 16 C -0.114 4.114 17 C 0.156 3.844 18 N -0.751 5.751 19 C -0.248 4.248 20 H 0.080 0.920 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.979 3.021 24 H -0.263 1.263 25 H -0.293 1.293 26 H -0.292 1.292 27 C -0.125 4.125 28 C 0.117 3.883 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.028 0.972 49 H 0.026 0.974 50 H 0.373 0.627 51 H 0.252 0.748 52 H 0.084 0.916 53 H 0.055 0.945 54 H 0.088 0.912 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.095 -28.926 -17.270 34.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.173 4.173 5 C -0.151 4.151 6 C -0.158 4.158 7 H 0.140 0.860 8 C 0.324 3.676 9 O -0.461 6.461 10 N -0.342 5.342 11 C -0.014 4.014 12 C -0.192 4.192 13 C 0.029 3.971 14 O -0.322 6.322 15 C 0.001 3.999 16 C -0.152 4.152 17 C 0.029 3.971 18 N -0.393 5.393 19 C -0.379 4.379 20 H 0.098 0.902 21 C -0.272 4.272 22 N -0.622 5.622 23 Si 0.807 3.193 24 H -0.187 1.187 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.163 4.163 28 C -0.005 4.005 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.046 0.954 49 H 0.044 0.956 50 H 0.204 0.796 51 H 0.061 0.939 52 H 0.103 0.897 53 H 0.074 0.926 54 H 0.106 0.894 55 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.607 -28.950 -17.587 34.334 hybrid contribution 0.388 1.176 0.625 1.387 sum -5.219 -27.774 -16.962 32.960 Atomic orbital electron populations 1.21629 0.90277 1.03211 1.03080 1.21734 0.96916 0.93051 0.94430 1.21812 0.99511 0.96334 1.02177 1.23065 1.00522 0.96324 0.97383 1.22744 1.03034 0.95315 0.94052 1.22705 0.92938 1.00105 1.00037 0.86021 1.20508 0.91007 0.76121 0.79980 1.90653 1.46427 1.56578 1.52407 1.48230 1.08738 1.58496 1.18761 1.21892 0.89990 0.95010 0.94473 1.22343 0.97927 0.96599 1.02328 1.22185 0.95110 0.82388 0.97423 1.87919 1.88642 1.25969 1.29682 1.22350 0.99860 0.94870 0.82807 1.21485 1.01620 0.95980 0.96125 1.20670 0.97950 0.84533 0.93913 1.42626 1.81189 1.03067 1.12461 1.19729 1.36022 0.91504 0.90688 0.90186 1.25672 1.03154 0.96486 1.01866 1.69841 1.55643 1.02449 1.34314 0.84997 0.76904 0.78161 0.79223 1.18705 1.22006 1.21942 1.21900 0.99773 0.96007 0.98642 1.21529 0.83850 0.93917 1.01211 0.91093 0.91655 0.90776 0.94872 0.91535 0.92360 0.92038 0.90102 0.92439 0.86771 0.87239 0.88932 0.89009 0.91920 0.90335 0.91657 0.92032 0.92516 0.92350 0.95362 0.95570 0.79582 0.93948 0.89734 0.92611 0.89370 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 9.07 71.98 0.65 -0.26 16 2 C -0.06 -0.74 1.34 -51.65 -0.07 -0.81 16 3 C -0.14 -2.24 8.30 71.98 0.60 -1.64 16 4 C -0.14 -1.95 6.79 31.12 0.21 -1.74 16 5 C -0.11 -1.40 7.08 31.12 0.22 -1.18 16 6 C -0.14 -1.72 2.96 -11.02 -0.03 -1.75 16 7 H 0.12 0.88 6.24 -2.39 -0.01 0.87 16 8 C 0.53 10.11 5.51 87.65 0.48 10.59 16 9 O -0.58 -15.70 14.62 -3.02 -0.04 -15.74 16 10 N -0.61 -9.41 2.98 -819.82 -2.44 -11.85 16 11 C 0.11 1.07 6.24 86.22 0.54 1.61 16 12 C -0.15 -2.12 5.68 30.53 0.17 -1.95 16 13 C 0.09 1.52 2.57 30.62 0.08 1.59 16 14 O -0.40 -10.09 9.99 -148.98 -1.49 -11.58 16 15 C 0.08 1.90 5.75 71.98 0.41 2.32 16 16 C -0.11 -3.77 5.70 30.59 0.17 -3.59 16 17 C 0.16 6.15 6.26 86.38 0.54 6.69 16 18 N -0.75 -39.17 5.60 -343.44 -1.92 -41.10 16 19 C -0.25 -14.02 9.99 84.03 0.84 -13.18 16 20 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 21 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 22 N -0.97 -60.52 13.06 21.65 0.28 -60.24 16 23 Si 0.98 46.19 29.55 68.60 2.03 48.22 16 24 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 27 C -0.12 -2.23 5.73 30.66 0.18 -2.06 16 28 C 0.12 1.90 6.43 86.35 0.56 2.46 16 29 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.06 0.49 8.11 -2.39 -0.02 0.47 16 31 H 0.07 0.37 7.34 -2.39 -0.02 0.35 16 32 H 0.03 0.69 7.31 -2.39 -0.02 0.68 16 33 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 34 H 0.06 0.92 7.21 -2.39 -0.02 0.90 16 35 H 0.06 1.26 7.11 -2.39 -0.02 1.24 16 36 H 0.08 0.91 8.10 -2.39 -0.02 0.90 16 37 H 0.06 0.94 7.82 -2.39 -0.02 0.92 16 38 H 0.11 0.79 7.65 -2.39 -0.02 0.77 16 39 H 0.11 0.70 5.49 -2.38 -0.01 0.69 16 40 H 0.09 0.60 8.14 -2.39 -0.02 0.59 16 41 H 0.09 1.11 7.84 -2.39 -0.02 1.09 16 42 H 0.06 1.07 7.22 -2.39 -0.02 1.05 16 43 H 0.08 1.13 7.79 -2.39 -0.02 1.11 16 44 H 0.07 1.37 7.84 -2.39 -0.02 1.35 16 45 H 0.06 1.35 8.08 -2.39 -0.02 1.33 16 46 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 48 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 49 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.37 20.85 7.67 -92.71 -0.71 20.13 16 51 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 52 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 53 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 54 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 55 H 0.08 1.61 7.00 -2.39 -0.02 1.59 16 Total: -1.00 -73.14 421.36 2.57 -70.57 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.14 Total: 28.77 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 6.02 Total: -7.06 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -4.08 Total: -113.18 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -1.53 Total: -27.32 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -73.14 2.57 -70.57 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717518913.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.220 kcal (2) G-P(sol) polarization free energy of solvation -73.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds