Wall clock time and date at job start Tue Mar 31 2020 20:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00420 * 2 1 4 4 H 1.48509 * 109.47045 * 270.17625 * 3 2 1 5 5 H 1.48505 * 109.47078 * 30.17127 * 3 2 1 6 6 H 1.48500 * 109.47364 * 150.17438 * 3 2 1 7 7 C 1.38815 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99845 * 340.02611 * 7 2 1 9 9 N 1.36937 * 120.00293 * 160.02171 * 7 2 1 10 10 C 1.47599 * 118.64367 * 332.42991 * 9 7 2 11 11 C 1.53950 * 112.14322 * 222.10991 * 10 9 7 12 12 C 1.50877 * 110.09305 * 40.56059 * 11 10 9 13 13 C 1.52566 * 109.36333 * 268.11762 * 12 11 10 14 14 C 1.47092 * 114.32483 * 85.01233 * 13 12 11 15 15 C 1.44574 * 118.64129 * 152.40671 * 9 7 2 16 16 H 1.09001 * 109.45002 * 209.30677 * 15 9 7 17 17 C 1.53003 * 109.45410 * 329.25985 * 15 9 7 18 18 N 1.46509 * 109.46523 * 304.99808 * 17 15 9 19 19 C 1.34774 * 119.99515 * 179.97438 * 18 17 15 20 20 O 1.21281 * 120.00500 * 0.02562 * 19 18 17 21 21 C 1.50704 * 119.99653 * 180.02562 * 19 18 17 22 22 C 1.53006 * 109.46959 * 179.97438 * 21 19 18 23 23 C 1.52993 * 109.46927 * 179.97438 * 22 21 19 24 24 H 1.09001 * 109.48242 * 305.02157 * 23 22 21 25 25 C 1.53095 * 109.47901 * 185.00126 * 23 22 21 26 26 C 1.53182 * 109.16390 * 182.40972 * 25 23 22 27 27 C 1.53177 * 109.03666 * 56.97756 * 26 25 23 28 28 C 1.53089 * 109.16528 * 303.02266 * 27 26 25 29 29 O 1.42904 * 109.41586 * 57.60861 * 28 27 26 30 30 H 0.97004 * 119.99306 * 359.97438 * 1 2 3 31 31 H 1.09000 * 108.94468 * 342.79275 * 10 9 7 32 32 H 1.08994 * 108.94616 * 101.42095 * 10 9 7 33 33 H 1.08996 * 109.36737 * 160.75470 * 11 10 9 34 34 H 1.09003 * 109.36285 * 280.37021 * 11 10 9 35 35 H 1.09008 * 109.48571 * 148.15028 * 12 11 10 36 36 H 1.08998 * 109.51277 * 28.10105 * 12 11 10 37 37 H 1.08997 * 108.51146 * 323.75502 * 13 12 11 38 38 H 1.09005 * 108.51322 * 206.26992 * 13 12 11 39 39 H 1.08996 * 109.32662 * 176.93422 * 14 13 12 40 40 H 1.08999 * 109.18766 * 57.37297 * 14 13 12 41 41 H 1.08998 * 109.47156 * 64.99338 * 17 15 9 42 42 H 1.08994 * 109.47382 * 185.00395 * 17 15 9 43 43 H 0.96995 * 120.00493 * 0.02562 * 18 17 15 44 44 H 1.08996 * 109.47354 * 299.99836 * 21 19 18 45 45 H 1.09001 * 109.47176 * 60.00372 * 21 19 18 46 46 H 1.08996 * 109.47056 * 300.00144 * 22 21 19 47 47 H 1.09001 * 109.46770 * 60.00249 * 22 21 19 48 48 H 1.08992 * 109.52306 * 302.31621 * 25 23 22 49 49 H 1.09008 * 109.52222 * 62.44436 * 25 23 22 50 50 H 1.08995 * 109.54515 * 176.84697 * 26 25 23 51 51 H 1.09006 * 109.54130 * 297.11455 * 26 25 23 52 52 H 1.09001 * 109.51877 * 62.92693 * 27 26 25 53 53 H 1.08993 * 109.52373 * 183.04861 * 27 26 25 54 54 H 1.09003 * 109.48187 * 177.59019 * 28 27 26 55 55 H 1.08994 * 109.47946 * 297.62220 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4941 2.0485 -1.4002 5 1 1.4496 2.6516 0.7037 6 1 3.5496 1.4390 0.6963 7 6 2.0103 -1.2022 0.0005 8 1 1.5190 -2.1092 0.3204 9 7 3.3178 -1.2381 -0.4046 10 6 3.7861 -0.2284 -1.3740 11 6 4.6986 -0.8393 -2.4530 12 6 4.1606 -2.1799 -2.8886 13 6 4.7946 -3.2790 -2.0414 14 6 4.1148 -3.5247 -0.7603 15 6 4.1827 -2.2631 0.1353 16 1 5.2080 -1.8943 0.1650 17 6 3.7281 -2.6192 1.5521 18 7 3.6808 -1.4042 2.3695 19 6 3.3040 -1.4756 3.6615 20 8 3.0045 -2.5456 4.1477 21 6 3.2549 -0.2258 4.5022 22 6 2.7991 -0.5816 5.9188 23 6 2.7498 0.6871 6.7724 24 1 3.7188 1.1852 6.7396 25 6 2.4153 0.3161 8.2195 26 6 2.3084 1.5957 9.0549 27 6 1.2522 2.5130 8.4308 28 6 1.6317 2.7991 6.9756 29 8 1.7445 1.5657 6.2628 30 1 -0.4849 0.8401 0.0004 31 1 2.9213 0.2257 -1.8576 32 1 4.3380 0.5453 -0.8404 33 1 4.7405 -0.1701 -3.3123 34 1 5.7023 -0.9671 -2.0475 35 1 4.4022 -2.3450 -3.9386 36 1 3.0787 -2.1981 -2.7573 37 1 5.8296 -3.0048 -1.8371 38 1 4.7928 -4.2044 -2.6173 39 1 4.5988 -4.3567 -0.2489 40 1 3.0715 -3.7762 -0.9508 41 1 2.7362 -3.0695 1.5131 42 1 4.4311 -3.3261 1.9925 43 1 3.9200 -0.5484 1.9807 44 1 4.2465 0.2249 4.5416 45 1 2.5518 0.4811 4.0616 46 1 1.8073 -1.0320 5.8790 47 1 3.5019 -1.2886 6.3597 48 1 1.4656 -0.2181 8.2484 49 1 3.2031 -0.3194 8.6241 50 1 2.0154 1.3426 10.0737 51 1 3.2722 2.1048 9.0669 52 1 0.2790 2.0231 8.4640 53 1 1.2080 3.4490 8.9875 54 1 0.8613 3.4167 6.5137 55 1 2.5858 3.3250 6.9454 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717541530.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:44 Heat of formation + Delta-G solvation = -105.839775 kcal Electronic energy + Delta-G solvation = -31446.740444 eV Core-core repulsion = 27482.333201 eV Total energy + Delta-G solvation = -3964.407243 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.93827 -40.32221 -39.66419 -36.09554 -35.26010 -34.88722 -34.53929 -33.37495 -33.13810 -31.12615 -28.93798 -27.49138 -26.47221 -25.42062 -24.78468 -23.70498 -22.48029 -21.52332 -21.21804 -21.11508 -20.72210 -18.48903 -17.83294 -17.54763 -17.27090 -16.93473 -16.76816 -16.49771 -16.15272 -15.81503 -15.57327 -15.52319 -15.37406 -14.86747 -14.59703 -14.55284 -14.40953 -14.35059 -13.72390 -13.63847 -13.57685 -13.46014 -13.15974 -13.02943 -12.82591 -12.78725 -12.67402 -12.29932 -12.16198 -12.09632 -11.85159 -11.82209 -11.65399 -11.58070 -11.41792 -11.34135 -11.30389 -11.19274 -10.99204 -10.72122 -10.63325 -10.32622 -9.82434 -8.80279 -8.07198 -5.40578 1.34092 1.39819 1.51857 1.76999 2.44534 2.48105 2.87186 3.08500 3.37163 3.69024 3.80492 3.93657 3.94203 3.98178 4.02585 4.05550 4.14099 4.19304 4.29122 4.32304 4.34515 4.35590 4.45942 4.48729 4.53591 4.59387 4.65075 4.74467 4.80451 4.81347 4.87801 4.90215 4.93173 5.00693 5.03012 5.09429 5.10117 5.12832 5.13083 5.17931 5.19326 5.26609 5.36045 5.40918 5.41220 5.51005 5.55297 5.66901 5.73454 5.96885 6.24450 6.37504 6.72383 7.04899 7.39043 7.75709 8.04451 9.13472 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015399 B = 0.003119 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.840292 B = 8974.536045 C =10055.940320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.031 4.031 3 Si 0.940 3.060 4 H -0.283 1.283 5 H -0.326 1.326 6 H -0.243 1.243 7 C -0.222 4.222 8 H 0.038 0.962 9 N -0.601 5.601 10 C 0.119 3.881 11 C -0.123 4.123 12 C -0.109 4.109 13 C -0.101 4.101 14 C -0.129 4.129 15 C 0.175 3.825 16 H 0.078 0.922 17 C 0.132 3.868 18 N -0.699 5.699 19 C 0.505 3.495 20 O -0.594 6.594 21 C -0.132 4.132 22 C -0.087 4.087 23 C 0.090 3.910 24 H 0.076 0.924 25 C -0.150 4.150 26 C -0.119 4.119 27 C -0.155 4.155 28 C 0.051 3.949 29 O -0.408 6.408 30 H 0.255 0.745 31 H 0.039 0.961 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.032 0.968 41 H 0.031 0.969 42 H 0.073 0.927 43 H 0.404 0.596 44 H 0.119 0.881 45 H 0.082 0.918 46 H 0.047 0.953 47 H 0.092 0.908 48 H 0.056 0.944 49 H 0.088 0.912 50 H 0.078 0.922 51 H 0.076 0.924 52 H 0.058 0.942 53 H 0.091 0.909 54 H 0.091 0.909 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.352 3.851 10.454 18.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.225 4.225 3 Si 0.770 3.230 4 H -0.210 1.210 5 H -0.256 1.256 6 H -0.167 1.167 7 C -0.352 4.352 8 H 0.056 0.944 9 N -0.324 5.324 10 C -0.006 4.006 11 C -0.162 4.162 12 C -0.147 4.147 13 C -0.138 4.138 14 C -0.169 4.169 15 C 0.068 3.932 16 H 0.096 0.904 17 C 0.007 3.993 18 N -0.347 5.347 19 C 0.293 3.707 20 O -0.477 6.477 21 C -0.172 4.172 22 C -0.125 4.125 23 C 0.033 3.967 24 H 0.094 0.906 25 C -0.187 4.187 26 C -0.156 4.156 27 C -0.192 4.192 28 C -0.025 4.025 29 O -0.328 6.328 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.091 0.909 43 H 0.239 0.761 44 H 0.137 0.863 45 H 0.101 0.899 46 H 0.066 0.934 47 H 0.110 0.890 48 H 0.075 0.925 49 H 0.107 0.893 50 H 0.097 0.903 51 H 0.094 0.906 52 H 0.077 0.923 53 H 0.110 0.890 54 H 0.109 0.891 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.962 3.126 10.609 17.811 hybrid contribution -0.828 1.196 -0.255 1.477 sum 13.133 4.322 10.354 17.273 Atomic orbital electron populations 1.69997 1.07877 1.26640 1.56508 1.25808 0.95440 1.00626 1.00621 0.86131 0.78842 0.80539 0.77449 1.20980 1.25563 1.16677 1.18494 0.86796 0.92530 1.37351 0.94374 1.44049 1.07494 1.33815 1.47056 1.21751 0.96861 0.91176 0.90763 1.21799 0.99127 0.97321 0.97955 1.20954 0.99875 0.94859 0.99003 1.20284 0.99720 0.98525 0.95303 1.21270 1.00081 0.98193 0.97369 1.20757 0.93790 0.89178 0.89506 0.90380 1.21436 0.99916 0.86812 0.91097 1.45792 1.67107 1.11752 1.10095 1.21139 0.75604 0.91285 0.82694 1.90601 1.51149 1.32362 1.73560 1.21617 1.04851 0.94964 0.95744 1.21291 1.01992 0.96306 0.92944 1.22219 0.91422 0.90081 0.92966 0.90582 1.22198 1.02784 0.98977 0.94784 1.21597 0.99600 0.95117 0.99284 1.22181 0.99494 1.01321 0.96220 1.22745 1.01811 0.85540 0.92427 1.87991 1.58308 1.29780 1.56712 0.93602 0.94249 0.95337 0.90956 0.90290 0.91245 0.94515 0.90944 0.92050 0.90456 0.94867 0.95082 0.90864 0.76123 0.86282 0.89942 0.93429 0.88978 0.92501 0.89311 0.90304 0.90572 0.92344 0.89000 0.89114 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.10 13.97 21.65 0.30 -60.80 16 2 C -0.03 -1.76 5.16 84.86 0.44 -1.33 16 3 Si 0.94 44.52 24.01 68.60 1.65 46.16 16 4 H -0.28 -12.92 6.62 99.48 0.66 -12.26 16 5 H -0.33 -16.44 7.11 99.48 0.71 -15.73 16 6 H -0.24 -10.01 6.55 99.48 0.65 -9.36 16 7 C -0.22 -11.80 8.09 84.03 0.68 -11.12 16 8 H 0.04 2.38 6.89 -2.91 -0.02 2.36 16 9 N -0.60 -25.05 1.56 -674.26 -1.05 -26.10 16 10 C 0.12 4.53 3.98 86.49 0.34 4.88 16 11 C -0.12 -3.56 5.71 30.23 0.17 -3.38 16 12 C -0.11 -3.22 5.50 29.76 0.16 -3.06 16 13 C -0.10 -2.63 5.15 28.61 0.15 -2.48 16 14 C -0.13 -3.98 5.06 29.39 0.15 -3.83 16 15 C 0.17 5.99 2.19 45.99 0.10 6.09 16 16 H 0.08 2.29 8.07 -2.39 -0.02 2.27 16 17 C 0.13 5.00 4.53 86.38 0.39 5.39 16 18 N -0.70 -26.60 4.72 -463.04 -2.19 -28.79 16 19 C 0.50 19.61 7.83 87.66 0.69 20.30 16 20 O -0.59 -26.80 15.98 -3.03 -0.05 -26.85 16 21 C -0.13 -4.12 5.60 29.85 0.17 -3.95 16 22 C -0.09 -2.51 4.21 30.59 0.13 -2.39 16 23 C 0.09 2.13 2.64 30.62 0.08 2.21 16 24 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 25 C -0.15 -2.90 5.42 30.69 0.17 -2.73 16 26 C -0.12 -1.80 6.03 30.71 0.19 -1.62 16 27 C -0.15 -2.60 6.14 30.68 0.19 -2.41 16 28 C 0.05 1.06 6.84 72.01 0.49 1.56 16 29 O -0.41 -11.66 9.94 -148.98 -1.48 -13.14 16 30 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 31 H 0.04 1.76 5.23 -2.39 -0.01 1.74 16 32 H 0.03 1.06 5.91 -2.39 -0.01 1.04 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.08 1.90 7.32 -2.39 -0.02 1.89 16 35 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.04 1.39 7.48 -2.39 -0.02 1.37 16 37 H 0.07 1.58 7.36 -2.39 -0.02 1.56 16 38 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.08 2.02 8.11 -2.39 -0.02 2.00 16 40 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.03 1.43 6.82 -2.39 -0.02 1.42 16 42 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.40 14.93 8.06 -92.71 -0.75 14.19 16 44 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 45 H 0.08 2.91 7.82 -2.39 -0.02 2.89 16 46 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 47 H 0.09 2.41 8.10 -2.39 -0.02 2.39 16 48 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 50 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 52 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 53 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 54 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 55 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -72.33 406.26 1.86 -70.47 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: 0.00 Total: 36.92 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 4.68 Total: 2.12 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -2.93 Total: -115.68 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -1.53 Total: -39.98 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.65 Total: 46.16 kcal Total: -72.33 1.86 -70.47 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717541530.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.368 kcal (2) G-P(sol) polarization free energy of solvation -72.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds