Wall clock time and date at job start Tue Mar 31 2020 20:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 120.00107 * 2 1 4 4 H 1.48503 * 109.47537 * 240.00274 * 3 2 1 5 5 H 1.48504 * 109.47463 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47257 * 120.00171 * 3 2 1 7 7 C 1.38810 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00096 * 164.89398 * 7 2 1 9 9 N 1.36945 * 119.99750 * 344.89003 * 7 2 1 10 10 C 1.47605 * 118.64376 * 331.39776 * 9 7 2 11 11 C 1.53947 * 112.13616 * 222.12969 * 10 9 7 12 12 C 1.50879 * 110.09939 * 40.56474 * 11 10 9 13 13 C 1.52564 * 109.36036 * 268.11194 * 12 11 10 14 14 C 1.47093 * 114.32465 * 85.01202 * 13 12 11 15 15 C 1.44573 * 118.63807 * 151.39556 * 9 7 2 16 16 H 1.09003 * 109.42810 * 209.29947 * 15 9 7 17 17 C 1.52998 * 109.45322 * 329.23400 * 15 9 7 18 18 N 1.46498 * 109.47177 * 305.13268 * 17 15 9 19 19 C 1.34778 * 120.00136 * 180.02562 * 18 17 15 20 20 O 1.21278 * 119.99689 * 0.27431 * 19 18 17 21 21 C 1.50692 * 120.00094 * 179.97438 * 19 18 17 22 22 C 1.52998 * 109.47135 * 179.97438 * 21 19 18 23 23 C 1.53007 * 109.47224 * 180.02562 * 22 21 19 24 24 H 1.08996 * 109.48169 * 54.99885 * 23 22 21 25 25 C 1.53091 * 109.48033 * 175.02484 * 23 22 21 26 26 C 1.53182 * 109.16251 * 177.58232 * 25 23 22 27 27 C 1.53187 * 109.04084 * 303.03373 * 26 25 23 28 28 C 1.53090 * 109.16447 * 56.97457 * 27 26 25 29 29 O 1.42903 * 109.41694 * 302.39127 * 28 27 26 30 30 H 0.97003 * 119.99733 * 359.97438 * 1 2 3 31 31 H 1.08998 * 108.94626 * 101.44165 * 10 9 7 32 32 H 1.08999 * 108.87749 * 342.76797 * 10 9 7 33 33 H 1.09004 * 109.36899 * 280.36801 * 11 10 9 34 34 H 1.09003 * 109.26104 * 160.69516 * 11 10 9 35 35 H 1.09004 * 109.48790 * 148.14529 * 12 11 10 36 36 H 1.09001 * 109.50663 * 28.08935 * 12 11 10 37 37 H 1.09003 * 108.51228 * 323.75784 * 13 12 11 38 38 H 1.09001 * 108.38897 * 206.17111 * 13 12 11 39 39 H 1.09003 * 109.33014 * 176.93639 * 14 13 12 40 40 H 1.09002 * 109.32840 * 57.45793 * 14 13 12 41 41 H 1.09005 * 109.46774 * 185.13457 * 17 15 9 42 42 H 1.08995 * 109.46756 * 65.13614 * 17 15 9 43 43 H 0.97001 * 119.99764 * 0.02562 * 18 17 15 44 44 H 1.09002 * 109.47586 * 300.00197 * 21 19 18 45 45 H 1.09008 * 109.47095 * 59.99834 * 21 19 18 46 46 H 1.09001 * 109.47371 * 300.00091 * 22 21 19 47 47 H 1.08996 * 109.47512 * 60.00067 * 22 21 19 48 48 H 1.09004 * 109.52249 * 297.49399 * 25 23 22 49 49 H 1.08994 * 109.52505 * 57.68201 * 25 23 22 50 50 H 1.08990 * 109.54340 * 183.16660 * 26 25 23 51 51 H 1.08999 * 109.60728 * 62.94050 * 26 25 23 52 52 H 1.08995 * 109.52164 * 297.07036 * 27 26 25 53 53 H 1.09003 * 109.52300 * 176.88183 * 27 26 25 54 54 H 1.09000 * 109.48039 * 182.40976 * 28 27 26 55 55 H 1.09001 * 109.48844 * 62.37702 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0623 -1.2182 -0.2443 9 7 1.3610 -2.3677 0.3081 10 6 0.1977 -2.3109 1.2148 11 6 0.2037 -3.4603 2.2389 12 6 1.6051 -3.6950 2.7466 13 6 2.2851 -4.7532 1.8832 14 6 2.9136 -4.2265 0.6620 15 6 1.8434 -3.6030 -0.2677 16 1 1.0121 -4.2987 -0.3819 17 6 2.4620 -3.3191 -1.6379 18 7 1.4865 -2.6212 -2.4790 19 6 1.8128 -2.2675 -3.7379 20 8 2.9125 -2.5313 -4.1761 21 6 0.8091 -1.5501 -4.6033 22 6 1.4278 -1.2661 -5.9735 23 6 0.4089 -0.5372 -6.8519 24 1 0.0610 0.3589 -6.3380 25 6 1.0666 -0.1430 -8.1770 26 6 0.0246 0.5320 -9.0743 27 6 -1.1573 -0.4221 -9.2728 28 6 -1.7290 -0.8053 -7.9053 29 8 -0.7010 -1.3996 -7.1102 30 1 -0.4850 0.8401 0.0004 31 1 -0.7156 -2.3691 0.6227 32 1 0.2128 -1.3609 1.7489 33 1 -0.1658 -4.3693 1.7644 34 1 -0.4449 -3.2000 3.0754 35 1 1.5645 -4.0398 3.7799 36 1 2.1713 -2.7650 2.6954 37 1 1.5411 -5.4965 1.5966 38 1 3.0514 -5.2452 2.4822 39 1 3.4188 -5.0376 0.1376 40 1 3.6447 -3.4645 0.9324 41 1 2.7431 -4.2597 -2.1116 42 1 3.3475 -2.6955 -1.5146 43 1 0.6056 -2.4137 -2.1298 44 1 -0.0763 -2.1739 -4.7262 45 1 0.5279 -0.6093 -4.1299 46 1 2.3130 -0.6421 -5.8502 47 1 1.7093 -2.2065 -6.4471 48 1 1.8859 0.5499 -7.9851 49 1 1.4509 -1.0346 -8.6723 50 1 0.4716 0.7647 -10.0407 51 1 -0.3238 1.4509 -8.6028 52 1 -0.8181 -1.3194 -9.7901 53 1 -1.9283 0.0713 -9.8646 54 1 -2.5432 -1.5177 -8.0384 55 1 -2.1049 0.0873 -7.4052 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717541534.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:55 Heat of formation + Delta-G solvation = -107.568534 kcal Electronic energy + Delta-G solvation = -31268.657328 eV Core-core repulsion = 27304.175121 eV Total energy + Delta-G solvation = -3964.482207 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.85393 -40.25206 -39.49901 -35.99811 -35.20492 -34.85573 -34.52343 -33.22194 -32.46268 -31.07994 -28.68602 -27.46129 -26.35699 -25.19661 -24.79415 -23.58258 -22.42626 -21.44496 -21.20058 -20.77906 -20.68579 -18.36672 -17.69108 -17.50041 -17.24429 -16.75505 -16.55763 -16.28044 -16.04556 -15.81083 -15.52992 -15.36962 -15.20432 -14.87970 -14.58526 -14.52127 -14.34714 -13.95094 -13.64585 -13.57909 -13.38058 -13.12746 -12.99212 -12.91301 -12.80943 -12.73489 -12.67150 -12.38973 -12.15700 -12.08996 -12.00172 -11.84161 -11.57652 -11.53347 -11.39435 -11.31037 -11.19857 -11.18361 -11.03581 -10.67011 -10.34570 -10.31356 -9.73322 -8.52386 -7.77686 -5.21505 1.42848 1.46514 1.50225 1.82938 2.50555 2.56823 2.86122 3.36972 3.61550 3.70964 3.83618 3.95084 4.00283 4.04984 4.08220 4.10990 4.15072 4.28078 4.33460 4.37185 4.43443 4.50264 4.52542 4.60279 4.63308 4.68765 4.70832 4.77918 4.85171 4.89904 4.94783 4.99999 5.01974 5.08748 5.09938 5.13870 5.14449 5.19559 5.26334 5.27334 5.28317 5.39067 5.40760 5.43778 5.56617 5.67490 5.73189 5.77916 5.82669 5.91194 6.34884 6.49415 6.82487 7.28808 7.45620 8.02436 8.41391 9.25702 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013434 B = 0.002948 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.774419 B = 9495.592364 C =10275.502905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.023 4.023 3 Si 0.930 3.070 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.288 1.288 7 C -0.235 4.235 8 H 0.046 0.954 9 N -0.587 5.587 10 C 0.190 3.810 11 C -0.132 4.132 12 C -0.103 4.103 13 C -0.100 4.100 14 C -0.128 4.128 15 C 0.174 3.826 16 H 0.055 0.945 17 C 0.133 3.867 18 N -0.692 5.692 19 C 0.505 3.495 20 O -0.599 6.599 21 C -0.126 4.126 22 C -0.085 4.085 23 C 0.093 3.907 24 H 0.059 0.941 25 C -0.149 4.149 26 C -0.122 4.122 27 C -0.152 4.152 28 C 0.051 3.949 29 O -0.397 6.397 30 H 0.246 0.754 31 H 0.003 0.997 32 H 0.037 0.963 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.041 0.959 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.041 0.959 41 H 0.062 0.938 42 H 0.038 0.962 43 H 0.408 0.592 44 H 0.104 0.896 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.078 0.922 49 H 0.067 0.933 50 H 0.079 0.921 51 H 0.066 0.934 52 H 0.067 0.933 53 H 0.090 0.910 54 H 0.103 0.897 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.699 -4.328 -10.644 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.219 4.219 3 Si 0.761 3.239 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.215 1.215 7 C -0.366 4.366 8 H 0.063 0.937 9 N -0.309 5.309 10 C 0.065 3.935 11 C -0.171 4.171 12 C -0.141 4.141 13 C -0.138 4.138 14 C -0.169 4.169 15 C 0.066 3.934 16 H 0.073 0.927 17 C 0.008 3.992 18 N -0.340 5.340 19 C 0.293 3.707 20 O -0.482 6.482 21 C -0.166 4.166 22 C -0.123 4.123 23 C 0.035 3.965 24 H 0.077 0.923 25 C -0.187 4.187 26 C -0.160 4.160 27 C -0.190 4.190 28 C -0.025 4.025 29 O -0.317 6.317 30 H 0.056 0.944 31 H 0.021 0.979 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.244 0.756 44 H 0.122 0.878 45 H 0.107 0.893 46 H 0.092 0.908 47 H 0.084 0.916 48 H 0.096 0.904 49 H 0.086 0.914 50 H 0.097 0.903 51 H 0.085 0.915 52 H 0.085 0.915 53 H 0.109 0.891 54 H 0.121 0.879 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.088 -4.587 -10.845 12.174 hybrid contribution 0.210 1.759 0.309 1.798 sum -2.879 -2.829 -10.537 11.283 Atomic orbital electron populations 1.70109 1.05390 1.25099 1.55752 1.25250 0.95584 0.99354 1.01759 0.85938 0.78089 0.82391 0.77468 1.21822 1.21957 1.21469 1.18923 0.91422 0.85760 1.40512 0.93657 1.43751 1.33978 1.01982 1.51230 1.20780 0.87547 0.95535 0.89650 1.21940 0.97181 0.99228 0.98766 1.20906 0.95979 0.98877 0.98319 1.20271 0.99851 0.97689 0.95940 1.21288 0.98558 0.99681 0.97367 1.20662 0.94843 0.88351 0.89561 0.92677 1.21412 0.91795 0.94969 0.90991 1.45791 1.18242 1.57617 1.12389 1.21083 0.88467 0.78622 0.82571 1.90584 1.25001 1.58094 1.74560 1.21524 0.98274 1.01547 0.95256 1.21250 0.96931 1.01362 0.92754 1.22108 0.86754 0.92572 0.95049 0.92302 1.22181 0.99147 1.01536 0.95807 1.21613 0.95753 0.98313 1.00274 1.22173 0.98893 1.00243 0.97683 1.22765 0.90045 0.98975 0.90722 1.87919 1.30529 1.41196 1.72064 0.94405 0.97870 0.94454 0.92207 0.92063 0.91807 0.93993 0.92012 0.91981 0.91016 0.94030 0.91995 0.94315 0.75634 0.87761 0.89349 0.90777 0.91571 0.90359 0.91415 0.90254 0.91513 0.91464 0.89133 0.87872 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.82 11.13 21.65 0.24 -48.58 16 2 C -0.02 -1.19 4.87 84.86 0.41 -0.77 16 3 Si 0.93 44.11 29.58 68.60 2.03 46.14 16 4 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.24 -11.77 7.60 84.03 0.64 -11.13 16 8 H 0.05 2.41 6.76 -2.91 -0.02 2.39 16 9 N -0.59 -25.56 1.77 -674.25 -1.19 -26.75 16 10 C 0.19 8.20 4.66 86.49 0.40 8.60 16 11 C -0.13 -4.44 5.71 30.22 0.17 -4.27 16 12 C -0.10 -3.27 5.50 29.76 0.16 -3.10 16 13 C -0.10 -2.84 5.15 28.61 0.15 -2.69 16 14 C -0.13 -4.12 5.06 29.40 0.15 -3.97 16 15 C 0.17 6.41 2.19 45.99 0.10 6.51 16 16 H 0.06 1.95 8.07 -2.39 -0.02 1.93 16 17 C 0.13 5.20 4.52 86.38 0.39 5.59 16 18 N -0.69 -27.69 4.71 -463.08 -2.18 -29.87 16 19 C 0.50 20.14 7.83 87.65 0.69 20.82 16 20 O -0.60 -27.12 15.98 -3.02 -0.05 -27.17 16 21 C -0.13 -4.14 5.60 29.84 0.17 -3.97 16 22 C -0.09 -2.51 4.21 30.60 0.13 -2.38 16 23 C 0.09 2.28 2.64 30.63 0.08 2.37 16 24 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 25 C -0.15 -3.01 5.42 30.69 0.17 -2.84 16 26 C -0.12 -1.95 6.03 30.72 0.19 -1.77 16 27 C -0.15 -2.32 6.14 30.69 0.19 -2.13 16 28 C 0.05 0.96 6.84 72.01 0.49 1.45 16 29 O -0.40 -10.14 9.94 -148.98 -1.48 -11.62 16 30 H 0.25 13.11 8.31 -92.71 -0.77 12.34 16 31 H 0.00 0.15 8.01 -2.39 -0.02 0.13 16 32 H 0.04 1.86 6.47 -2.39 -0.02 1.84 16 33 H 0.06 1.84 7.32 -2.38 -0.02 1.82 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.04 1.60 7.48 -2.39 -0.02 1.58 16 37 H 0.06 1.61 7.36 -2.39 -0.02 1.59 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 1.99 8.11 -2.39 -0.02 1.97 16 40 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 42 H 0.04 1.72 6.85 -2.39 -0.02 1.70 16 43 H 0.41 16.89 8.07 -92.71 -0.75 16.14 16 44 H 0.10 3.18 7.83 -2.39 -0.02 3.16 16 45 H 0.09 2.97 8.14 -2.38 -0.02 2.95 16 46 H 0.07 2.28 8.10 -2.39 -0.02 2.26 16 47 H 0.07 2.07 8.10 -2.39 -0.02 2.05 16 48 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 53 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 54 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 55 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -59.61 413.40 2.13 -57.48 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: 0.09 Total: 34.07 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 4.68 Total: 6.31 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -3.13 Total: -105.21 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -1.53 Total: -38.79 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -59.61 2.13 -57.48 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717541534.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.085 kcal (2) G-P(sol) polarization free energy of solvation -59.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds