Wall clock time and date at job start Tue Mar 31 2020 22:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00011 * 2 1 4 4 H 1.09000 * 109.47109 * 30.00128 * 3 2 1 5 5 C 1.52993 * 109.46895 * 270.00284 * 3 2 1 6 6 C 1.53000 * 109.46886 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47404 * 59.99679 * 6 5 3 8 8 C 1.52995 * 109.47249 * 300.00573 * 7 6 5 9 9 H 1.09007 * 109.47102 * 299.99710 * 8 7 6 10 10 C 1.52998 * 109.47249 * 179.97438 * 8 7 6 11 11 C 1.50696 * 109.47237 * 64.99841 * 10 8 7 12 12 O 1.21279 * 120.00308 * 359.97438 * 11 10 8 13 13 N 1.34784 * 119.99981 * 180.28018 * 11 10 8 14 14 C 1.46494 * 120.00171 * 179.72254 * 13 11 10 15 15 C 1.53001 * 109.46225 * 59.99718 * 14 13 11 16 16 C 1.53040 * 109.46078 * 300.02362 * 14 13 11 17 17 C 1.53164 * 109.32837 * 301.35939 * 16 14 13 18 18 N 1.46926 * 108.76771 * 305.35392 * 17 16 14 19 19 C 1.36930 * 120.63219 * 233.58701 * 18 17 16 20 20 H 1.08001 * 119.99978 * 27.68919 * 19 18 17 21 21 C 1.38812 * 120.00247 * 207.69239 * 19 18 17 22 22 N 1.31624 * 119.99593 * 17.36358 * 21 19 18 23 23 Si 1.86801 * 120.00146 * 197.36705 * 21 19 18 24 24 H 1.48495 * 109.47339 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46926 * 120.00019 * 23 21 19 26 26 H 1.48505 * 109.47074 * 239.99665 * 23 21 19 27 27 C 1.46929 * 118.73785 * 53.60934 * 18 17 16 28 28 C 1.53040 * 109.45967 * 179.97438 * 14 13 11 29 29 C 1.52996 * 109.46841 * 150.00170 * 3 2 1 30 30 H 1.08996 * 109.47608 * 59.99870 * 1 2 3 31 31 H 1.09000 * 109.47364 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47056 * 299.99703 * 1 2 3 33 33 H 1.09007 * 109.47490 * 299.99712 * 5 3 2 34 34 H 1.08998 * 109.47898 * 60.00208 * 5 3 2 35 35 H 1.09002 * 109.47211 * 179.97438 * 6 5 3 36 36 H 1.09000 * 109.47052 * 299.99804 * 6 5 3 37 37 H 1.08997 * 109.47268 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.46914 * 60.00040 * 7 6 5 39 39 H 1.09002 * 109.47260 * 304.99291 * 10 8 7 40 40 H 1.09005 * 109.47276 * 184.99891 * 10 8 7 41 41 H 0.97002 * 119.99877 * 359.71765 * 13 11 10 42 42 H 1.09001 * 109.47144 * 59.99658 * 15 14 13 43 43 H 1.08997 * 109.47172 * 180.02562 * 15 14 13 44 44 H 1.09003 * 109.46809 * 299.99954 * 15 14 13 45 45 H 1.08997 * 109.49585 * 61.29526 * 16 14 13 46 46 H 1.09002 * 109.49892 * 181.39088 * 16 14 13 47 47 H 1.08993 * 109.59140 * 185.56590 * 17 16 14 48 48 H 1.09001 * 109.59190 * 65.13530 * 17 16 14 49 49 H 0.97009 * 119.99533 * 179.97438 * 22 21 19 50 50 H 1.08996 * 109.58930 * 186.60439 * 27 18 17 51 51 H 1.09001 * 109.70475 * 66.24813 * 27 18 17 52 52 H 1.09002 * 109.49648 * 178.60685 * 28 14 13 53 53 H 1.09003 * 109.49470 * 298.66282 * 28 14 13 54 54 H 1.09000 * 109.47303 * 60.00077 * 29 3 2 55 55 H 1.09002 * 109.47265 * 300.00035 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2175 1.7714 -1.4425 6 6 2.8404 3.1688 -1.4425 7 6 4.1892 3.1261 -0.7214 8 6 3.9818 2.6601 0.7210 9 1 3.3169 3.3542 1.2351 10 6 5.3306 2.6167 1.4419 11 6 5.8875 4.0128 1.5501 12 8 5.2669 4.9502 1.0951 13 7 7.0781 4.2191 2.1472 14 6 7.6223 5.5755 2.2470 15 6 6.6540 6.4563 3.0391 16 6 7.8068 6.1555 0.8428 17 6 8.7495 5.2528 0.0413 18 7 10.0000 5.0876 0.7948 19 6 11.2078 5.3627 0.2111 20 1 11.2696 6.0895 -0.5853 21 6 12.3527 4.7072 0.6429 22 7 12.2509 3.6016 1.3498 23 14 14.0377 5.3943 0.2207 24 1 13.8800 6.6366 -0.5773 25 1 14.7755 5.6998 1.4727 26 1 14.7971 4.3921 -0.5694 27 6 9.9300 4.6213 2.1863 28 6 8.9739 5.5312 2.9637 29 6 3.3588 1.2632 0.7212 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.8828 1.0775 -1.9564 34 1 1.2568 1.8015 -1.9563 35 1 2.9886 3.5006 -2.4701 36 1 2.1755 3.8630 -0.9285 37 1 4.6331 4.1215 -0.7218 38 1 4.8541 2.4319 -1.2354 39 1 6.0237 1.9917 0.8787 40 1 5.1958 2.2009 2.4405 41 1 7.5747 3.4693 2.5109 42 1 6.5220 6.0431 4.0391 43 1 7.0585 7.4657 3.1131 44 1 5.6912 6.4876 2.5290 45 1 6.8406 6.2084 0.3413 46 1 8.2348 7.1553 0.9155 47 1 8.9624 5.7120 -0.9239 48 1 8.2828 4.2794 -0.1098 49 1 13.0511 3.1434 1.6513 50 1 10.9218 4.6639 2.6364 51 1 9.5609 3.5960 2.2122 52 1 9.3909 6.5369 3.0164 53 1 8.8382 5.1404 3.9722 54 1 4.0241 0.5693 0.2074 55 1 3.2111 0.9312 1.7489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724003592.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:26 Heat of formation + Delta-G solvation = -104.129572 kcal Electronic energy + Delta-G solvation = -31495.625437 eV Core-core repulsion = 27531.292355 eV Total energy + Delta-G solvation = -3964.333083 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.51454 -40.23897 -38.90069 -37.38199 -36.01319 -33.82421 -33.31937 -32.20334 -31.57524 -31.01110 -29.06721 -27.99917 -27.27893 -25.90705 -23.94751 -23.33567 -23.26262 -22.39327 -21.28940 -20.72139 -20.06292 -18.75640 -17.94618 -17.40567 -16.84469 -16.56594 -16.38369 -16.17021 -16.00236 -15.73523 -15.56752 -15.21636 -15.02937 -14.74969 -14.65403 -14.49829 -14.25292 -14.04689 -13.79229 -13.35098 -13.28948 -13.12143 -13.04039 -12.86626 -12.82151 -12.68616 -12.59503 -12.51277 -12.40755 -12.13000 -11.97605 -11.92204 -11.90086 -11.74626 -11.51533 -11.35477 -11.27617 -11.26338 -11.18319 -10.53580 -10.37979 -10.22202 -9.80577 -8.64967 -7.87350 -5.30691 1.45186 1.47969 1.57760 1.86167 2.36975 2.51454 2.85359 3.27252 3.68507 3.70628 3.77241 3.80241 3.99140 4.07678 4.13399 4.15186 4.18163 4.26245 4.35193 4.49994 4.51854 4.53425 4.54607 4.57586 4.66698 4.68240 4.73345 4.76223 4.77822 4.84429 4.87973 4.89302 4.92961 4.93699 5.00926 5.06913 5.09049 5.18887 5.23678 5.26446 5.28022 5.31873 5.36458 5.39963 5.49733 5.52964 5.56850 5.64855 5.75591 5.84328 6.31965 6.40066 6.80172 7.16759 7.48143 7.87423 8.38894 9.18441 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018227 B = 0.002519 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.813770 B =11111.477551 C =11624.156915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.091 3.909 4 H 0.066 0.934 5 C -0.135 4.135 6 C -0.109 4.109 7 C -0.122 4.122 8 C -0.054 4.054 9 H 0.072 0.928 10 C -0.135 4.135 11 C 0.513 3.487 12 O -0.563 6.563 13 N -0.713 5.713 14 C 0.188 3.812 15 C -0.149 4.149 16 C -0.129 4.129 17 C 0.155 3.845 18 N -0.606 5.606 19 C -0.262 4.262 20 H 0.058 0.942 21 C -0.046 4.046 22 N -0.929 5.929 23 Si 0.962 3.038 24 H -0.272 1.272 25 H -0.288 1.288 26 H -0.293 1.293 27 C 0.179 3.821 28 C -0.132 4.132 29 C -0.107 4.107 30 H 0.046 0.954 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.404 0.596 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.037 0.963 48 H 0.009 0.991 49 H 0.250 0.750 50 H 0.054 0.946 51 H 0.009 0.991 52 H 0.064 0.936 53 H 0.080 0.920 54 H 0.067 0.933 55 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.166 -3.982 2.351 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.033 3.967 4 H 0.084 0.916 5 C -0.173 4.173 6 C -0.147 4.147 7 C -0.159 4.159 8 C -0.073 4.073 9 H 0.091 0.909 10 C -0.174 4.174 11 C 0.301 3.699 12 O -0.443 6.443 13 N -0.364 5.364 14 C 0.102 3.898 15 C -0.207 4.207 16 C -0.169 4.169 17 C 0.029 3.971 18 N -0.330 5.330 19 C -0.392 4.392 20 H 0.076 0.924 21 C -0.242 4.242 22 N -0.575 5.575 23 Si 0.791 3.209 24 H -0.196 1.196 25 H -0.214 1.214 26 H -0.220 1.220 27 C 0.053 3.947 28 C -0.172 4.172 29 C -0.144 4.144 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.114 0.886 40 H 0.133 0.867 41 H 0.239 0.761 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.056 0.944 48 H 0.027 0.973 49 H 0.059 0.941 50 H 0.073 0.927 51 H 0.027 0.973 52 H 0.082 0.918 53 H 0.098 0.902 54 H 0.085 0.915 55 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.361 -3.564 2.075 22.738 hybrid contribution 1.414 0.045 -0.290 1.444 sum -20.947 -3.519 1.785 21.316 Atomic orbital electron populations 1.22943 0.79954 1.03625 1.00626 1.87876 1.21073 1.28578 1.95208 1.22140 0.94910 0.84044 0.95597 0.91560 1.21993 1.01281 0.96967 0.97054 1.21403 0.96367 0.96292 1.00619 1.21697 0.97437 1.01742 0.95057 1.20688 0.94759 0.96096 0.95807 0.90916 1.21762 0.98145 0.93293 1.04237 1.20980 0.80448 0.92004 0.76439 1.90564 1.60243 1.45186 1.48281 1.46198 1.20881 1.09683 1.59674 1.20096 0.92690 0.82290 0.94676 1.22096 0.99760 0.99228 0.99601 1.22217 0.99378 0.98774 0.96556 1.20822 0.86699 0.95818 0.93757 1.44275 1.01167 1.78360 1.09192 1.19468 0.85887 1.16194 1.17663 0.92393 1.25684 1.01383 0.95801 1.01331 1.70158 1.28155 1.16909 1.42285 0.85285 0.80470 0.77854 0.77290 1.19639 1.21412 1.21994 1.20580 0.97492 0.92984 0.83604 1.22326 0.94408 1.01533 0.98898 1.21581 0.95150 0.96484 1.01208 0.93495 0.88656 0.93269 0.91975 0.91304 0.91674 0.91829 0.91865 0.92955 0.88588 0.86707 0.76080 0.91868 0.91782 0.91759 0.90858 0.92547 0.94406 0.97257 0.94062 0.92713 0.97261 0.91763 0.90163 0.91455 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.54 16 2 O -0.41 -7.89 10.35 -148.98 -1.54 -9.43 16 3 C 0.09 1.61 2.61 30.59 0.08 1.69 16 4 H 0.07 1.08 7.79 -2.39 -0.02 1.06 16 5 C -0.14 -2.40 5.54 30.59 0.17 -2.23 16 6 C -0.11 -2.12 5.92 30.59 0.18 -1.93 16 7 C -0.12 -2.80 4.94 30.59 0.15 -2.65 16 8 C -0.05 -1.10 1.84 -10.81 -0.02 -1.12 16 9 H 0.07 1.57 7.96 -2.38 -0.02 1.55 16 10 C -0.13 -2.78 5.17 29.85 0.15 -2.63 16 11 C 0.51 14.11 6.97 87.65 0.61 14.72 16 12 O -0.56 -18.10 10.19 -3.03 -0.03 -18.13 16 13 N -0.71 -20.47 4.10 -422.81 -1.73 -22.20 16 14 C 0.19 5.98 0.66 3.63 0.00 5.98 16 15 C -0.15 -4.11 8.40 71.98 0.60 -3.51 16 16 C -0.13 -4.74 4.66 30.66 0.14 -4.59 16 17 C 0.15 6.69 6.26 86.35 0.54 7.24 16 18 N -0.61 -30.00 2.99 -699.18 -2.09 -32.09 16 19 C -0.26 -14.43 9.58 84.03 0.81 -13.62 16 20 H 0.06 3.20 7.89 -2.91 -0.02 3.18 16 21 C -0.05 -2.55 4.91 84.86 0.42 -2.14 16 22 N -0.93 -53.33 11.19 21.65 0.24 -53.09 16 23 Si 0.96 44.67 29.59 68.60 2.03 46.70 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 25 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 27 C 0.18 8.04 5.03 86.36 0.43 8.48 16 28 C -0.13 -4.58 4.96 30.67 0.15 -4.43 16 29 C -0.11 -1.91 4.85 30.58 0.15 -1.76 16 30 H 0.05 0.53 7.87 -2.39 -0.02 0.51 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 0.54 8.08 -2.39 -0.02 0.52 16 33 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.07 1.08 7.87 -2.39 -0.02 1.06 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.81 5.95 -2.39 -0.01 1.79 16 38 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 39 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 41 H 0.40 10.96 7.27 -92.71 -0.67 10.28 16 42 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.06 1.93 6.17 -2.39 -0.01 1.92 16 45 H 0.07 2.70 6.20 -2.39 -0.01 2.69 16 46 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.04 1.68 7.93 -2.39 -0.02 1.66 16 48 H 0.01 0.42 7.74 -2.39 -0.02 0.40 16 49 H 0.25 13.89 8.31 -92.70 -0.77 13.12 16 50 H 0.05 2.84 6.04 -2.39 -0.01 2.83 16 51 H 0.01 0.43 6.94 -2.39 -0.02 0.41 16 52 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 53 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 54 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 55 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -64.06 406.84 2.85 -61.21 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: 0.17 Total: 28.00 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 5.80 Total: -0.97 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -3.58 Total: -107.38 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -1.57 Total: -27.56 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -64.06 2.85 -61.21 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724003592.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.917 kcal (2) G-P(sol) polarization free energy of solvation -64.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds