Wall clock time and date at job start Tue Mar 31 2020 22:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 110.43511 * 2 1 4 4 C 1.54100 * 110.48962 * 122.54479 * 2 1 3 5 5 O 1.43741 * 107.29258 * 120.70625 * 4 2 1 6 6 C 1.44375 * 106.97719 * 333.48478 * 5 4 2 7 7 H 1.09001 * 110.62248 * 281.40476 * 6 5 4 8 8 C 1.52999 * 110.61905 * 158.56274 * 6 5 4 9 9 C 1.52997 * 109.47175 * 68.58140 * 8 6 5 10 10 C 1.50704 * 109.47116 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00139 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99621 * 180.02562 * 10 9 8 13 13 C 1.48114 * 127.03757 * 0.04161 * 12 10 9 14 14 C 1.54942 * 103.25311 * 140.67207 * 13 12 10 15 15 C 1.54614 * 102.83969 * 37.37977 * 14 13 12 16 16 C 1.52993 * 110.32981 * 97.03924 * 15 14 13 17 17 C 1.53000 * 110.32524 * 219.25781 * 15 14 13 18 18 N 1.46508 * 109.46980 * 295.61939 * 17 15 14 19 19 C 1.36935 * 119.99877 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00043 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99750 * 180.02562 * 19 18 17 22 22 N 1.31614 * 119.99806 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99781 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47274 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47275 * 119.99874 * 23 21 19 26 26 H 1.48504 * 109.47024 * 240.00033 * 23 21 19 27 27 C 1.47485 * 127.02713 * 179.97438 * 12 10 9 28 28 C 1.54986 * 110.34288 * 237.30762 * 2 1 3 29 29 H 1.09007 * 109.47098 * 298.90534 * 1 2 3 30 30 H 1.09000 * 109.46961 * 58.90701 * 1 2 3 31 31 H 1.08999 * 109.47080 * 178.91179 * 1 2 3 32 32 H 1.09007 * 109.46785 * 181.09067 * 3 2 1 33 33 H 1.08995 * 109.47299 * 301.09222 * 3 2 1 34 34 H 1.09002 * 109.47138 * 61.09289 * 3 2 1 35 35 H 1.09001 * 109.87436 * 1.28054 * 4 2 1 36 36 H 1.09002 * 110.00579 * 240.20038 * 4 2 1 37 37 H 1.09012 * 109.47248 * 308.58289 * 8 6 5 38 38 H 1.08999 * 109.47512 * 188.58420 * 8 6 5 39 39 H 1.08995 * 109.47053 * 60.00008 * 9 8 6 40 40 H 1.08995 * 109.47294 * 300.00017 * 9 8 6 41 41 H 1.08998 * 110.66152 * 259.11548 * 13 12 10 42 42 H 1.08999 * 110.65867 * 22.06282 * 13 12 10 43 43 H 1.08994 * 110.73972 * 279.03665 * 14 13 12 44 44 H 1.09004 * 110.73609 * 155.71278 * 14 13 12 45 45 H 1.08999 * 109.47492 * 304.37901 * 16 15 14 46 46 H 1.09005 * 109.47303 * 64.37971 * 16 15 14 47 47 H 1.09002 * 109.47437 * 184.37673 * 16 15 14 48 48 H 1.08997 * 109.47573 * 55.61851 * 17 15 14 49 49 H 1.08994 * 109.47450 * 175.62118 * 17 15 14 50 50 H 0.96994 * 119.99912 * 359.97438 * 18 17 15 51 51 H 0.97008 * 119.99527 * 179.97438 * 22 21 19 52 52 H 1.09003 * 109.91439 * 86.12402 * 27 12 10 53 53 H 1.08996 * 109.91622 * 324.84424 * 27 12 10 54 54 H 1.08993 * 110.84448 * 143.90301 * 28 2 1 55 55 H 1.08996 * 111.04977 * 20.24110 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0642 1.4337 0.0000 4 6 2.0694 -0.7766 1.2168 5 8 2.8754 -1.8546 0.7126 6 6 2.3780 -2.1723 -0.6050 7 1 1.4713 -2.7736 -0.5384 8 6 3.4464 -2.9004 -1.4231 9 6 3.6806 -4.2922 -0.8324 10 6 4.7334 -5.0092 -1.6379 11 8 5.2456 -4.4610 -2.5908 12 7 5.1049 -6.2599 -1.2998 13 6 4.5846 -7.0719 -0.1757 14 6 4.4933 -8.4962 -0.7789 15 6 5.7454 -8.5673 -1.6833 16 6 6.8918 -9.2663 -0.9499 17 6 5.4195 -9.3018 -2.9853 18 7 5.0736 -10.6939 -2.6872 19 6 4.7436 -11.5501 -3.7036 20 1 4.7378 -11.1990 -4.7249 21 6 4.4154 -12.8690 -3.4211 22 7 4.4220 -13.2966 -2.1764 23 14 3.9645 -14.0367 -4.8076 24 1 4.0315 -13.3154 -6.1039 25 1 4.9168 -15.1759 -4.8247 26 1 2.5860 -14.5470 -4.5963 27 6 6.1118 -7.1002 -1.9745 28 6 2.0687 -0.7849 -1.2230 29 1 -0.3634 0.4968 0.8997 30 1 -0.3633 0.5307 -0.8800 31 1 -0.3633 -1.0275 -0.0195 32 1 3.1539 1.4154 -0.0196 33 1 1.6937 1.9595 -0.8800 34 1 1.7255 1.9477 0.8996 35 1 1.2391 -1.1756 1.7995 36 1 2.6767 -0.1194 1.8393 37 1 4.3763 -2.3322 -1.3940 38 1 3.1111 -2.9957 -2.4558 39 1 2.7508 -4.8604 -0.8615 40 1 4.0160 -4.1970 0.2003 41 1 5.2781 -7.0540 0.6650 42 1 3.6006 -6.7177 0.1315 43 1 3.5839 -8.6078 -1.3692 44 1 4.5406 -9.2514 0.0058 45 1 7.0857 -8.7546 -0.0072 46 1 6.6178 -10.3025 -0.7513 47 1 7.7887 -9.2399 -1.5688 48 1 4.5766 -8.8151 -3.4759 49 1 6.2875 -9.2762 -3.6440 50 1 5.0792 -11.0092 -1.7699 51 1 4.1922 -14.2181 -1.9789 52 1 7.1037 -6.8802 -1.5798 53 1 6.0880 -6.9178 -3.0488 54 1 2.9753 -0.3217 -1.6124 55 1 1.3100 -0.8662 -2.0012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724263578.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:14 Heat of formation + Delta-G solvation = -110.493262 kcal Electronic energy + Delta-G solvation = -29880.714379 eV Core-core repulsion = 25916.105346 eV Total energy + Delta-G solvation = -3964.609033 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.35585 -40.82049 -39.32854 -36.47871 -35.73654 -34.57124 -34.22963 -32.15420 -30.55710 -30.34444 -28.23934 -27.86533 -27.40002 -26.80009 -25.35228 -24.14700 -23.92554 -21.97394 -20.41538 -20.21314 -19.84910 -19.16416 -18.00926 -17.51130 -17.17520 -16.61502 -16.54941 -16.27221 -16.00434 -15.70461 -15.52087 -15.07735 -14.93495 -14.77556 -14.58953 -14.42210 -14.21219 -14.10982 -13.76806 -13.68694 -13.48781 -13.30567 -13.05562 -12.99365 -12.90573 -12.78414 -12.65793 -12.58680 -12.39209 -12.23284 -12.13142 -12.07364 -12.06939 -11.65746 -11.59014 -11.55523 -11.49045 -11.38544 -11.38434 -10.95401 -10.85260 -10.52575 -9.72383 -8.98329 -7.95380 -5.22697 1.46890 1.47199 1.57213 1.61530 1.96786 2.55423 2.92927 3.32887 3.38180 3.49036 3.66144 3.68012 3.78117 3.82177 3.89162 3.97153 4.11527 4.22886 4.27020 4.29693 4.34685 4.35226 4.40930 4.44422 4.51148 4.63037 4.70616 4.72398 4.74251 4.78005 4.78901 4.79933 4.82321 4.90104 4.93979 4.97539 5.00530 5.02791 5.06522 5.10243 5.12756 5.21450 5.23492 5.25966 5.28173 5.31380 5.39587 5.42439 5.49437 5.53524 6.01279 6.27589 6.56287 7.12893 7.35173 8.09521 8.36917 9.27866 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020603 B = 0.001845 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.670395 B =15171.731331 C =15597.919513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 C -0.136 4.136 4 C 0.050 3.950 5 O -0.394 6.394 6 C 0.079 3.921 7 H 0.082 0.918 8 C -0.092 4.092 9 C -0.123 4.123 10 C 0.524 3.476 11 O -0.591 6.591 12 N -0.621 5.621 13 C 0.106 3.894 14 C -0.117 4.117 15 C -0.072 4.072 16 C -0.125 4.125 17 C 0.167 3.833 18 N -0.734 5.734 19 C -0.247 4.247 20 H 0.068 0.932 21 C -0.070 4.070 22 N -0.964 5.964 23 Si 0.970 3.030 24 H -0.272 1.272 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.120 3.880 28 C -0.142 4.142 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.057 0.943 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.046 0.954 47 H 0.053 0.947 48 H 0.007 0.993 49 H 0.013 0.987 50 H 0.380 0.620 51 H 0.252 0.748 52 H 0.080 0.920 53 H 0.055 0.945 54 H 0.072 0.928 55 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.362 28.650 10.514 31.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 C -0.193 4.193 4 C -0.027 4.027 5 O -0.313 6.313 6 C 0.022 3.978 7 H 0.100 0.900 8 C -0.130 4.130 9 C -0.163 4.163 10 C 0.315 3.685 11 O -0.472 6.472 12 N -0.354 5.354 13 C -0.015 4.015 14 C -0.155 4.155 15 C -0.073 4.073 16 C -0.183 4.183 17 C 0.041 3.959 18 N -0.378 5.378 19 C -0.379 4.379 20 H 0.086 0.914 21 C -0.262 4.262 22 N -0.614 5.614 23 Si 0.799 3.201 24 H -0.196 1.196 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.003 4.003 28 C -0.180 4.180 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.075 0.925 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.025 0.975 49 H 0.031 0.969 50 H 0.214 0.786 51 H 0.061 0.939 52 H 0.098 0.902 53 H 0.073 0.927 54 H 0.090 0.910 55 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.975 28.905 9.922 31.139 hybrid contribution -0.173 -1.173 -0.837 1.452 sum -6.148 27.732 9.085 29.823 Atomic orbital electron populations 1.21870 0.92482 1.02269 1.02807 1.21987 0.97134 0.96569 0.94320 1.21833 1.00636 0.94112 1.02725 1.23442 0.95031 0.88353 0.95860 1.88856 1.57343 1.53391 1.31757 1.23177 0.96143 0.95997 0.82456 0.89990 1.21313 0.98978 0.93862 0.98849 1.21617 0.97866 0.96216 1.00561 1.21056 0.83308 0.79792 0.84324 1.90670 1.58302 1.66792 1.31431 1.48974 1.40743 1.14071 1.31613 1.22772 1.01384 0.88677 0.88706 1.22707 0.96736 0.97213 0.98891 1.21506 0.97040 0.93235 0.95519 1.21736 0.96413 1.00023 1.00097 1.20773 0.95843 0.84686 0.94643 1.42461 1.82415 1.06287 1.06600 1.19614 1.37089 0.91746 0.89412 0.91418 1.25464 1.03441 0.98786 0.98541 1.69794 1.56858 1.16322 1.18449 0.85131 0.77029 0.78911 0.79018 1.19631 1.21896 1.21884 1.21983 0.92210 0.88446 0.97670 1.23329 1.02063 0.94606 0.97993 0.91516 0.91711 0.92423 0.92989 0.91844 0.91434 0.91575 0.89585 0.92128 0.90322 0.87013 0.87146 0.88499 0.87690 0.92452 0.89407 0.90246 0.93452 0.92796 0.97517 0.96884 0.78621 0.93929 0.90176 0.92653 0.90958 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.25 71.98 0.59 -0.52 16 2 C -0.10 -1.07 0.99 -51.13 -0.05 -1.12 16 3 C -0.14 -1.26 8.28 71.98 0.60 -0.66 16 4 C 0.05 0.64 7.04 72.35 0.51 1.15 16 5 O -0.39 -7.13 10.98 -148.98 -1.64 -8.77 16 6 C 0.08 1.22 3.30 31.28 0.10 1.32 16 7 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 8 C -0.09 -1.77 4.27 30.59 0.13 -1.64 16 9 C -0.12 -2.34 4.56 29.85 0.14 -2.21 16 10 C 0.52 14.43 7.89 87.66 0.69 15.12 16 11 O -0.59 -21.12 16.32 -3.04 -0.05 -21.17 16 12 N -0.62 -16.18 3.29 -809.43 -2.66 -18.84 16 13 C 0.11 2.14 6.95 86.73 0.60 2.75 16 14 C -0.12 -3.24 5.73 31.81 0.18 -3.06 16 15 C -0.07 -2.24 0.67 -51.30 -0.03 -2.27 16 16 C -0.13 -3.65 8.05 71.98 0.58 -3.07 16 17 C 0.17 6.91 4.85 86.38 0.42 7.33 16 18 N -0.73 -36.85 5.12 -343.44 -1.76 -38.61 16 19 C -0.25 -13.91 9.99 84.03 0.84 -13.07 16 20 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 21 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 22 N -0.96 -57.91 13.06 21.65 0.28 -57.62 16 23 Si 0.97 46.35 29.55 68.60 2.03 48.38 16 24 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 27 C 0.12 3.50 6.28 86.52 0.54 4.04 16 28 C -0.14 -1.84 5.71 31.96 0.18 -1.66 16 29 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.07 0.74 7.69 -2.39 -0.02 0.72 16 36 H 0.09 1.01 7.70 -2.39 -0.02 1.00 16 37 H 0.06 1.38 8.10 -2.38 -0.02 1.36 16 38 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 39 H 0.11 1.70 7.90 -2.39 -0.02 1.68 16 40 H 0.11 1.87 7.99 -2.39 -0.02 1.85 16 41 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.10 1.61 7.23 -2.39 -0.02 1.59 16 43 H 0.06 1.85 7.84 -2.39 -0.02 1.83 16 44 H 0.09 2.39 7.85 -2.38 -0.02 2.37 16 45 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.05 1.64 6.75 -2.38 -0.02 1.63 16 47 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.01 0.30 8.11 -2.39 -0.02 0.28 16 49 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.38 19.66 6.18 -92.71 -0.57 19.09 16 51 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 52 H 0.08 2.10 7.68 -2.39 -0.02 2.09 16 53 H 0.05 1.85 7.59 -2.39 -0.02 1.83 16 54 H 0.07 1.05 7.79 -2.39 -0.02 1.03 16 55 H 0.09 0.99 7.86 -2.39 -0.02 0.97 16 Total: -1.00 -70.86 426.02 2.96 -67.91 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: 0.26 Total: 29.81 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 6.49 Total: -1.08 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -4.14 Total: -115.07 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -1.69 Total: -29.94 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -70.86 2.96 -67.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724263578.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.587 kcal (2) G-P(sol) polarization free energy of solvation -70.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds