Wall clock time and date at job start Tue Mar 31 2020 22:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 110.56578 * 2 1 4 4 C 1.54474 * 110.51675 * 237.32180 * 2 1 3 5 5 O 1.44430 * 104.80493 * 265.33576 * 4 2 1 6 6 C 1.44425 * 105.27295 * 319.48610 * 5 4 2 7 7 H 1.09010 * 110.45955 * 281.63327 * 6 5 4 8 8 C 1.52995 * 110.37395 * 159.34588 * 6 5 4 9 9 C 1.52996 * 109.47472 * 69.61248 * 8 6 5 10 10 C 1.50696 * 109.47327 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00259 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00011 * 180.02562 * 10 9 8 13 13 C 1.47423 * 125.65015 * 359.95697 * 12 10 9 14 14 C 1.55122 * 104.94461 * 204.04304 * 13 12 10 15 15 C 1.55165 * 101.48361 * 323.22063 * 14 13 12 16 16 C 1.52999 * 110.72040 * 276.83089 * 15 14 13 17 17 C 1.53001 * 110.71592 * 153.73748 * 15 14 13 18 18 N 1.46496 * 109.47205 * 63.84491 * 17 15 14 19 19 C 1.36945 * 119.99718 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48499 * 109.46981 * 150.00382 * 23 21 19 27 27 C 1.47028 * 125.64956 * 180.02562 * 12 10 9 28 28 C 1.54476 * 104.80258 * 40.50806 * 6 5 4 29 29 H 1.08999 * 109.47406 * 297.32407 * 1 2 3 30 30 H 1.08997 * 109.46941 * 57.32070 * 1 2 3 31 31 H 1.08997 * 109.46841 * 177.32035 * 1 2 3 32 32 H 1.09000 * 109.47557 * 182.67356 * 3 2 1 33 33 H 1.08999 * 109.47197 * 302.68035 * 3 2 1 34 34 H 1.09005 * 109.46847 * 62.67829 * 3 2 1 35 35 H 1.09002 * 110.37014 * 24.16483 * 4 2 1 36 36 H 1.08993 * 110.37891 * 146.38915 * 4 2 1 37 37 H 1.09002 * 109.46828 * 309.61682 * 8 6 5 38 38 H 1.08995 * 109.47246 * 189.61756 * 8 6 5 39 39 H 1.09002 * 109.46740 * 60.00380 * 9 8 6 40 40 H 1.08995 * 109.47299 * 300.00474 * 9 8 6 41 41 H 1.09001 * 110.36875 * 323.00484 * 13 12 10 42 42 H 1.09001 * 110.36551 * 85.32797 * 13 12 10 43 43 H 1.09001 * 111.16194 * 205.13497 * 14 13 12 44 44 H 1.09002 * 110.94073 * 81.21448 * 14 13 12 45 45 H 1.09001 * 109.47120 * 296.16077 * 16 15 14 46 46 H 1.09002 * 109.47167 * 56.15226 * 16 15 14 47 47 H 1.08991 * 109.47291 * 176.15703 * 16 15 14 48 48 H 1.08997 * 109.46922 * 303.83532 * 17 15 14 49 49 H 1.09000 * 109.46483 * 183.84352 * 17 15 14 50 50 H 0.96996 * 120.00499 * 359.97438 * 18 17 15 51 51 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 52 52 H 1.08995 * 109.88042 * 59.48237 * 27 12 10 53 53 H 1.09000 * 110.00623 * 298.39168 * 27 12 10 54 54 H 1.09002 * 110.51197 * 94.67253 * 28 6 5 55 55 H 1.09008 * 110.51137 * 217.23913 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0674 1.4325 0.0000 4 6 2.0714 -0.7811 -1.2178 5 8 2.3070 -2.1177 -0.7238 6 6 2.8757 -1.9422 0.5921 7 1 3.9305 -1.6769 0.5191 8 6 2.7042 -3.2168 1.4209 9 6 3.6048 -4.3173 0.8564 10 6 3.4353 -5.5729 1.6723 11 8 2.6693 -5.5864 2.6125 12 7 4.1351 -6.6808 1.3572 13 6 5.0952 -6.8034 0.2452 14 6 5.1395 -8.3196 -0.0796 15 6 5.0151 -8.9426 1.3360 16 6 6.3787 -8.9906 2.0281 17 6 4.3995 -10.3412 1.2596 18 7 5.2946 -11.2286 0.5130 19 6 4.9508 -12.5394 0.3154 20 1 4.0201 -12.9189 0.7103 21 6 5.7986 -13.3801 -0.3925 22 7 6.9332 -12.9176 -0.8734 23 14 5.3300 -15.1683 -0.6614 24 1 5.8541 -15.9911 0.4582 25 1 3.8510 -15.2897 -0.7150 26 1 5.9126 -15.6455 -1.9413 27 6 4.0663 -7.9678 2.0648 28 6 2.0714 -0.7813 1.2180 29 1 -0.3634 0.4717 0.9130 30 1 -0.3633 0.5549 -0.8650 31 1 -0.3633 -1.0265 -0.0480 32 1 3.1562 1.4122 -0.0479 33 1 1.6755 1.9676 -0.8650 34 1 1.7534 1.9384 0.9131 35 1 1.3312 -0.7973 -2.0178 36 1 3.0013 -0.3360 -1.5713 37 1 1.6643 -3.5408 1.3780 38 1 2.9801 -3.0169 2.4562 39 1 4.6447 -3.9933 0.8992 40 1 3.3288 -4.5171 -0.1790 41 1 4.7475 -6.2392 -0.6202 42 1 6.0807 -6.4557 0.5549 43 1 6.0857 -8.5947 -0.5456 44 1 4.2975 -8.6080 -0.7088 45 1 7.0451 -9.6506 1.4727 46 1 6.8050 -7.9879 2.0610 47 1 6.2577 -9.3674 3.0437 48 1 3.4359 -10.2869 0.7530 49 1 4.2585 -10.7316 2.2675 50 1 6.1307 -10.8878 0.1586 51 1 7.5258 -13.5052 -1.3678 52 1 3.0468 -8.3521 2.0369 53 1 4.3870 -7.8424 3.0990 54 1 1.2490 -1.1676 1.8203 55 1 2.7215 -0.1484 1.8223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724263580.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:20 Heat of formation + Delta-G solvation = -111.860534 kcal Electronic energy + Delta-G solvation = -29812.429411 eV Core-core repulsion = 25847.761089 eV Total energy + Delta-G solvation = -3964.668322 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.39625 -40.81467 -39.32307 -36.48577 -35.71058 -34.55812 -34.21453 -32.14336 -30.58970 -30.30709 -28.23551 -27.98596 -27.37021 -26.79129 -25.34931 -24.10891 -23.86329 -21.95513 -20.41504 -20.26427 -19.86720 -19.16362 -17.97744 -17.52408 -16.97013 -16.73348 -16.48031 -16.27798 -16.18691 -15.66990 -15.43539 -15.26693 -14.89543 -14.87480 -14.57813 -14.39979 -14.09969 -13.99602 -13.77540 -13.66034 -13.58416 -13.32467 -13.02217 -12.97705 -12.90484 -12.81622 -12.68322 -12.62584 -12.34614 -12.19316 -12.14844 -12.09800 -12.05990 -11.64301 -11.59111 -11.52367 -11.50600 -11.42927 -11.40483 -10.93006 -10.86083 -10.57717 -9.67659 -8.96952 -7.94013 -5.21343 1.48279 1.49046 1.57482 1.61338 1.96866 2.56758 2.98250 3.30772 3.39606 3.51091 3.60851 3.69346 3.78307 3.82459 3.92284 3.95975 4.13656 4.21907 4.24817 4.30427 4.32273 4.35778 4.40287 4.44513 4.54797 4.62414 4.69083 4.70134 4.73146 4.75915 4.79413 4.82411 4.84887 4.88795 4.94808 4.97868 5.02546 5.04638 5.06776 5.10495 5.12280 5.20483 5.22102 5.27863 5.31070 5.32736 5.34081 5.41461 5.48171 5.51095 5.97820 6.28704 6.53044 7.12668 7.36478 8.10810 8.37598 9.29091 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026405 B = 0.001744 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.139291 B =16049.737734 C =16314.035915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 C -0.135 4.135 4 C 0.048 3.952 5 O -0.393 6.393 6 C 0.077 3.923 7 H 0.086 0.914 8 C -0.092 4.092 9 C -0.123 4.123 10 C 0.521 3.479 11 O -0.590 6.590 12 N -0.616 5.616 13 C 0.105 3.895 14 C -0.116 4.116 15 C -0.070 4.070 16 C -0.124 4.124 17 C 0.168 3.832 18 N -0.734 5.734 19 C -0.247 4.247 20 H 0.070 0.930 21 C -0.070 4.070 22 N -0.964 5.964 23 Si 0.970 3.030 24 H -0.288 1.288 25 H -0.274 1.274 26 H -0.294 1.294 27 C 0.124 3.876 28 C -0.143 4.143 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.119 0.881 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.073 0.927 47 H 0.052 0.948 48 H 0.014 0.986 49 H 0.017 0.983 50 H 0.380 0.620 51 H 0.252 0.748 52 H 0.053 0.947 53 H 0.068 0.932 54 H 0.069 0.931 55 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 32.058 1.253 32.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 C -0.192 4.192 4 C -0.029 4.029 5 O -0.313 6.313 6 C 0.020 3.980 7 H 0.104 0.896 8 C -0.130 4.130 9 C -0.163 4.163 10 C 0.312 3.688 11 O -0.471 6.471 12 N -0.349 5.349 13 C -0.017 4.017 14 C -0.154 4.154 15 C -0.071 4.071 16 C -0.181 4.181 17 C 0.040 3.960 18 N -0.378 5.378 19 C -0.379 4.379 20 H 0.088 0.912 21 C -0.262 4.262 22 N -0.615 5.615 23 Si 0.799 3.201 24 H -0.215 1.215 25 H -0.199 1.199 26 H -0.220 1.220 27 C 0.001 3.999 28 C -0.181 4.181 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.137 0.863 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.092 0.908 47 H 0.071 0.929 48 H 0.032 0.968 49 H 0.035 0.965 50 H 0.213 0.787 51 H 0.060 0.940 52 H 0.071 0.929 53 H 0.087 0.913 54 H 0.087 0.913 55 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.579 31.778 1.668 32.495 hybrid contribution -0.040 -1.404 -0.146 1.412 sum -6.620 30.375 1.523 31.125 Atomic orbital electron populations 1.21834 0.93578 1.01473 1.02476 1.21959 0.96671 0.96725 0.94658 1.21823 1.01149 0.93544 1.02684 1.23677 1.00659 0.82109 0.96436 1.89133 1.83399 1.27242 1.31492 1.23079 0.97882 0.94393 0.82680 0.89600 1.21347 0.99767 0.92835 0.99082 1.21636 1.03685 0.90797 1.00161 1.21083 0.78485 0.84750 0.84461 1.90671 1.39100 1.84952 1.32360 1.48637 1.42976 1.10960 1.32289 1.22575 0.93267 0.96524 0.89292 1.22797 1.03116 0.94036 0.95411 1.21628 0.95928 0.93328 0.96212 1.21669 0.94689 1.01937 0.99793 1.20685 0.92380 0.88748 0.94140 1.42423 1.22976 1.07270 1.65098 1.19591 1.02950 0.87798 1.27536 0.91217 1.25459 0.97162 1.02093 1.01508 1.69788 1.12539 1.36205 1.42939 0.85200 0.77604 0.80570 0.76726 1.21515 1.19892 1.22015 1.21808 0.98990 0.83085 0.96065 1.23145 1.00417 0.96664 0.97883 0.92016 0.91602 0.93660 0.91823 0.91707 0.91851 0.89029 0.91074 0.92699 0.89943 0.86267 0.87773 0.88240 0.88897 0.89578 0.91853 0.93248 0.90786 0.92871 0.96801 0.96537 0.78684 0.93965 0.92889 0.91344 0.91251 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.29 71.98 0.60 -0.92 16 2 C -0.10 -1.06 1.05 -51.17 -0.05 -1.12 16 3 C -0.13 -0.95 8.32 71.98 0.60 -0.35 16 4 C 0.05 0.60 6.74 72.48 0.49 1.09 16 5 O -0.39 -7.13 11.13 -148.98 -1.66 -8.79 16 6 C 0.08 1.11 3.25 31.09 0.10 1.21 16 7 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 8 C -0.09 -1.69 4.13 30.59 0.13 -1.56 16 9 C -0.12 -2.22 4.64 29.85 0.14 -2.09 16 10 C 0.52 13.87 7.85 87.66 0.69 14.55 16 11 O -0.59 -20.48 16.31 -3.04 -0.05 -20.53 16 12 N -0.62 -15.80 3.33 -811.38 -2.70 -18.50 16 13 C 0.11 2.15 6.38 86.93 0.55 2.71 16 14 C -0.12 -3.22 5.60 32.06 0.18 -3.04 16 15 C -0.07 -2.18 0.61 -50.99 -0.03 -2.21 16 16 C -0.12 -3.65 8.25 71.98 0.59 -3.06 16 17 C 0.17 6.76 5.06 86.38 0.44 7.19 16 18 N -0.73 -36.42 5.15 -343.47 -1.77 -38.19 16 19 C -0.25 -13.78 9.99 84.03 0.84 -12.94 16 20 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 21 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 22 N -0.96 -57.72 13.06 21.65 0.28 -57.43 16 23 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 26 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 27 C 0.12 3.66 6.05 86.72 0.52 4.18 16 28 C -0.14 -1.73 5.92 31.61 0.19 -1.54 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.39 8.08 -2.39 -0.02 0.37 16 33 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 35 H 0.09 1.08 7.87 -2.39 -0.02 1.06 16 36 H 0.07 0.71 7.82 -2.39 -0.02 0.69 16 37 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 38 H 0.08 1.50 8.10 -2.39 -0.02 1.48 16 39 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.10 1.83 7.71 -2.39 -0.02 1.81 16 41 H 0.10 1.61 7.48 -2.39 -0.02 1.59 16 42 H 0.09 1.54 7.74 -2.39 -0.02 1.52 16 43 H 0.09 2.48 8.04 -2.39 -0.02 2.46 16 44 H 0.06 1.96 8.05 -2.39 -0.02 1.94 16 45 H 0.05 1.70 6.90 -2.39 -0.02 1.68 16 46 H 0.07 1.77 7.49 -2.39 -0.02 1.75 16 47 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.38 19.47 6.29 -92.71 -0.58 18.89 16 51 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 52 H 0.05 1.72 7.82 -2.39 -0.02 1.70 16 53 H 0.07 2.00 7.84 -2.39 -0.02 1.98 16 54 H 0.07 0.98 7.46 -2.39 -0.02 0.96 16 55 H 0.09 0.83 7.74 -2.38 -0.02 0.81 16 Total: -1.00 -69.99 425.56 2.82 -67.16 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: 0.25 Total: 29.52 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 6.44 Total: -1.38 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -4.19 Total: -114.12 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -1.71 Total: -29.32 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -69.99 2.82 -67.16 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724263580.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.697 kcal (2) G-P(sol) polarization free energy of solvation -69.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds