Wall clock time and date at job start Tue Mar 31 2020 22:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.45789 * 2 1 4 4 N 1.46502 * 109.46957 * 60.03194 * 3 2 1 5 5 C 1.34772 * 119.99537 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00236 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99831 * 180.27696 * 5 4 3 8 8 C 1.52997 * 109.47222 * 179.72664 * 7 5 4 9 9 C 1.52997 * 109.47225 * 179.97438 * 8 7 5 10 10 H 1.09007 * 109.48283 * 305.02352 * 9 8 7 11 11 C 1.53093 * 109.48399 * 184.99810 * 9 8 7 12 12 C 1.53181 * 109.16466 * 182.40772 * 11 9 8 13 13 C 1.53178 * 109.03422 * 56.98170 * 12 11 9 14 14 C 1.53087 * 109.16370 * 303.01879 * 13 12 11 15 15 O 1.42900 * 109.41703 * 57.60982 * 14 13 12 16 16 C 1.53037 * 109.45237 * 119.97000 * 2 1 3 17 17 C 1.53196 * 109.31301 * 58.64434 * 16 2 1 18 18 N 1.46927 * 108.77470 * 54.63534 * 17 16 2 19 19 C 1.36941 * 120.62856 * 126.36559 * 18 17 16 20 20 H 1.07999 * 119.99950 * 331.86840 * 19 18 17 21 21 C 1.38815 * 119.99940 * 151.86472 * 19 18 17 22 22 N 1.31618 * 119.99637 * 343.06570 * 21 19 18 23 23 Si 1.86796 * 120.00149 * 163.06313 * 21 19 18 24 24 H 1.48499 * 109.47074 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47039 * 120.00107 * 23 21 19 26 26 H 1.48497 * 109.47307 * 240.00094 * 23 21 19 27 27 C 1.46925 * 118.74173 * 306.39424 * 18 17 16 28 28 C 1.53044 * 109.45635 * 240.03135 * 2 1 3 29 29 H 1.09000 * 109.47378 * 59.99837 * 1 2 3 30 30 H 1.08996 * 109.47293 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46981 * 299.99284 * 1 2 3 32 32 H 1.08998 * 109.47085 * 300.03068 * 3 2 1 33 33 H 1.09001 * 109.46788 * 180.02562 * 3 2 1 34 34 H 0.96993 * 119.99918 * 359.97438 * 4 3 2 35 35 H 1.09003 * 109.46600 * 299.72381 * 7 5 4 36 36 H 1.08999 * 109.47364 * 59.72019 * 7 5 4 37 37 H 1.08994 * 109.47148 * 299.99599 * 8 7 5 38 38 H 1.09005 * 109.47233 * 59.99770 * 8 7 5 39 39 H 1.09002 * 109.52198 * 302.31793 * 11 9 8 40 40 H 1.09005 * 109.51916 * 62.43992 * 11 9 8 41 41 H 1.08999 * 109.54358 * 176.84524 * 12 11 9 42 42 H 1.08996 * 109.54423 * 297.02824 * 12 11 9 43 43 H 1.08996 * 109.52325 * 62.92512 * 13 12 11 44 44 H 1.09000 * 109.51877 * 183.04895 * 13 12 11 45 45 H 1.09001 * 109.48464 * 177.59317 * 14 13 12 46 46 H 1.09005 * 109.48297 * 297.61664 * 14 13 12 47 47 H 1.08997 * 109.49824 * 178.59576 * 16 2 1 48 48 H 1.09006 * 109.49839 * 298.69626 * 16 2 1 49 49 H 1.09002 * 109.58637 * 294.84847 * 17 16 2 50 50 H 1.08996 * 109.70217 * 174.49531 * 17 16 2 51 51 H 0.97002 * 119.99762 * 179.97438 * 22 21 19 52 52 H 1.09004 * 109.57998 * 293.82198 * 27 18 17 53 53 H 1.08994 * 109.70585 * 173.46209 * 27 18 17 54 54 H 1.09003 * 109.49828 * 61.30663 * 28 2 1 55 55 H 1.08993 * 109.49757 * 181.40781 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5518 2.1329 1.1966 5 6 1.8777 3.4231 1.4101 6 8 2.5744 4.0128 0.6115 7 6 1.3810 4.1313 2.6441 8 6 1.8957 5.5721 2.6472 9 6 1.3909 6.2914 3.8997 10 1 0.3044 6.2176 3.9482 11 6 1.8005 7.7654 3.8420 12 6 1.3443 8.4646 5.1263 13 6 1.9500 7.7397 6.3321 14 6 1.5346 6.2668 6.2936 15 8 1.9623 5.6847 5.0606 16 6 2.0397 -0.7209 1.2501 17 6 1.4991 -2.1542 1.2642 18 7 1.8619 -2.8090 0.0000 19 6 2.5261 -4.0065 0.0000 20 1 3.1738 -4.2647 0.8248 21 6 2.3669 -4.8886 -1.0600 22 7 1.3524 -4.7476 -1.8866 23 14 3.5923 -6.2755 -1.3132 24 1 4.6325 -6.2163 -0.2550 25 1 2.8859 -7.5797 -1.2399 26 1 4.2323 -6.1334 -2.6456 27 6 1.4992 -2.1542 -1.2643 28 6 2.0398 -0.7208 -1.2501 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.6758 1.9565 -0.8897 33 1 3.1297 1.4428 -0.0005 34 1 0.9943 1.6613 1.8350 35 1 0.2910 4.1349 2.6470 36 1 1.7449 3.6136 3.5316 37 1 2.9856 5.5686 2.6443 38 1 1.5317 6.0899 1.7597 39 1 2.8844 7.8390 3.7525 40 1 1.3307 8.2405 2.9808 41 1 1.6817 9.5011 5.1167 42 1 0.2566 8.4358 5.1905 43 1 3.0368 7.8128 6.2929 44 1 1.5871 8.1976 7.2523 45 1 1.9977 5.7365 7.1257 46 1 0.4500 6.1926 6.3738 47 1 3.1294 -0.7432 1.2383 48 1 1.6956 -0.1935 2.1399 49 1 0.4141 -2.1345 1.3673 50 1 1.9354 -2.7033 2.0986 51 1 1.2413 -5.3637 -2.6275 52 1 0.4143 -2.1345 -1.3674 53 1 1.9359 -2.7011 -2.0999 54 1 1.6958 -0.1935 -2.1399 55 1 3.1295 -0.7432 -1.2383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724302045.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:36 Heat of formation + Delta-G solvation = -112.828058 kcal Electronic energy + Delta-G solvation = -30099.327205 eV Core-core repulsion = 26134.616927 eV Total energy + Delta-G solvation = -3964.710277 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 5.95 seconds Orbital eigenvalues (eV) -41.13602 -40.35935 -39.72946 -36.61384 -34.87980 -34.57789 -34.50190 -32.80996 -31.51858 -31.03680 -28.74097 -28.08988 -26.65851 -25.58790 -24.67245 -23.87408 -22.76466 -22.19579 -21.30756 -20.99446 -19.61726 -18.43070 -17.92969 -17.48312 -17.02353 -16.78134 -16.61910 -16.48527 -15.80433 -15.53859 -15.49916 -15.36535 -15.16654 -15.00379 -14.73036 -14.64952 -14.43193 -14.11972 -14.00688 -13.57018 -13.40062 -13.03462 -13.00899 -12.96028 -12.77351 -12.68543 -12.57654 -12.31472 -12.19000 -12.12475 -12.06395 -11.89183 -11.81515 -11.80319 -11.55564 -11.49363 -11.16802 -11.14948 -11.02303 -10.79168 -10.49111 -10.29849 -10.01023 -8.62089 -7.85907 -5.29943 1.44704 1.47321 1.57072 1.72268 2.29005 2.51648 2.89328 3.28263 3.69350 3.73069 3.79730 3.84268 3.86447 3.96500 3.97860 4.01481 4.08614 4.19234 4.35145 4.39625 4.42250 4.51132 4.54653 4.60030 4.63461 4.71695 4.75511 4.80132 4.82211 4.84992 4.85837 4.90535 4.96268 4.98729 5.04777 5.07667 5.11820 5.15286 5.16945 5.22117 5.25644 5.30773 5.34555 5.41675 5.43294 5.50045 5.54014 5.57684 5.67913 5.85344 6.38284 6.41645 6.63084 7.17846 7.32628 7.90759 8.41187 9.19963 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.027726 B = 0.001816 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.639323 B =15414.042579 C =15836.088121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.053 4.053 3 C 0.142 3.858 4 N -0.714 5.714 5 C 0.507 3.493 6 O -0.592 6.592 7 C -0.128 4.128 8 C -0.093 4.093 9 C 0.093 3.907 10 H 0.074 0.926 11 C -0.153 4.153 12 C -0.122 4.122 13 C -0.157 4.157 14 C 0.055 3.945 15 O -0.399 6.399 16 C -0.110 4.110 17 C 0.141 3.859 18 N -0.610 5.610 19 C -0.259 4.259 20 H 0.063 0.937 21 C -0.051 4.051 22 N -0.933 5.933 23 Si 0.962 3.038 24 H -0.269 1.269 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.181 3.819 28 C -0.120 4.120 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.413 0.587 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.061 0.939 47 H 0.046 0.954 48 H 0.085 0.915 49 H 0.025 0.975 50 H 0.048 0.952 51 H 0.249 0.751 52 H 0.007 0.993 53 H 0.046 0.954 54 H 0.065 0.935 55 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.524 26.265 15.717 30.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.053 4.053 3 C 0.017 3.983 4 N -0.367 5.367 5 C 0.296 3.704 6 O -0.472 6.472 7 C -0.168 4.168 8 C -0.131 4.131 9 C 0.035 3.965 10 H 0.092 0.908 11 C -0.190 4.190 12 C -0.159 4.159 13 C -0.194 4.194 14 C -0.022 4.022 15 O -0.319 6.319 16 C -0.149 4.149 17 C 0.016 3.984 18 N -0.333 5.333 19 C -0.390 4.390 20 H 0.081 0.919 21 C -0.246 4.246 22 N -0.579 5.579 23 Si 0.791 3.209 24 H -0.193 1.193 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.055 3.945 28 C -0.160 4.160 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.251 0.749 35 H 0.137 0.863 36 H 0.127 0.873 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.117 0.883 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.103 0.897 49 H 0.043 0.957 50 H 0.066 0.934 51 H 0.058 0.942 52 H 0.025 0.975 53 H 0.064 0.936 54 H 0.084 0.916 55 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.942 26.409 15.037 30.644 hybrid contribution 0.406 -1.225 -0.432 1.361 sum -3.536 25.184 14.605 29.326 Atomic orbital electron populations 1.21867 0.93463 1.01764 1.02196 1.20538 0.96554 0.92387 0.95836 1.21209 0.98007 0.91248 0.87813 1.46031 1.53414 1.11861 1.25404 1.21350 0.79321 0.81711 0.88067 1.90678 1.40164 1.67133 1.49272 1.21637 1.03841 0.96219 0.95106 1.21306 1.01202 0.94174 0.96369 1.22153 0.97369 0.91871 0.85065 0.90793 1.22212 1.01808 0.95679 0.99335 1.21602 1.01088 0.99567 0.93684 1.22193 1.01327 0.96384 0.99531 1.22717 0.99699 0.93526 0.86231 1.87926 1.70691 1.58866 1.14434 1.21929 0.99838 0.96083 0.97042 1.21089 0.96738 0.92509 0.88087 1.44284 1.66935 1.20865 1.01238 1.19519 1.18810 0.94286 1.06336 0.91940 1.25736 0.98722 1.00022 1.00149 1.70176 1.29495 1.39603 1.18670 0.85283 0.79077 0.79069 0.77491 1.19302 1.21877 1.21876 1.20543 0.95431 0.89673 0.88817 1.22027 0.99750 0.97137 0.97082 0.92579 0.93439 0.90711 0.92162 0.93306 0.74921 0.86304 0.87332 0.92720 0.90051 0.92304 0.90010 0.90947 0.90885 0.92156 0.89436 0.88328 0.92107 0.93545 0.89711 0.95675 0.93390 0.94218 0.97472 0.93569 0.91633 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 7.54 71.98 0.54 -3.11 16 2 C -0.05 -1.56 0.53 -52.15 -0.03 -1.58 16 3 C 0.14 3.84 4.56 86.38 0.39 4.23 16 4 N -0.71 -15.48 4.95 -463.06 -2.29 -17.77 16 5 C 0.51 12.01 7.83 87.66 0.69 12.70 16 6 O -0.59 -19.36 15.98 -3.04 -0.05 -19.41 16 7 C -0.13 -2.02 5.60 29.85 0.17 -1.86 16 8 C -0.09 -1.60 4.21 30.59 0.13 -1.47 16 9 C 0.09 1.27 2.64 30.62 0.08 1.36 16 10 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 11 C -0.15 -1.88 5.42 30.69 0.17 -1.71 16 12 C -0.12 -1.14 6.03 30.71 0.19 -0.96 16 13 C -0.16 -1.50 6.14 30.68 0.19 -1.31 16 14 C 0.05 0.60 6.84 72.01 0.49 1.09 16 15 O -0.40 -6.56 9.94 -148.98 -1.48 -8.04 16 16 C -0.11 -3.38 4.75 30.67 0.15 -3.24 16 17 C 0.14 5.53 6.05 86.36 0.52 6.06 16 18 N -0.61 -30.10 2.99 -699.08 -2.09 -32.20 16 19 C -0.26 -14.30 9.58 84.03 0.81 -13.49 16 20 H 0.06 3.40 7.89 -2.91 -0.02 3.37 16 21 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 22 N -0.93 -55.31 11.19 21.65 0.24 -55.07 16 23 Si 0.96 45.41 29.59 68.60 2.03 47.43 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 26 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 27 C 0.18 8.59 4.83 86.36 0.42 9.00 16 28 C -0.12 -4.46 4.91 30.67 0.15 -4.31 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.56 4.98 -2.39 -0.01 1.55 16 31 H 0.07 1.52 6.86 -2.39 -0.02 1.51 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.41 6.81 6.16 -92.71 -0.57 6.24 16 35 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.11 1.60 7.83 -2.39 -0.02 1.58 16 37 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 38 H 0.08 1.42 8.10 -2.38 -0.02 1.40 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 47 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.08 1.98 6.82 -2.38 -0.02 1.97 16 49 H 0.03 0.97 6.69 -2.39 -0.02 0.96 16 50 H 0.05 1.88 7.93 -2.39 -0.02 1.87 16 51 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 52 H 0.01 0.36 6.69 -2.38 -0.02 0.34 16 53 H 0.05 2.54 6.06 -2.39 -0.01 2.53 16 54 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 55 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -70.17 411.03 2.10 -68.07 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.28 Total: 18.04 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 5.46 Total: -1.05 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -4.14 Total: -105.04 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -1.53 Total: -27.45 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -70.17 2.10 -68.07 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724302045.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.762 kcal (2) G-P(sol) polarization free energy of solvation -70.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.95 seconds