Wall clock time and date at job start Tue Mar 31 2020 21:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.54459 * 107.40626 * 2 1 4 4 C 1.52583 * 110.16653 * 116.92206 * 2 1 3 5 5 C 1.52822 * 110.39796 * 71.03913 * 4 2 1 6 6 C 1.51081 * 109.06408 * 181.31925 * 5 4 2 7 7 O 1.21282 * 119.99628 * 0.71685 * 6 5 4 8 8 N 1.34767 * 120.00008 * 180.71869 * 6 5 4 9 9 C 1.46506 * 119.99718 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46749 * 180.02562 * 9 8 6 11 11 O 1.42904 * 113.41731 * 51.80016 * 10 9 8 12 12 C 1.53504 * 114.20366 * 185.00010 * 10 9 8 13 13 N 1.47066 * 88.04678 * 87.54725 * 12 10 9 14 14 C 1.36941 * 136.05541 * 207.05070 * 13 12 10 15 15 H 1.07998 * 119.99878 * 0.02562 * 14 13 12 16 16 C 1.38809 * 119.99593 * 180.02562 * 14 13 12 17 17 N 1.31622 * 120.00459 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99771 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46960 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46905 * 120.00013 * 18 16 14 21 21 H 1.48490 * 109.47336 * 239.99860 * 18 16 14 22 22 C 1.47064 * 87.88659 * 27.09306 * 13 12 10 23 23 C 1.52709 * 108.67473 * 62.46593 * 5 4 2 24 24 C 1.52445 * 110.91640 * 298.63324 * 23 5 4 25 25 C 1.53132 * 109.98190 * 286.81301 * 24 23 5 26 26 C 1.54521 * 107.57946 * 170.30658 * 24 23 5 27 27 C 1.51752 * 112.75407 * 51.45809 * 24 23 5 28 28 H 1.09004 * 109.47658 * 303.07074 * 1 2 3 29 29 H 1.09001 * 109.47773 * 63.08217 * 1 2 3 30 30 H 1.09008 * 109.46380 * 183.07750 * 1 2 3 31 31 H 1.08993 * 109.47302 * 178.58542 * 3 2 1 32 32 H 1.08995 * 109.46953 * 298.59023 * 3 2 1 33 33 H 1.08998 * 109.46764 * 58.58909 * 3 2 1 34 34 H 1.09228 * 109.45628 * 310.69055 * 4 2 1 35 35 H 1.09202 * 109.48898 * 191.44391 * 4 2 1 36 36 H 1.08592 * 110.56964 * 300.98020 * 5 4 2 37 37 H 0.96999 * 120.00738 * 359.97438 * 8 6 5 38 38 H 1.08995 * 109.47151 * 60.00171 * 9 8 6 39 39 H 1.09002 * 109.47077 * 299.99631 * 9 8 6 40 40 H 0.96700 * 113.99553 * 313.20347 * 11 10 9 41 41 H 1.09002 * 113.46865 * 332.73821 * 12 10 9 42 42 H 1.08999 * 113.46581 * 202.35597 * 12 10 9 43 43 H 0.97000 * 120.00117 * 180.02562 * 17 16 14 44 44 H 1.08999 * 113.47096 * 87.65665 * 22 13 12 45 45 H 1.09005 * 113.46966 * 218.04058 * 22 13 12 46 46 H 1.09312 * 109.24713 * 59.34849 * 23 5 4 47 47 H 1.09325 * 109.23952 * 177.94372 * 23 5 4 48 48 H 1.09001 * 109.47363 * 185.57625 * 25 24 23 49 49 H 1.09002 * 109.47202 * 305.57299 * 25 24 23 50 50 H 1.08997 * 109.47594 * 65.57661 * 25 24 23 51 51 H 1.09000 * 109.47239 * 298.08702 * 26 24 23 52 52 H 1.08998 * 109.46846 * 58.08021 * 26 24 23 53 53 H 1.08991 * 109.47240 * 178.08070 * 26 24 23 54 54 H 1.10201 * 108.65838 * 194.15415 * 27 24 23 55 55 H 1.10254 * 108.60364 * 79.20331 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 1.9920 1.4739 0.0000 4 6 2.0560 -0.6485 1.2771 5 6 1.8028 -2.1554 1.2526 6 6 2.3048 -2.7612 2.5423 7 8 2.7993 -2.0523 3.3931 8 7 2.2033 -4.0893 2.7474 9 6 2.6907 -4.6768 3.9978 10 6 2.4583 -6.1889 3.9754 11 8 2.9708 -6.8249 2.8029 12 6 2.8198 -6.9006 5.2866 13 7 1.4552 -6.6190 5.7570 14 6 0.8478 -6.4421 6.9716 15 1 1.4286 -6.5046 7.8799 16 6 -0.5143 -6.1824 7.0350 17 7 -1.2222 -6.1068 5.9279 18 14 -1.3427 -5.9403 8.6917 19 1 -0.3342 -6.0732 9.7736 20 1 -1.9522 -4.5873 8.7473 21 1 -2.4002 -6.9672 8.8712 22 6 1.0297 -6.6122 4.3493 23 6 2.5734 -2.7618 0.0819 24 6 2.0949 -2.1809 -1.2439 25 6 0.7158 -2.7461 -1.5955 26 6 3.0763 -2.6514 -2.3408 27 6 2.0819 -0.6635 -1.2493 28 1 -0.3634 0.5608 0.8612 29 1 -0.3635 0.4652 -0.9163 30 1 -0.3632 -1.0263 0.0552 31 1 3.0810 1.5133 0.0254 32 1 1.6315 1.9676 -0.9023 33 1 1.5896 1.9807 0.8771 34 1 1.5511 -0.2117 2.1415 35 1 3.1287 -0.4637 1.3643 36 1 0.7410 -2.3623 1.1576 37 1 1.8075 -4.6563 2.0671 38 1 2.1533 -4.2386 4.8388 39 1 3.7567 -4.4749 4.1029 40 1 2.7413 -6.3740 1.9788 41 1 3.5914 -6.3875 5.8606 42 1 3.0250 -7.9637 5.1610 43 1 -2.1739 -5.9250 5.9723 44 1 0.7578 -7.5984 3.9731 45 1 0.2785 -5.8545 4.1265 46 1 3.6394 -2.5545 0.2062 47 1 2.4281 -3.8453 0.0776 48 1 0.4253 -2.4038 -2.5887 49 1 0.7557 -3.8353 -1.5838 50 1 -0.0154 -2.4014 -0.8642 51 1 4.0728 -2.2648 -2.1269 52 1 3.1055 -3.7408 -2.3592 53 1 2.7429 -2.2804 -3.3099 54 1 1.4976 -0.3190 -2.1178 55 1 3.1113 -0.3035 -1.4119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724468084.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:59 Heat of formation + Delta-G solvation = -80.659497 kcal Electronic energy + Delta-G solvation = -31624.610370 eV Core-core repulsion = 27661.295026 eV Total energy + Delta-G solvation = -3963.315344 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.73396 -40.79998 -39.57778 -36.72100 -35.93585 -35.23292 -34.09803 -33.47492 -29.99438 -28.69488 -28.04556 -27.43546 -27.37723 -27.01506 -26.57582 -24.74340 -23.77824 -21.35449 -20.66556 -20.57915 -18.98601 -18.86759 -18.61802 -17.52565 -17.17274 -16.60878 -16.52094 -15.90107 -15.81915 -15.53840 -15.42840 -15.28320 -14.93606 -14.83560 -14.59574 -14.33008 -14.27011 -14.03162 -13.69833 -13.48050 -13.36859 -13.03485 -12.99713 -12.89516 -12.85870 -12.79187 -12.56529 -12.52130 -12.46695 -12.18815 -12.07556 -11.95337 -11.87794 -11.78385 -11.55388 -11.49718 -11.42167 -11.04847 -10.96035 -10.77238 -10.68255 -10.60429 -10.14869 -9.01256 -7.96360 -5.30748 1.44026 1.45092 1.55132 1.62949 2.07182 2.40730 3.06054 3.24607 3.39855 3.50738 3.53787 3.65467 3.68592 3.82283 4.02837 4.09993 4.12817 4.23750 4.29498 4.37260 4.39498 4.47143 4.63960 4.67370 4.75126 4.78925 4.79492 4.83066 4.86651 4.90269 4.93187 4.97986 4.98537 5.01808 5.11354 5.13709 5.14371 5.14691 5.19990 5.21856 5.25102 5.29273 5.33070 5.39063 5.43736 5.46995 5.51832 5.59468 5.62593 5.69668 5.84049 6.46686 6.76089 6.84969 7.22035 7.52948 8.50451 9.20877 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013798 B = 0.002955 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.779840 B = 9471.987445 C =10363.344192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.053 4.053 3 C -0.144 4.144 4 C -0.083 4.083 5 C -0.091 4.091 6 C 0.512 3.488 7 O -0.586 6.586 8 N -0.713 5.713 9 C 0.142 3.858 10 C 0.091 3.909 11 O -0.544 6.544 12 C 0.132 3.868 13 N -0.630 5.630 14 C -0.230 4.230 15 H 0.088 0.912 16 C -0.062 4.062 17 N -0.948 5.948 18 Si 0.979 3.021 19 H -0.265 1.265 20 H -0.293 1.293 21 H -0.290 1.290 22 C 0.137 3.863 23 C -0.094 4.094 24 C -0.051 4.051 25 C -0.149 4.149 26 C -0.143 4.143 27 C -0.092 4.092 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.108 0.892 37 H 0.410 0.590 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.385 0.615 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.249 0.751 44 H 0.021 0.979 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.081 0.919 48 H 0.062 0.938 49 H 0.061 0.939 50 H 0.056 0.944 51 H 0.051 0.949 52 H 0.060 0.940 53 H 0.061 0.939 54 H 0.072 0.928 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.596 10.244 -21.609 24.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.053 4.053 3 C -0.201 4.201 4 C -0.121 4.121 5 C -0.112 4.112 6 C 0.300 3.700 7 O -0.465 6.465 8 N -0.366 5.366 9 C 0.017 3.983 10 C 0.048 3.952 11 O -0.350 6.350 12 C 0.006 3.994 13 N -0.358 5.358 14 C -0.357 4.357 15 H 0.105 0.895 16 C -0.256 4.256 17 N -0.596 5.596 18 Si 0.807 3.193 19 H -0.189 1.189 20 H -0.220 1.220 21 H -0.216 1.216 22 C 0.011 3.989 23 C -0.132 4.132 24 C -0.051 4.051 25 C -0.206 4.206 26 C -0.200 4.200 27 C -0.130 4.130 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.126 0.874 37 H 0.247 0.753 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.235 0.765 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.039 0.961 45 H 0.067 0.933 46 H 0.080 0.920 47 H 0.100 0.900 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.075 0.925 51 H 0.070 0.930 52 H 0.079 0.921 53 H 0.081 0.919 54 H 0.090 0.910 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.966 10.380 -20.344 23.878 hybrid contribution -1.146 0.012 0.736 1.362 sum 5.820 10.392 -19.608 22.942 Atomic orbital electron populations 1.22055 0.94226 1.02136 1.01878 1.20356 0.95761 0.95305 0.93839 1.22264 1.00954 0.95026 1.01898 1.21277 1.01015 0.92402 0.97389 1.21238 1.02216 0.96841 0.90899 1.21531 0.77467 0.81488 0.89520 1.90675 1.46589 1.61437 1.47831 1.45789 1.62880 1.08348 1.19594 1.21127 0.99299 0.90691 0.87157 1.23109 0.95152 0.90487 0.86419 1.86543 1.78119 1.54363 1.15987 1.22483 0.88554 0.98174 0.90201 1.45475 1.05709 1.82518 1.02123 1.19310 0.91699 1.41171 0.83540 0.89450 1.25624 0.96720 1.02411 1.00794 1.69994 1.06470 1.55982 1.27130 0.85001 0.78316 0.76790 0.79182 1.18877 1.21970 1.21646 1.22699 0.94379 0.97732 0.84125 1.21517 0.99137 1.00507 0.92022 1.20302 0.96369 0.94603 0.93851 1.22113 0.95647 1.01091 1.01732 1.22275 0.98304 1.01491 0.97960 1.21339 1.01511 0.93638 0.96492 0.93614 0.91351 0.92096 0.92881 0.91437 0.93411 0.93622 0.92566 0.87434 0.75286 0.93197 0.90739 0.76515 0.92116 0.92846 0.94171 0.96090 0.93262 0.91979 0.90017 0.91872 0.92041 0.92512 0.92985 0.92109 0.91949 0.90956 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 7.98 71.98 0.57 -1.69 16 2 C -0.05 -0.84 0.70 -52.21 -0.04 -0.88 16 3 C -0.14 -2.19 8.09 72.48 0.59 -1.60 16 4 C -0.08 -1.84 3.09 30.40 0.09 -1.75 16 5 C -0.09 -1.94 2.33 -11.58 -0.03 -1.96 16 6 C 0.51 15.48 7.14 87.78 0.63 16.11 16 7 O -0.59 -23.23 15.92 -3.04 -0.05 -23.28 16 8 N -0.71 -20.19 5.20 -462.62 -2.41 -22.60 16 9 C 0.14 5.06 5.32 86.38 0.46 5.52 16 10 C 0.09 3.30 1.74 -10.42 -0.02 3.28 16 11 O -0.54 -16.04 13.56 -148.98 -2.02 -18.06 16 12 C 0.13 5.46 8.10 83.18 0.67 6.14 16 13 N -0.63 -32.48 3.57 -738.18 -2.63 -35.12 16 14 C -0.23 -12.96 10.75 84.03 0.90 -12.06 16 15 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 16 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 17 N -0.95 -56.70 11.51 21.65 0.25 -56.45 16 18 Si 0.98 46.08 29.55 68.60 2.03 48.10 16 19 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 22 C 0.14 6.37 6.81 83.22 0.57 6.94 16 23 C -0.09 -1.47 3.69 30.31 0.11 -1.35 16 24 C -0.05 -0.63 0.71 -52.21 -0.04 -0.67 16 25 C -0.15 -1.72 8.01 72.03 0.58 -1.14 16 26 C -0.14 -1.51 8.06 72.50 0.58 -0.93 16 27 C -0.09 -1.20 3.47 29.80 0.10 -1.09 16 28 H 0.04 0.79 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 30 H 0.06 0.95 4.50 -2.38 -0.01 0.94 16 31 H 0.05 0.81 8.08 -2.39 -0.02 0.79 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.04 1.22 8.02 -2.27 -0.02 1.21 16 35 H 0.06 1.37 8.09 -2.28 -0.02 1.36 16 36 H 0.11 2.15 6.16 -2.60 -0.02 2.14 16 37 H 0.41 8.88 6.66 -92.71 -0.62 8.27 16 38 H 0.05 2.26 7.94 -2.39 -0.02 2.24 16 39 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.39 7.71 7.50 -74.06 -0.56 7.15 16 41 H 0.06 2.35 8.12 -2.39 -0.02 2.33 16 42 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 44 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.05 2.53 7.10 -2.38 -0.02 2.51 16 46 H 0.06 1.07 8.10 -2.22 -0.02 1.05 16 47 H 0.08 1.04 7.47 -2.21 -0.02 1.02 16 48 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.06 0.67 8.10 -2.39 -0.02 0.65 16 50 H 0.06 0.73 4.69 -2.39 -0.01 0.72 16 51 H 0.05 0.58 8.05 -2.39 -0.02 0.56 16 52 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 53 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 54 H 0.07 0.79 7.96 -1.74 -0.01 0.78 16 55 H 0.06 0.78 7.60 -1.71 -0.01 0.77 16 Total: -1.00 -72.11 413.74 1.09 -71.02 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: -0.29 Total: 26.60 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 6.21 Total: 9.78 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -4.79 Total: -114.16 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -2.07 Total: -41.34 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -72.11 1.09 -71.02 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724468084.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.641 kcal (2) G-P(sol) polarization free energy of solvation -72.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds