Wall clock time and date at job start Tue Mar 31 2020 22:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 110.80318 * 2 1 4 4 C 1.55000 * 110.90632 * 236.33832 * 2 1 3 5 5 O 1.44377 * 103.49186 * 204.77620 * 4 2 1 6 6 C 1.43748 * 106.97328 * 40.05778 * 5 4 2 7 7 H 1.09005 * 110.00128 * 92.98098 * 6 5 4 8 8 C 1.52999 * 109.88004 * 214.06275 * 6 5 4 9 9 C 1.50707 * 109.47041 * 292.83316 * 8 6 5 10 10 O 1.21280 * 119.99800 * 359.97438 * 9 8 6 11 11 N 1.34776 * 119.99756 * 179.97438 * 9 8 6 12 12 C 1.46502 * 119.99848 * 179.72311 * 11 9 8 13 13 C 1.53000 * 109.47074 * 180.27528 * 12 11 9 14 14 H 1.09005 * 109.44724 * 295.05391 * 13 12 11 15 15 C 1.54868 * 109.44770 * 175.13739 * 13 12 11 16 16 C 1.47150 * 110.31862 * 168.73568 * 15 13 12 17 17 C 1.52564 * 114.34494 * 62.76696 * 16 15 13 18 18 C 1.50882 * 109.35407 * 274.99650 * 17 16 15 19 19 C 1.53947 * 110.08881 * 91.88687 * 18 17 16 20 20 N 1.44568 * 109.44982 * 55.00357 * 13 12 11 21 21 C 1.36934 * 118.64548 * 30.75202 * 20 13 12 22 22 H 1.08005 * 119.99924 * 27.74883 * 21 20 13 23 23 C 1.38811 * 120.00653 * 207.75261 * 21 20 13 24 24 N 1.31619 * 119.99578 * 14.60617 * 23 21 20 25 25 Si 1.86801 * 120.00511 * 194.60927 * 23 21 20 26 26 H 1.48506 * 109.46748 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47327 * 119.99600 * 25 23 21 28 28 H 1.48496 * 109.47018 * 239.99961 * 25 23 21 29 29 C 1.54096 * 107.29398 * 333.48690 * 6 5 4 30 30 H 1.09004 * 109.46895 * 296.37098 * 1 2 3 31 31 H 1.09003 * 109.47552 * 56.36593 * 1 2 3 32 32 H 1.09001 * 109.47122 * 176.37213 * 1 2 3 33 33 H 1.09002 * 109.46710 * 183.63030 * 3 2 1 34 34 H 1.08998 * 109.47220 * 303.63135 * 3 2 1 35 35 H 1.08996 * 109.46723 * 63.63429 * 3 2 1 36 36 H 1.08999 * 110.61368 * 323.27925 * 4 2 1 37 37 H 1.09000 * 110.61954 * 86.11776 * 4 2 1 38 38 H 1.08998 * 109.47274 * 172.83397 * 8 6 5 39 39 H 1.09001 * 109.47264 * 52.83231 * 8 6 5 40 40 H 0.96995 * 120.00127 * 0.02562 * 11 9 8 41 41 H 1.08991 * 109.47225 * 300.27896 * 12 11 9 42 42 H 1.09003 * 109.46805 * 60.27859 * 12 11 9 43 43 H 1.09003 * 109.32619 * 288.96709 * 15 13 12 44 44 H 1.08997 * 109.33097 * 48.44175 * 15 13 12 45 45 H 1.09002 * 108.48304 * 301.52528 * 16 15 13 46 46 H 1.08993 * 108.40001 * 183.95617 * 16 15 13 47 47 H 1.09006 * 109.49069 * 155.03731 * 17 16 15 48 48 H 1.08999 * 109.51247 * 34.97660 * 17 16 15 49 49 H 1.09006 * 109.36793 * 331.70177 * 18 17 16 50 50 H 1.08995 * 109.26739 * 212.01583 * 18 17 16 51 51 H 1.09005 * 108.94419 * 198.75095 * 19 18 17 52 52 H 1.08995 * 108.87395 * 80.08321 * 19 18 17 53 53 H 0.97008 * 120.00079 * 180.02562 * 24 23 21 54 54 H 1.09007 * 110.48712 * 120.70619 * 29 6 5 55 55 H 1.09004 * 110.48910 * 243.35060 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0734 1.4303 0.0000 4 6 2.0831 -0.8026 -1.2052 5 8 3.3940 -1.2146 -0.7624 6 6 3.2718 -1.5880 0.6204 7 1 3.0837 -2.6586 0.7022 8 6 4.5542 -1.2264 1.3723 9 6 5.6867 -2.0891 0.8780 10 8 5.4875 -2.9125 0.0101 11 7 6.9208 -1.9457 1.4004 12 6 8.0203 -2.7886 0.9241 13 6 9.3017 -2.4302 1.6795 14 1 9.5934 -1.4087 1.4353 15 6 10.4337 -3.4023 1.2647 16 6 11.7306 -2.9197 1.7653 17 6 11.8310 -2.8492 3.2860 18 6 11.2633 -1.5356 3.7643 19 6 9.7673 -1.6939 4.0913 20 7 9.0677 -2.5371 3.1021 21 6 8.1591 -3.4581 3.5506 22 1 7.9698 -4.3536 2.9771 23 6 7.4811 -3.2411 4.7423 24 7 7.4851 -2.0459 5.2934 25 14 6.5631 -4.6453 5.5638 26 1 6.7118 -5.8778 4.7488 27 1 7.1235 -4.8772 6.9194 28 1 5.1239 -4.2973 5.6761 29 6 2.0825 -0.8009 1.2040 30 1 -0.3633 0.4565 0.9208 31 1 -0.3634 0.5692 -0.8556 32 1 -0.3633 -1.0256 -0.0650 33 1 3.1612 1.4056 -0.0651 34 1 1.6704 1.9721 -0.8556 35 1 1.7758 1.9320 0.9208 36 1 1.4561 -1.6707 -1.4083 37 1 2.1555 -0.1678 -2.0883 38 1 4.4091 -1.3937 2.4396 39 1 4.7939 -0.1774 1.1983 40 1 7.0800 -1.2874 2.0947 41 1 7.7767 -3.8365 1.0985 42 1 8.1692 -2.6229 -0.1429 43 1 10.2318 -4.3895 1.6803 44 1 10.4693 -3.4718 0.1776 45 1 11.9083 -1.9234 1.3602 46 1 12.5108 -3.5858 1.3974 47 1 12.8765 -2.9240 3.5853 48 1 11.2669 -3.6712 3.7266 49 1 11.3852 -0.7838 2.9845 50 1 11.7973 -1.2177 4.6596 51 1 9.3024 -0.7081 4.1079 52 1 9.6680 -2.1482 5.0770 53 1 7.0116 -1.8942 6.1263 54 1 1.3246 -1.4839 1.5880 55 1 2.4210 -0.1247 1.9891 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725243277.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:20 Heat of formation + Delta-G solvation = -97.338253 kcal Electronic energy + Delta-G solvation = -31723.331905 eV Core-core repulsion = 27759.293316 eV Total energy + Delta-G solvation = -3964.038589 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.23004 -40.33201 -39.40581 -35.96882 -35.39232 -35.17284 -33.55190 -32.87887 -32.43865 -29.17073 -28.24119 -28.01933 -27.12620 -26.55893 -25.19422 -23.74281 -22.37455 -21.44191 -20.86609 -20.77913 -20.32529 -18.47899 -17.69924 -17.30985 -16.95970 -16.75562 -16.52955 -16.13939 -16.04301 -15.81165 -15.49570 -15.21215 -15.06033 -14.77902 -14.41690 -14.32830 -14.22511 -13.78725 -13.67495 -13.50731 -13.36337 -13.21383 -12.95679 -12.87559 -12.79559 -12.77779 -12.62720 -12.44530 -12.34929 -12.27413 -11.99279 -11.72466 -11.56895 -11.53646 -11.46712 -11.40009 -11.31805 -11.19526 -11.02675 -10.61055 -10.51021 -10.34200 -9.72249 -8.53874 -7.77749 -5.20903 1.40019 1.46855 1.52459 1.86780 2.49861 2.56288 2.96442 3.36863 3.47543 3.60962 3.73808 3.89072 3.98847 4.01851 4.05273 4.10712 4.21324 4.27673 4.38237 4.40748 4.44857 4.52251 4.61545 4.62678 4.68397 4.69048 4.71863 4.82077 4.84615 4.85479 4.91777 4.99939 5.01594 5.06141 5.08780 5.13035 5.14365 5.24736 5.26742 5.27449 5.33427 5.38643 5.43430 5.45702 5.56137 5.67611 5.73496 5.78000 5.83046 5.92456 6.05572 6.49182 6.84339 7.28680 7.49613 8.02199 8.40593 9.25886 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013407 B = 0.003252 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.932009 B = 8608.816263 C = 9600.384765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.094 4.094 3 C -0.134 4.134 4 C 0.044 3.956 5 O -0.386 6.386 6 C 0.097 3.903 7 H 0.048 0.952 8 C -0.131 4.131 9 C 0.505 3.495 10 O -0.591 6.591 11 N -0.694 5.694 12 C 0.135 3.865 13 C 0.175 3.825 14 H 0.056 0.944 15 C -0.129 4.129 16 C -0.100 4.100 17 C -0.103 4.103 18 C -0.133 4.133 19 C 0.190 3.810 20 N -0.587 5.587 21 C -0.231 4.231 22 H 0.045 0.955 23 C -0.024 4.024 24 N -0.918 5.918 25 Si 0.929 3.071 26 H -0.286 1.286 27 H -0.293 1.293 28 H -0.295 1.295 29 C -0.141 4.141 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.408 0.592 41 H 0.037 0.963 42 H 0.058 0.942 43 H 0.040 0.960 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.041 0.959 49 H 0.059 0.941 50 H 0.061 0.939 51 H 0.004 0.996 52 H 0.039 0.961 53 H 0.246 0.754 54 H 0.086 0.914 55 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.907 7.927 -8.134 12.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.094 4.094 3 C -0.191 4.191 4 C -0.032 4.032 5 O -0.305 6.305 6 C 0.039 3.961 7 H 0.066 0.934 8 C -0.171 4.171 9 C 0.292 3.708 10 O -0.473 6.473 11 N -0.343 5.343 12 C 0.010 3.990 13 C 0.067 3.933 14 H 0.074 0.926 15 C -0.170 4.170 16 C -0.137 4.137 17 C -0.141 4.141 18 C -0.172 4.172 19 C 0.065 3.935 20 N -0.310 5.310 21 C -0.362 4.362 22 H 0.063 0.937 23 C -0.220 4.220 24 N -0.565 5.565 25 Si 0.760 3.240 26 H -0.211 1.211 27 H -0.220 1.220 28 H -0.222 1.222 29 C -0.178 4.178 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.243 0.757 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.060 0.940 49 H 0.078 0.922 50 H 0.080 0.920 51 H 0.022 0.978 52 H 0.058 0.942 53 H 0.056 0.944 54 H 0.105 0.895 55 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.886 7.417 -8.719 12.872 hybrid contribution -0.601 -0.969 1.335 1.755 sum -6.487 6.448 -7.384 11.755 Atomic orbital electron populations 1.21731 0.91750 1.02392 1.03060 1.22118 0.97321 0.96203 0.93782 1.21760 1.00608 0.93891 1.02818 1.23851 0.83829 0.97672 0.97879 1.88978 1.30129 1.86130 1.25291 1.22351 0.93879 0.97896 0.81964 0.93412 1.21876 0.92592 1.01111 1.01542 1.20974 0.84515 0.83823 0.81454 1.90615 1.84191 1.38695 1.33768 1.45757 1.08404 1.39528 1.40578 1.21379 0.87166 0.94088 0.96406 1.20640 0.91711 0.97050 0.83876 0.92636 1.21305 0.96254 0.99375 1.00027 1.20279 0.96705 1.01367 0.95378 1.20906 0.99422 0.97621 0.96130 1.21947 0.97012 0.97531 1.00667 1.20790 0.88340 0.92446 0.91928 1.43770 1.44803 1.42517 0.99882 1.18993 1.14340 0.98018 1.04860 0.93723 1.25219 0.99312 0.96793 1.00715 1.70121 1.46426 1.19686 1.20222 0.85802 0.78512 0.81098 0.78562 1.21118 1.22045 1.22204 1.23164 0.96500 0.99322 0.98841 0.91397 0.91149 0.92370 0.93553 0.91253 0.91388 0.92237 0.88193 0.87311 0.87138 0.75674 0.94488 0.92356 0.94083 0.91141 0.92008 0.92006 0.91788 0.93981 0.92234 0.92036 0.97813 0.94208 0.94390 0.89544 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 8.55 71.98 0.62 -1.19 16 2 C -0.09 -1.73 0.99 -50.88 -0.05 -1.78 16 3 C -0.13 -2.26 8.53 71.98 0.61 -1.65 16 4 C 0.04 1.01 6.63 72.67 0.48 1.49 16 5 O -0.39 -12.56 10.57 -138.18 -1.46 -14.02 16 6 C 0.10 2.96 2.93 30.96 0.09 3.05 16 7 H 0.05 1.66 7.93 -2.38 -0.02 1.64 16 8 C -0.13 -4.23 5.19 29.85 0.15 -4.07 16 9 C 0.50 20.57 7.73 87.66 0.68 21.24 16 10 O -0.59 -28.06 15.51 7.77 0.12 -27.94 16 11 N -0.69 -27.92 4.72 -463.05 -2.19 -30.11 16 12 C 0.13 5.36 4.52 86.38 0.39 5.75 16 13 C 0.18 6.52 2.19 45.99 0.10 6.63 16 14 H 0.06 1.98 8.07 -2.38 -0.02 1.96 16 15 C -0.13 -4.22 5.07 29.41 0.15 -4.07 16 16 C -0.10 -2.86 5.16 28.63 0.15 -2.71 16 17 C -0.10 -3.28 5.51 29.76 0.16 -3.11 16 18 C -0.13 -4.45 5.71 30.23 0.17 -4.28 16 19 C 0.19 8.18 4.66 86.49 0.40 8.58 16 20 N -0.59 -25.61 1.78 -674.25 -1.20 -26.80 16 21 C -0.23 -11.58 7.65 84.03 0.64 -10.94 16 22 H 0.05 2.40 6.71 -2.91 -0.02 2.38 16 23 C -0.02 -1.24 4.89 84.86 0.41 -0.83 16 24 N -0.92 -48.46 11.03 21.65 0.24 -48.22 16 25 Si 0.93 44.06 29.58 68.60 2.03 46.09 16 26 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 27 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 29 C -0.14 -3.06 5.81 31.58 0.18 -2.88 16 30 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.80 8.09 -2.39 -0.02 0.78 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.30 8.01 -2.39 -0.02 1.28 16 37 H 0.10 1.98 8.06 -2.39 -0.02 1.96 16 38 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 39 H 0.11 3.12 8.14 -2.39 -0.02 3.11 16 40 H 0.41 16.69 8.08 -92.71 -0.75 15.94 16 41 H 0.04 1.68 6.83 -2.39 -0.02 1.66 16 42 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.07 2.01 8.11 -2.39 -0.02 1.99 16 45 H 0.06 1.62 7.36 -2.39 -0.02 1.61 16 46 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 48 H 0.04 1.61 7.48 -2.39 -0.02 1.59 16 49 H 0.06 1.83 7.32 -2.38 -0.02 1.81 16 50 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.00 0.18 8.02 -2.38 -0.02 0.16 16 52 H 0.04 1.98 6.40 -2.39 -0.02 1.97 16 53 H 0.25 12.92 8.31 -92.70 -0.77 12.15 16 54 H 0.09 1.70 7.86 -2.38 -0.02 1.68 16 55 H 0.09 1.81 7.42 -2.38 -0.02 1.79 16 Total: -1.00 -62.26 413.97 2.99 -59.27 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.09 Total: 32.51 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 5.35 Total: 9.22 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -3.14 Total: -105.13 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -1.34 Total: -41.96 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -62.26 2.99 -59.27 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725243277.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.070 kcal (2) G-P(sol) polarization free energy of solvation -62.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds