Wall clock time and date at job start Tue Mar 31 2020 22:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53000 * 110.43751 * 2 1 4 4 C 1.54100 * 110.49201 * 122.54487 * 2 1 3 5 5 O 1.43743 * 107.29572 * 120.70396 * 4 2 1 6 6 C 1.44381 * 106.97699 * 333.48809 * 5 4 2 7 7 H 1.08997 * 110.62236 * 281.40785 * 6 5 4 8 8 C 1.52996 * 110.61771 * 158.55890 * 6 5 4 9 9 C 1.50694 * 109.47030 * 66.45785 * 8 6 5 10 10 O 1.21279 * 120.00438 * 359.97438 * 9 8 6 11 11 N 1.34783 * 120.00220 * 179.97438 * 9 8 6 12 12 C 1.46494 * 120.00191 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47381 * 179.97438 * 12 11 9 14 14 H 1.08995 * 109.42716 * 295.06965 * 13 12 11 15 15 C 1.54868 * 109.45216 * 175.12977 * 13 12 11 16 16 C 1.47098 * 110.31554 * 168.70010 * 15 13 12 17 17 C 1.52561 * 114.32890 * 62.81041 * 16 15 13 18 18 C 1.50884 * 109.35182 * 274.97533 * 17 16 15 19 19 C 1.53947 * 110.09494 * 91.88648 * 18 17 16 20 20 N 1.44579 * 109.44525 * 54.99840 * 13 12 11 21 21 C 1.36936 * 118.64484 * 31.04635 * 20 13 12 22 22 H 1.08009 * 119.99971 * 27.53709 * 21 20 13 23 23 C 1.38806 * 120.00226 * 207.53842 * 21 20 13 24 24 N 1.31626 * 120.00004 * 14.64096 * 23 21 20 25 25 Si 1.86808 * 120.00256 * 194.64215 * 23 21 20 26 26 H 1.48500 * 109.46841 * 59.99604 * 25 23 21 27 27 H 1.48500 * 109.47175 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47097 * 300.00255 * 25 23 21 29 29 C 1.54811 * 110.48874 * 237.31370 * 2 1 3 30 30 H 1.09001 * 109.47440 * 298.91030 * 1 2 3 31 31 H 1.09005 * 109.47699 * 58.90816 * 1 2 3 32 32 H 1.09003 * 109.47304 * 178.90950 * 1 2 3 33 33 H 1.08997 * 109.47568 * 181.09130 * 3 2 1 34 34 H 1.09000 * 109.46980 * 301.09194 * 3 2 1 35 35 H 1.08994 * 109.47157 * 61.08933 * 3 2 1 36 36 H 1.09002 * 109.87501 * 1.28252 * 4 2 1 37 37 H 1.08998 * 109.88135 * 240.13596 * 4 2 1 38 38 H 1.09001 * 109.47419 * 306.45340 * 8 6 5 39 39 H 1.09006 * 109.47108 * 186.45566 * 8 6 5 40 40 H 0.97001 * 119.99823 * 359.97438 * 11 9 8 41 41 H 1.09001 * 109.47403 * 59.99764 * 12 11 9 42 42 H 1.09000 * 109.47300 * 300.00338 * 12 11 9 43 43 H 1.09003 * 109.32634 * 48.44123 * 15 13 12 44 44 H 1.08995 * 109.18974 * 288.87254 * 15 13 12 45 45 H 1.09005 * 108.51112 * 301.54903 * 16 15 13 46 46 H 1.09008 * 108.38599 * 183.97525 * 16 15 13 47 47 H 1.08998 * 109.49423 * 155.01791 * 17 16 15 48 48 H 1.08996 * 109.49554 * 34.93984 * 17 16 15 49 49 H 1.09003 * 109.36738 * 331.69810 * 18 17 16 50 50 H 1.08997 * 109.26474 * 212.01269 * 18 17 16 51 51 H 1.08999 * 108.95209 * 198.74836 * 19 18 17 52 52 H 1.09008 * 108.87485 * 80.07461 * 19 18 17 53 53 H 0.97002 * 119.99796 * 180.02562 * 24 23 21 54 54 H 1.09000 * 110.91269 * 144.00934 * 29 2 1 55 55 H 1.08999 * 110.90709 * 20.39976 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0642 1.4337 0.0000 4 6 2.0694 -0.7765 1.2168 5 8 2.8754 -1.8547 0.7127 6 6 2.3780 -2.1724 -0.6050 7 1 1.4713 -2.7736 -0.5384 8 6 3.4464 -2.9004 -1.4231 9 6 3.7146 -4.2509 -0.8104 10 8 3.1109 -4.5968 0.1829 11 7 4.6252 -5.0744 -1.3665 12 6 4.8855 -6.3874 -0.7713 13 6 5.9531 -7.1160 -1.5900 14 1 5.5667 -7.3218 -2.5881 15 6 6.3166 -8.4501 -0.8924 16 6 7.1318 -9.2878 -1.7855 17 6 8.4792 -8.6791 -2.1618 18 6 8.2994 -7.7584 -3.3435 19 6 8.0349 -6.3213 -2.8589 20 7 7.1318 -6.2851 -1.6919 21 6 7.4257 -5.4333 -0.6607 22 1 7.1031 -5.6687 0.3428 23 6 8.1380 -4.2673 -0.9051 24 7 8.2824 -3.8306 -2.1384 25 14 8.8918 -3.3179 0.5161 26 1 9.8599 -4.1862 1.2332 27 1 9.5956 -2.1194 -0.0070 28 1 7.8198 -2.8938 1.4521 29 6 2.0718 -0.7832 -1.2205 30 1 -0.3634 0.4968 0.8996 31 1 -0.3635 0.5307 -0.8800 32 1 -0.3634 -1.0275 -0.0196 33 1 3.1538 1.4155 -0.0196 34 1 1.6937 1.9594 -0.8800 35 1 1.7255 1.9476 0.8995 36 1 1.2391 -1.1756 1.7995 37 1 2.6772 -0.1179 1.8371 38 1 4.3650 -2.3136 -1.4253 39 1 3.0951 -3.0292 -2.4469 40 1 5.1078 -4.7979 -2.1612 41 1 3.9667 -6.9739 -0.7691 42 1 5.2369 -6.2591 0.2525 43 1 5.4016 -8.9829 -0.6336 44 1 6.8796 -8.2374 0.0163 45 1 6.5670 -9.4704 -2.6998 46 1 7.3093 -10.2439 -1.2930 47 1 9.1772 -9.4743 -2.4234 48 1 8.8717 -8.1137 -1.3166 49 1 7.4546 -8.0992 -3.9421 50 1 9.2034 -7.7739 -3.9523 51 1 7.5858 -5.7506 -3.6717 52 1 8.9844 -5.8608 -2.5860 53 1 8.7805 -3.0159 -2.3092 54 1 2.9797 -0.3207 -1.6077 55 1 1.3139 -0.8616 -2.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725243281.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:29 Heat of formation + Delta-G solvation = -97.868523 kcal Electronic energy + Delta-G solvation = -31730.256700 eV Core-core repulsion = 27766.195117 eV Total energy + Delta-G solvation = -3964.061583 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.19081 -40.34533 -39.41821 -35.96965 -35.50796 -35.18204 -33.54991 -32.86784 -32.43974 -29.15465 -28.25109 -28.02489 -27.06173 -26.62229 -25.19297 -23.76994 -22.41404 -21.44299 -20.89701 -20.77584 -20.22661 -18.42795 -17.75973 -17.30701 -17.19619 -16.76896 -16.36617 -16.16086 -16.01477 -15.75998 -15.57613 -15.20506 -14.88107 -14.70593 -14.49337 -14.37418 -14.22148 -14.04567 -13.71238 -13.55866 -13.36323 -13.22962 -12.97679 -12.83682 -12.76950 -12.74710 -12.60568 -12.46069 -12.40099 -12.26380 -12.00428 -11.68185 -11.59047 -11.53640 -11.49351 -11.39574 -11.31224 -11.19984 -11.02384 -10.62341 -10.52361 -10.34111 -9.71761 -8.53683 -7.79252 -5.21226 1.40791 1.43801 1.48570 1.85895 2.50210 2.56143 2.96723 3.35770 3.45015 3.61751 3.72171 3.88016 3.98039 4.05222 4.06466 4.11175 4.18544 4.27964 4.36622 4.41689 4.48924 4.51899 4.59488 4.62047 4.63378 4.69132 4.74666 4.78703 4.79837 4.84374 4.88448 5.01736 5.02208 5.02896 5.09606 5.13381 5.14889 5.20766 5.27227 5.27733 5.29595 5.38999 5.43475 5.44044 5.56639 5.68073 5.73307 5.78549 5.83188 5.92957 6.07252 6.48353 6.84829 7.28494 7.50044 8.02527 8.39637 9.24166 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014323 B = 0.003285 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.368816 B = 8522.388365 C = 9547.777029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C -0.133 4.133 4 C 0.043 3.957 5 O -0.400 6.400 6 C 0.095 3.905 7 H 0.067 0.933 8 C -0.130 4.130 9 C 0.504 3.496 10 O -0.591 6.591 11 N -0.694 5.694 12 C 0.134 3.866 13 C 0.175 3.825 14 H 0.059 0.941 15 C -0.130 4.130 16 C -0.100 4.100 17 C -0.104 4.104 18 C -0.132 4.132 19 C 0.189 3.811 20 N -0.587 5.587 21 C -0.231 4.231 22 H 0.042 0.958 23 C -0.022 4.022 24 N -0.916 5.916 25 Si 0.926 3.074 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.298 1.298 29 C -0.135 4.135 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.136 0.864 40 H 0.408 0.592 41 H 0.063 0.937 42 H 0.032 0.968 43 H 0.072 0.928 44 H 0.038 0.962 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.040 0.960 49 H 0.061 0.939 50 H 0.061 0.939 51 H 0.005 0.995 52 H 0.038 0.962 53 H 0.246 0.754 54 H 0.079 0.921 55 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.365 2.530 -4.029 13.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 C -0.191 4.191 4 C -0.033 4.033 5 O -0.320 6.320 6 C 0.037 3.963 7 H 0.084 0.916 8 C -0.170 4.170 9 C 0.292 3.708 10 O -0.473 6.473 11 N -0.343 5.343 12 C 0.009 3.991 13 C 0.067 3.933 14 H 0.077 0.923 15 C -0.170 4.170 16 C -0.137 4.137 17 C -0.142 4.142 18 C -0.171 4.171 19 C 0.064 3.936 20 N -0.309 5.309 21 C -0.362 4.362 22 H 0.060 0.940 23 C -0.218 4.218 24 N -0.562 5.562 25 Si 0.758 3.242 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.226 1.226 29 C -0.172 4.172 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.154 0.846 40 H 0.244 0.756 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.057 0.943 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.058 0.942 49 H 0.080 0.920 50 H 0.079 0.921 51 H 0.023 0.977 52 H 0.057 0.943 53 H 0.056 0.944 54 H 0.098 0.902 55 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.512 2.310 -3.321 13.150 hybrid contribution 1.099 0.927 0.903 1.698 sum -11.413 3.236 -2.418 12.107 Atomic orbital electron populations 1.21845 0.91968 1.02070 1.03194 1.21945 0.97492 0.96572 0.93684 1.21820 1.00429 0.93730 1.03087 1.23496 0.94760 0.88384 0.96685 1.89008 1.56965 1.53403 1.32607 1.22867 0.95147 0.95954 0.82306 0.91553 1.21759 1.01237 0.92492 1.01476 1.20981 0.79160 0.86962 0.83729 1.90615 1.52417 1.77067 1.27200 1.45752 1.39754 1.17310 1.31438 1.21386 0.97290 0.83620 0.96787 1.20657 0.85882 0.90230 0.96504 0.92265 1.21307 0.99797 0.96943 0.98978 1.20270 0.95634 0.98143 0.99649 1.20910 0.97405 0.97871 0.97966 1.21945 1.00929 0.96601 0.97626 1.20801 0.93318 0.92045 0.87402 1.43753 1.23804 1.43994 1.19393 1.18878 1.30954 0.98392 0.88011 0.94000 1.25167 1.02949 0.97068 0.96630 1.70092 1.44980 1.22921 1.18244 0.85994 0.78444 0.78691 0.81086 1.21335 1.21713 1.22557 1.23325 1.02673 0.93165 0.98072 0.91569 0.90555 0.93001 0.93470 0.90749 0.91506 0.92532 0.90196 0.89114 0.84639 0.75640 0.91908 0.94955 0.90987 0.94294 0.91814 0.92055 0.91797 0.94162 0.92050 0.92053 0.97674 0.94305 0.94404 0.90207 0.87597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.25 71.98 0.59 -1.45 16 2 C -0.10 -1.92 0.99 -51.19 -0.05 -1.97 16 3 C -0.13 -2.24 8.27 71.98 0.60 -1.64 16 4 C 0.04 1.17 7.04 72.35 0.51 1.68 16 5 O -0.40 -14.80 10.61 -138.10 -1.47 -16.26 16 6 C 0.09 2.84 2.80 31.28 0.09 2.92 16 7 H 0.07 2.03 8.03 -2.39 -0.02 2.01 16 8 C -0.13 -4.12 5.48 29.84 0.16 -3.95 16 9 C 0.50 20.40 7.74 87.65 0.68 21.08 16 10 O -0.59 -27.95 15.56 7.86 0.12 -27.83 16 11 N -0.69 -27.75 4.73 -463.07 -2.19 -29.94 16 12 C 0.13 5.32 4.52 86.38 0.39 5.71 16 13 C 0.18 6.48 2.19 45.99 0.10 6.58 16 14 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 15 C -0.13 -4.22 5.06 29.40 0.15 -4.08 16 16 C -0.10 -2.83 5.15 28.61 0.15 -2.69 16 17 C -0.10 -3.31 5.51 29.76 0.16 -3.15 16 18 C -0.13 -4.42 5.71 30.23 0.17 -4.24 16 19 C 0.19 8.17 4.66 86.49 0.40 8.57 16 20 N -0.59 -25.80 1.77 -674.23 -1.20 -27.00 16 21 C -0.23 -11.85 7.67 84.03 0.64 -11.21 16 22 H 0.04 2.31 6.72 -2.91 -0.02 2.30 16 23 C -0.02 -1.15 4.89 84.86 0.41 -0.74 16 24 N -0.92 -49.31 11.04 21.65 0.24 -49.07 16 25 Si 0.93 45.80 29.58 68.60 2.03 47.83 16 26 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 27 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 28 H -0.30 -15.45 7.11 99.48 0.71 -14.75 16 29 C -0.13 -2.86 5.70 31.90 0.18 -2.68 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.92 8.13 -2.39 -0.02 0.90 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 1.46 7.69 -2.39 -0.02 1.44 16 37 H 0.08 2.06 7.69 -2.39 -0.02 2.04 16 38 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 39 H 0.14 3.20 8.14 -2.38 -0.02 3.18 16 40 H 0.41 16.55 8.09 -92.71 -0.75 15.80 16 41 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.03 1.49 6.83 -2.39 -0.02 1.48 16 43 H 0.07 2.02 8.11 -2.39 -0.02 2.00 16 44 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.06 1.64 7.36 -2.38 -0.02 1.62 16 46 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 47 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.04 1.56 7.48 -2.39 -0.02 1.54 16 49 H 0.06 1.86 7.32 -2.39 -0.02 1.84 16 50 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 51 H 0.01 0.24 8.03 -2.39 -0.02 0.22 16 52 H 0.04 1.95 6.39 -2.38 -0.02 1.93 16 53 H 0.25 13.26 8.31 -92.71 -0.77 12.49 16 54 H 0.08 1.72 7.79 -2.39 -0.02 1.71 16 55 H 0.11 1.69 7.86 -2.39 -0.02 1.67 16 Total: -1.00 -65.48 413.83 2.98 -62.50 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.09 Total: 31.01 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 5.35 Total: 8.75 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -3.15 Total: -106.00 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -1.34 Total: -44.10 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -65.48 2.98 -62.50 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725243281.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.367 kcal (2) G-P(sol) polarization free energy of solvation -65.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds