Wall clock time and date at job start Tue Mar 31 2020 21:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00089 * 2 1 4 4 C 1.52999 * 109.47507 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46891 * 64.99734 * 4 3 2 6 6 C 1.36931 * 120.00142 * 269.99750 * 5 4 3 7 7 H 1.08010 * 119.99792 * 144.42785 * 6 5 4 8 8 C 1.38815 * 120.00431 * 324.43432 * 6 5 4 9 9 N 1.31620 * 119.99788 * 338.05600 * 8 6 5 10 10 Si 1.86797 * 119.99786 * 158.05693 * 8 6 5 11 11 H 1.48501 * 109.47150 * 90.00426 * 10 8 6 12 12 H 1.48503 * 109.46896 * 209.99733 * 10 8 6 13 13 H 1.48494 * 109.47649 * 329.99939 * 10 8 6 14 14 C 1.46502 * 119.99564 * 90.00357 * 5 4 3 15 15 C 1.53003 * 109.47118 * 95.15296 * 14 5 4 16 16 N 1.46495 * 109.47163 * 179.97438 * 15 14 5 17 17 C 1.34775 * 120.00058 * 179.97438 * 16 15 14 18 18 O 1.21283 * 119.99887 * 5.04424 * 17 16 15 19 19 C 1.50699 * 120.00105 * 185.04669 * 17 16 15 20 20 C 1.55924 * 115.92199 * 301.29353 * 19 17 16 21 21 C 1.56530 * 103.72772 * 199.69815 * 20 19 17 22 22 C 1.55920 * 104.82102 * 359.59682 * 21 20 19 23 23 C 1.55929 * 104.49959 * 289.99068 * 22 21 20 24 24 C 1.54581 * 104.64103 * 70.28054 * 23 22 21 25 25 C 1.56950 * 116.22462 * 182.30878 * 19 17 16 26 26 C 1.52995 * 112.02886 * 296.35054 * 25 19 17 27 27 C 1.52999 * 112.03210 * 62.87738 * 25 19 17 28 28 H 1.09005 * 109.46870 * 60.00280 * 1 2 3 29 29 H 1.09004 * 109.47076 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47347 * 300.00125 * 1 2 3 31 31 H 1.08998 * 109.46917 * 59.99735 * 3 2 1 32 32 H 1.08996 * 109.47059 * 300.00004 * 3 2 1 33 33 H 1.09002 * 109.47376 * 305.00357 * 4 3 2 34 34 H 1.08995 * 109.47510 * 184.99934 * 4 3 2 35 35 H 0.96993 * 119.99869 * 179.97438 * 9 8 6 36 36 H 1.08993 * 109.47420 * 335.15458 * 14 5 4 37 37 H 1.09000 * 109.46987 * 215.15160 * 14 5 4 38 38 H 1.09000 * 109.47080 * 299.99807 * 15 14 5 39 39 H 1.09006 * 109.47094 * 59.99654 * 15 14 5 40 40 H 0.97003 * 120.00349 * 0.02562 * 16 15 14 41 41 H 1.09004 * 110.40478 * 318.76195 * 20 19 17 42 42 H 1.09006 * 110.40390 * 81.17379 * 20 19 17 43 43 H 1.09000 * 110.08510 * 240.85851 * 21 20 19 44 44 H 1.08995 * 110.64368 * 118.61451 * 21 20 19 45 45 H 1.09007 * 115.91833 * 161.11528 * 22 21 20 46 46 H 1.09003 * 110.39949 * 311.49140 * 23 22 21 47 47 H 1.08998 * 110.40038 * 189.07143 * 23 22 21 48 48 H 1.08996 * 110.40170 * 241.20791 * 24 23 22 49 49 H 1.08996 * 110.40153 * 118.79250 * 24 23 22 50 50 H 1.08999 * 109.47050 * 63.43764 * 26 25 19 51 51 H 1.09001 * 109.47574 * 183.44219 * 26 25 19 52 52 H 1.09000 * 109.47315 * 303.44425 * 26 25 19 53 53 H 1.09001 * 109.47405 * 59.99402 * 27 25 19 54 54 H 1.08996 * 109.47826 * 180.02562 * 27 25 19 55 55 H 1.09002 * 109.46479 * 299.99920 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0978 -0.7974 -1.3344 7 1 3.8539 -1.3058 -2.2557 8 6 4.5341 -1.5242 -0.2352 9 7 5.2276 -0.9307 0.7130 10 14 4.1368 -3.3446 -0.1017 11 1 5.2187 -4.1355 -0.7414 12 1 4.0269 -3.7235 1.3300 13 1 2.8492 -3.6219 -0.7874 14 6 4.2882 1.3998 -2.4130 15 6 5.7919 1.6796 -2.4515 16 7 6.1036 2.5150 -3.6139 17 6 7.3758 2.8908 -3.8520 18 8 8.2743 2.4635 -3.1583 19 6 7.6820 3.8419 -4.9801 20 6 7.2465 3.3749 -6.4026 21 6 8.1164 4.2518 -7.3640 22 6 8.9685 5.1537 -6.4197 23 6 7.9405 6.1459 -5.7951 24 6 7.0885 5.2771 -4.8418 25 6 9.1977 4.1760 -5.2135 26 6 9.8160 4.9026 -4.0175 27 6 10.0052 2.9363 -5.6035 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6885 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8508 0.5685 0.8427 34 1 3.9784 2.1765 0.0902 35 1 5.5322 -1.4384 1.4813 36 1 3.7452 2.3420 -2.3390 37 1 3.9919 0.8802 -3.3242 38 1 6.0882 2.1992 -1.5403 39 1 6.3351 0.7374 -2.5254 40 1 5.3943 2.7983 -4.2118 41 1 7.4616 2.3147 -6.5369 42 1 6.1857 3.5710 -6.5587 43 1 7.4737 4.8642 -7.9965 44 1 8.7639 3.6242 -7.9763 45 1 9.8560 5.6043 -6.8642 46 1 7.3140 6.5833 -6.5725 47 1 8.4570 6.9273 -5.2377 48 1 6.0432 5.2874 -5.1504 49 1 7.1862 5.6314 -3.8156 50 1 9.7943 4.2497 -3.1449 51 1 10.8479 5.1679 -4.2473 52 1 9.2461 5.8079 -3.8081 53 1 9.6036 2.5163 -6.5257 54 1 11.0481 3.2146 -5.7546 55 1 9.9391 2.1946 -4.8075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725755132.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:39 Heat of formation + Delta-G solvation = -82.063845 kcal Electronic energy + Delta-G solvation = -31300.965320 eV Core-core repulsion = 27337.589079 eV Total energy + Delta-G solvation = -3963.376241 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.25866 -39.76703 -38.83817 -37.39456 -35.66173 -33.40562 -32.85204 -31.91778 -31.50141 -30.48184 -28.75459 -27.44528 -27.11423 -25.76158 -25.04904 -23.81641 -23.05830 -22.31103 -21.89919 -20.03481 -19.41553 -18.63624 -17.57022 -17.24123 -16.93504 -16.64282 -16.53492 -16.41601 -16.32765 -15.75940 -15.60511 -15.44242 -15.25302 -14.90202 -14.60178 -14.26222 -13.69525 -13.58254 -13.53979 -13.42436 -13.33989 -13.03387 -12.91498 -12.78268 -12.76091 -12.72795 -12.53276 -12.44461 -12.37273 -12.24425 -12.03809 -11.95635 -11.77300 -11.76269 -11.52564 -11.48012 -11.30948 -10.81177 -10.78591 -10.59451 -10.47580 -10.31430 -9.99289 -8.57443 -7.77802 -5.35248 1.45174 1.48188 1.57950 1.69026 2.25843 2.58492 3.22575 3.29524 3.36726 3.50685 3.56716 3.73720 3.98651 4.19235 4.21382 4.26484 4.29579 4.35894 4.46244 4.49745 4.52454 4.54835 4.55848 4.56500 4.62706 4.63828 4.68194 4.69942 4.76430 4.83879 4.84389 4.92790 4.94413 4.95125 5.00319 5.07528 5.11317 5.13170 5.18534 5.21837 5.25112 5.25820 5.28686 5.43707 5.50387 5.51627 5.58117 5.61753 5.71234 5.83617 6.46091 6.68328 6.69566 7.21699 7.39126 7.90387 8.38029 9.20113 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.002695 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.621481 B =10385.731605 C =11175.565170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.058 3.942 4 C 0.137 3.863 5 N -0.585 5.585 6 C -0.242 4.242 7 H 0.052 0.948 8 C -0.028 4.028 9 N -0.919 5.919 10 Si 0.949 3.051 11 H -0.290 1.290 12 H -0.295 1.295 13 H -0.273 1.273 14 C 0.145 3.855 15 C 0.124 3.876 16 N -0.711 5.711 17 C 0.530 3.470 18 O -0.583 6.583 19 C -0.100 4.100 20 C -0.107 4.107 21 C -0.111 4.111 22 C -0.086 4.086 23 C -0.111 4.111 24 C -0.104 4.104 25 C -0.046 4.046 26 C -0.140 4.140 27 C -0.138 4.138 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.247 0.753 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.029 0.971 39 H 0.023 0.977 40 H 0.412 0.588 41 H 0.052 0.948 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.117 0.883 46 H 0.089 0.911 47 H 0.070 0.930 48 H 0.087 0.913 49 H 0.051 0.949 50 H 0.030 0.970 51 H 0.064 0.936 52 H 0.066 0.934 53 H 0.066 0.934 54 H 0.063 0.937 55 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.202 17.266 -16.495 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.021 4.021 4 C 0.010 3.990 5 N -0.306 5.306 6 C -0.373 4.373 7 H 0.069 0.931 8 C -0.224 4.224 9 N -0.564 5.564 10 Si 0.778 3.222 11 H -0.218 1.218 12 H -0.221 1.221 13 H -0.198 1.198 14 C 0.018 3.982 15 C -0.003 4.003 16 N -0.363 5.363 17 C 0.318 3.682 18 O -0.463 6.463 19 C -0.103 4.103 20 C -0.145 4.145 21 C -0.148 4.148 22 C -0.104 4.104 23 C -0.149 4.149 24 C -0.142 4.142 25 C -0.046 4.046 26 C -0.197 4.197 27 C -0.195 4.195 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.041 0.959 40 H 0.248 0.752 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.135 0.865 46 H 0.107 0.893 47 H 0.088 0.912 48 H 0.106 0.894 49 H 0.070 0.930 50 H 0.049 0.951 51 H 0.083 0.917 52 H 0.085 0.915 53 H 0.085 0.915 54 H 0.082 0.918 55 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.550 16.729 -15.835 23.042 hybrid contribution -0.357 -1.286 0.854 1.585 sum 0.193 15.443 -14.982 21.517 Atomic orbital electron populations 1.22820 0.81590 1.02562 1.00113 1.88148 1.19590 1.28753 1.95193 1.23180 0.96221 0.84029 0.98655 1.21025 0.90132 0.96230 0.91580 1.43850 1.74955 1.02292 1.09456 1.18986 1.36677 0.83020 0.98590 0.93084 1.25566 0.97155 1.00746 0.98981 1.70082 1.37364 1.36833 1.12156 0.85579 0.78058 0.82172 0.76370 1.21766 1.22125 1.19768 1.21147 0.90432 0.95107 0.91470 1.21796 0.99713 0.92243 0.86508 1.45959 1.09036 1.52469 1.28870 1.20598 0.82085 0.80812 0.84743 1.90666 1.46867 1.57267 1.51467 1.22964 0.98784 0.95229 0.93329 1.22972 1.01084 0.99362 0.91085 1.22920 0.97746 0.97594 0.96544 1.23620 0.98145 0.94712 0.93939 1.22613 0.96930 0.96842 0.98471 1.22598 1.00362 0.91223 0.99998 1.22330 0.91378 0.95197 0.95718 1.21771 1.00842 0.99850 0.97223 1.21713 0.99956 0.97038 1.00814 0.93653 0.90139 0.93556 0.93428 0.93730 0.91347 0.93118 0.94390 0.90912 0.92822 0.95236 0.95882 0.75203 0.92895 0.89268 0.89370 0.91228 0.86526 0.89293 0.91175 0.89432 0.92994 0.95078 0.91743 0.91509 0.91513 0.91797 0.95157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.40 -17.02 10.18 -148.98 -1.52 -18.53 16 3 C 0.06 2.21 6.28 71.98 0.45 2.67 16 4 C 0.14 6.30 5.70 86.38 0.49 6.80 16 5 N -0.59 -28.40 2.43 -701.99 -1.71 -30.10 16 6 C -0.24 -13.39 8.98 84.04 0.75 -12.64 16 7 H 0.05 2.85 7.92 -2.91 -0.02 2.82 16 8 C -0.03 -1.59 4.96 84.86 0.42 -1.17 16 9 N -0.92 -55.63 11.36 21.65 0.25 -55.39 16 10 Si 0.95 47.28 29.61 68.60 2.03 49.31 16 11 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 12 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 13 H -0.27 -13.18 7.11 99.48 0.71 -12.48 16 14 C 0.15 5.63 5.79 86.38 0.50 6.13 16 15 C 0.12 5.15 5.98 86.38 0.52 5.66 16 16 N -0.71 -22.32 5.55 -463.06 -2.57 -24.89 16 17 C 0.53 17.69 6.98 87.66 0.61 18.31 16 18 O -0.58 -25.61 13.76 -3.04 -0.04 -25.65 16 19 C -0.10 -2.26 0.72 -49.52 -0.04 -2.30 16 20 C -0.11 -1.85 5.34 32.84 0.18 -1.67 16 21 C -0.11 -1.39 5.58 32.84 0.18 -1.20 16 22 C -0.09 -1.18 4.51 -7.38 -0.03 -1.22 16 23 C -0.11 -1.38 5.54 32.15 0.18 -1.20 16 24 C -0.10 -1.78 5.19 32.15 0.17 -1.61 16 25 C -0.05 -0.99 0.56 -49.41 -0.03 -1.02 16 26 C -0.14 -3.35 8.41 71.98 0.61 -2.74 16 27 C -0.14 -3.35 8.51 71.98 0.61 -2.74 16 28 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 3.78 5.39 -2.39 -0.01 3.77 16 34 H 0.05 2.15 8.07 -2.39 -0.02 2.13 16 35 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 36 H 0.07 2.34 8.03 -2.39 -0.02 2.32 16 37 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 38 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 39 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.41 9.56 8.48 -92.71 -0.79 8.78 16 41 H 0.05 1.09 7.65 -2.38 -0.02 1.07 16 42 H 0.09 1.18 7.80 -2.38 -0.02 1.16 16 43 H 0.09 0.77 7.83 -2.39 -0.02 0.75 16 44 H 0.07 0.86 7.32 -2.39 -0.02 0.84 16 45 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 46 H 0.09 0.76 7.83 -2.39 -0.02 0.74 16 47 H 0.07 0.85 7.27 -2.39 -0.02 0.83 16 48 H 0.09 1.17 7.80 -2.39 -0.02 1.15 16 49 H 0.05 1.06 7.47 -2.39 -0.02 1.04 16 50 H 0.03 0.98 6.75 -2.39 -0.02 0.97 16 51 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 52 H 0.07 1.40 5.31 -2.39 -0.01 1.39 16 53 H 0.07 1.42 5.59 -2.39 -0.01 1.40 16 54 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 55 H 0.03 0.97 6.77 -2.39 -0.02 0.95 16 Total: -1.00 -74.51 415.38 3.34 -71.18 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.07 Total: 21.99 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 6.82 Total: 12.09 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -4.03 Total: -110.38 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -1.56 Total: -44.18 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -74.51 3.34 -71.18 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725755132.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.888 kcal (2) G-P(sol) polarization free energy of solvation -74.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds