Wall clock time and date at job start Tue Mar 31 2020 20:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99624 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.27608 * 10 9 7 12 12 H 1.08998 * 109.46700 * 305.00136 * 11 10 9 13 13 C 1.53004 * 109.47137 * 65.00035 * 11 10 9 14 14 C 1.52996 * 109.47242 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46976 * 299.99985 * 14 13 11 16 16 C 1.53004 * 109.47123 * 59.99942 * 15 14 13 17 17 C 1.52998 * 109.47023 * 185.00121 * 11 10 9 18 18 H 1.08991 * 109.47437 * 59.99960 * 17 11 10 19 19 N 1.46502 * 109.47251 * 299.99565 * 17 11 10 20 20 C 1.34777 * 120.00141 * 155.00373 * 19 17 11 21 21 O 1.21284 * 119.99680 * 359.97438 * 20 19 17 22 22 C 1.50692 * 120.00320 * 180.02562 * 20 19 17 23 23 O 1.42900 * 109.47596 * 179.97438 * 22 20 19 24 24 C 1.42899 * 114.00334 * 180.02562 * 23 22 20 25 25 C 1.53000 * 109.47163 * 180.02562 * 24 23 22 26 26 C 1.54263 * 110.02912 * 292.90533 * 25 24 23 27 27 C 1.54967 * 104.16136 * 217.13588 * 26 25 24 28 28 C 1.54890 * 102.77615 * 37.88906 * 27 26 25 29 29 C 1.53871 * 110.03318 * 175.69021 * 25 24 23 30 30 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 32 32 H 1.09009 * 109.47454 * 300.27377 * 10 9 7 33 33 H 1.08998 * 109.47492 * 60.27672 * 10 9 7 34 34 H 1.09000 * 109.46939 * 300.00085 * 13 11 10 35 35 H 1.09003 * 109.46857 * 59.99834 * 13 11 10 36 36 H 1.08991 * 109.47151 * 179.97438 * 14 13 11 37 37 H 1.08997 * 109.47278 * 59.99660 * 14 13 11 38 38 H 1.08997 * 109.46851 * 299.99936 * 15 14 13 39 39 H 1.08996 * 109.46680 * 179.97438 * 15 14 13 40 40 H 1.09000 * 109.46939 * 180.02562 * 16 15 14 41 41 H 1.09004 * 109.46838 * 59.99735 * 16 15 14 42 42 H 0.97003 * 119.99950 * 335.00309 * 19 17 11 43 43 H 1.08997 * 109.47023 * 300.00076 * 22 20 19 44 44 H 1.09006 * 109.47124 * 59.99394 * 22 20 19 45 45 H 1.09008 * 109.46824 * 300.00324 * 24 23 22 46 46 H 1.08992 * 109.47464 * 60.00177 * 24 23 22 47 47 H 1.08997 * 110.01576 * 54.29387 * 25 24 23 48 48 H 1.09001 * 110.48811 * 335.78446 * 26 25 24 49 49 H 1.09003 * 110.48671 * 98.42711 * 26 25 24 50 50 H 1.08991 * 110.71859 * 279.57306 * 27 26 25 51 51 H 1.09000 * 110.92217 * 156.29121 * 27 26 25 52 52 H 1.08995 * 110.48588 * 203.40449 * 28 27 26 53 53 H 1.09008 * 110.48594 * 80.76061 * 28 27 26 54 54 H 1.08999 * 110.02849 * 238.56721 * 29 25 24 55 55 H 1.09000 * 110.03411 * 359.94849 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 6 1.0637 -4.8197 -0.0108 12 1 0.3793 -4.7167 0.8313 13 6 0.2693 -4.8052 -1.3184 14 6 -0.7254 -5.9676 -1.3239 15 6 0.0349 -7.2900 -1.2037 16 6 0.8293 -7.3045 0.1039 17 6 1.8245 -6.1417 0.1091 18 1 2.3903 -6.1521 1.0405 19 7 2.7443 -6.2802 -1.0228 20 6 3.8436 -7.0514 -0.9073 21 8 4.0715 -7.6303 0.1338 22 6 4.7901 -7.1934 -2.0713 23 8 5.8699 -8.0547 -1.7050 24 6 6.8303 -8.2568 -2.7436 25 6 7.9343 -9.1903 -2.2428 26 6 8.7508 -8.4955 -1.1337 27 6 10.2062 -8.9657 -1.3833 28 6 10.2989 -8.9869 -2.9293 29 6 8.9180 -9.5030 -3.3840 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 2.6849 -3.7105 -0.8952 33 1 2.6843 -3.7187 0.8848 34 1 -0.2726 -3.8633 -1.4038 35 1 0.9538 -4.9081 -2.1605 36 1 -1.2915 -5.9570 -2.2551 37 1 -1.4097 -5.8643 -0.4818 38 1 0.7193 -7.3933 -2.0458 39 1 -0.6737 -8.1181 -1.2071 40 1 1.3713 -8.2464 0.1892 41 1 0.1449 -7.2011 0.9459 42 1 2.5621 -5.8169 -1.8553 43 1 4.2581 -7.6189 -2.9222 44 1 5.1831 -6.2133 -2.3417 45 1 6.3410 -8.7045 -3.6087 46 1 7.2653 -7.2987 -3.0277 47 1 7.4979 -10.1138 -1.8624 48 1 8.6785 -7.4121 -1.2285 49 1 8.4087 -8.8170 -0.1499 50 1 10.3650 -9.9629 -0.9730 51 1 10.9212 -8.2583 -0.9632 52 1 11.0863 -9.6666 -3.2549 53 1 10.4767 -7.9829 -3.3146 54 1 8.9596 -10.5784 -3.5567 55 1 8.6084 -8.9905 -4.2948 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733072294.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:40 Heat of formation + Delta-G solvation = -125.596095 kcal Electronic energy + Delta-G solvation = -30076.104312 eV Core-core repulsion = 26110.840371 eV Total energy + Delta-G solvation = -3965.263941 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.42659 -39.91645 -39.19086 -37.70646 -36.44801 -34.70544 -33.71249 -31.76583 -31.23842 -30.92503 -29.57116 -28.41480 -26.84068 -25.16772 -24.68149 -23.41564 -22.27933 -21.82879 -21.54770 -20.59422 -20.03641 -19.27605 -18.36246 -17.76656 -17.35596 -16.75627 -16.74636 -16.34197 -16.11061 -15.97452 -15.82093 -15.26554 -15.22400 -15.09141 -14.83953 -14.62625 -14.28337 -14.20401 -13.95970 -13.46456 -13.36424 -13.11300 -12.95418 -12.88103 -12.76444 -12.69513 -12.59716 -12.16038 -12.14880 -11.97930 -11.92951 -11.90835 -11.84549 -11.69782 -11.49276 -11.40861 -11.32355 -11.18737 -11.02924 -10.85037 -10.80505 -10.62917 -10.00050 -8.98851 -7.95174 -5.23400 1.46681 1.49260 1.55452 1.61473 1.85873 2.55442 2.98812 3.37923 3.57108 3.69692 3.72059 3.78106 3.81120 3.84926 3.91836 4.09177 4.20637 4.24205 4.26273 4.36975 4.41938 4.43131 4.48638 4.49940 4.51446 4.56996 4.59152 4.67628 4.68963 4.74855 4.76200 4.84622 4.91172 4.91587 5.02434 5.06673 5.09082 5.09440 5.18100 5.24769 5.27986 5.31449 5.34756 5.35733 5.46832 5.47413 5.47639 5.48461 5.53447 5.61406 6.11636 6.27082 6.58117 7.26072 7.34053 8.09572 8.34182 9.27782 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009689 B = 0.002438 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.136731 B =11482.788009 C =13741.570470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.971 3.029 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.740 5.740 10 C 0.161 3.839 11 C -0.088 4.088 12 H 0.076 0.924 13 C -0.104 4.104 14 C -0.114 4.114 15 C -0.107 4.107 16 C -0.123 4.123 17 C 0.164 3.836 18 H 0.062 0.938 19 N -0.705 5.705 20 C 0.511 3.489 21 O -0.573 6.573 22 C 0.045 3.955 23 O -0.393 6.393 24 C 0.063 3.937 25 C -0.092 4.092 26 C -0.118 4.118 27 C -0.127 4.127 28 C -0.123 4.123 29 C -0.113 4.113 30 H 0.252 0.748 31 H 0.376 0.624 32 H 0.027 0.973 33 H 0.001 0.999 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.411 0.589 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.069 0.931 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.048 0.952 50 H 0.068 0.932 51 H 0.067 0.933 52 H 0.076 0.924 53 H 0.068 0.932 54 H 0.075 0.925 55 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.902 -22.008 -11.070 27.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.208 1.208 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.383 5.383 10 C 0.035 3.965 11 C -0.107 4.107 12 H 0.094 0.906 13 C -0.142 4.142 14 C -0.152 4.152 15 C -0.145 4.145 16 C -0.161 4.161 17 C 0.059 3.941 18 H 0.081 0.919 19 N -0.359 5.359 20 C 0.298 3.702 21 O -0.452 6.452 22 C -0.034 4.034 23 O -0.312 6.312 24 C -0.013 4.013 25 C -0.111 4.111 26 C -0.156 4.156 27 C -0.164 4.164 28 C -0.161 4.161 29 C -0.151 4.151 30 H 0.060 0.940 31 H 0.209 0.791 32 H 0.045 0.955 33 H 0.019 0.981 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.249 0.751 43 H 0.129 0.871 44 H 0.116 0.884 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.086 0.914 51 H 0.086 0.914 52 H 0.095 0.905 53 H 0.086 0.914 54 H 0.094 0.906 55 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.237 -22.403 -10.154 27.473 hybrid contribution -0.203 1.641 0.007 1.654 sum 12.033 -20.762 -10.147 26.054 Atomic orbital electron populations 1.69798 1.06432 1.26123 1.59312 1.25515 0.96400 1.00897 1.03661 0.85254 0.77258 0.79385 0.78108 1.20226 1.22015 1.20849 1.19541 0.91311 0.85515 1.41466 0.91182 1.42518 1.05634 1.00852 1.89286 1.20749 0.93635 0.84999 0.97151 1.21453 0.96876 0.92410 0.99971 0.90606 1.21458 0.98022 0.98764 0.95969 1.21533 0.97443 0.93738 1.02438 1.21448 0.98755 0.97420 0.96847 1.21857 0.97515 0.97098 0.99645 1.20753 0.89776 0.94300 0.89272 0.91937 1.45910 1.23441 1.49173 1.17362 1.20811 0.81694 0.78335 0.89410 1.90693 1.75048 1.47776 1.31693 1.22300 0.88886 0.97052 0.95189 1.87981 1.35485 1.67687 1.40059 1.22921 0.89227 0.99328 0.89787 1.21782 0.94547 0.98134 0.96622 1.22373 0.95414 0.99815 0.98017 1.22548 0.95751 1.01366 0.96780 1.22373 0.97071 1.01655 0.94962 1.22121 0.93871 1.01911 0.97151 0.93968 0.79104 0.95527 0.98102 0.93250 0.91317 0.90716 0.92189 0.91418 0.90713 0.92414 0.90594 0.75101 0.87141 0.88439 0.91333 0.92183 0.91304 0.92326 0.93298 0.91366 0.91380 0.90498 0.91370 0.90624 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.48 13.06 21.65 0.28 -58.20 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.25 -13.77 9.99 84.03 0.84 -12.93 16 8 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 9 N -0.74 -37.04 5.33 -343.44 -1.83 -38.87 16 10 C 0.16 6.37 5.42 86.38 0.47 6.84 16 11 C -0.09 -2.68 2.02 -10.79 -0.02 -2.70 16 12 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 13 C -0.10 -2.82 4.90 30.59 0.15 -2.67 16 14 C -0.11 -2.41 5.92 30.60 0.18 -2.23 16 15 C -0.11 -2.01 5.77 30.60 0.18 -1.84 16 16 C -0.12 -2.82 5.61 30.61 0.17 -2.65 16 17 C 0.16 4.47 2.23 45.01 0.10 4.57 16 18 H 0.06 2.04 7.58 -2.39 -0.02 2.02 16 19 N -0.70 -16.73 3.62 -442.47 -1.60 -18.33 16 20 C 0.51 13.76 7.87 87.65 0.69 14.45 16 21 O -0.57 -21.09 16.16 15.99 0.26 -20.84 16 22 C 0.05 0.87 6.42 71.23 0.46 1.33 16 23 O -0.39 -9.42 9.71 -129.94 -1.26 -10.68 16 24 C 0.06 1.03 4.98 71.98 0.36 1.39 16 25 C -0.09 -1.49 3.19 -10.07 -0.03 -1.52 16 26 C -0.12 -2.19 6.21 31.69 0.20 -1.99 16 27 C -0.13 -1.78 6.91 31.91 0.22 -1.56 16 28 C -0.12 -1.36 6.83 31.67 0.22 -1.15 16 29 C -0.11 -1.25 6.46 31.32 0.20 -1.05 16 30 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 31 H 0.38 19.83 6.85 -92.71 -0.63 19.20 16 32 H 0.03 1.01 7.61 -2.38 -0.02 1.00 16 33 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.05 1.66 7.18 -2.39 -0.02 1.64 16 35 H 0.07 1.64 6.51 -2.39 -0.02 1.62 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.17 7.61 -2.39 -0.02 1.15 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.68 8.14 -2.38 -0.02 1.67 16 42 H 0.41 7.99 6.67 -92.71 -0.62 7.37 16 43 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 46 H 0.06 0.86 8.02 -2.39 -0.02 0.84 16 47 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.06 1.16 7.77 -2.39 -0.02 1.14 16 49 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 50 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 53 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 54 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 55 H 0.08 0.69 7.67 -2.39 -0.02 0.67 16 Total: -1.00 -72.26 422.99 2.32 -69.94 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: -0.40 Total: 36.28 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 4.84 Total: -7.37 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -3.15 Total: -115.40 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.00 Total: -31.52 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -72.26 2.32 -69.94 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733072294.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.655 kcal (2) G-P(sol) polarization free energy of solvation -72.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds