Wall clock time and date at job start Tue Mar 31 2020 20:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 119.99567 * 2 1 4 4 H 1.48498 * 109.47193 * 239.99967 * 3 2 1 5 5 H 1.48501 * 109.47283 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46858 * 120.00559 * 3 2 1 7 7 C 1.38815 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99913 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99627 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99800 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47290 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.47127 * 54.99308 * 11 10 9 13 13 C 1.53000 * 109.46781 * 294.99879 * 11 10 9 14 14 C 1.53002 * 109.47085 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47269 * 59.99579 * 14 13 11 16 16 C 1.53000 * 109.47252 * 300.00581 * 15 14 13 17 17 C 1.52997 * 109.47053 * 175.00152 * 11 10 9 18 18 H 1.08990 * 109.47430 * 59.99791 * 17 11 10 19 19 N 1.46499 * 109.46833 * 299.99439 * 17 11 10 20 20 C 1.34784 * 119.99893 * 155.00334 * 19 17 11 21 21 O 1.21283 * 119.99649 * 0.02562 * 20 19 17 22 22 C 1.50697 * 119.99774 * 179.72962 * 20 19 17 23 23 O 1.42905 * 109.47007 * 179.97438 * 22 20 19 24 24 C 1.42897 * 114.00262 * 179.97438 * 23 22 20 25 25 C 1.52998 * 109.47246 * 270.00388 * 24 23 22 26 26 C 1.53004 * 109.46873 * 180.02562 * 25 24 23 27 27 C 1.52999 * 109.47285 * 59.99763 * 26 25 24 28 28 C 1.52997 * 109.46958 * 299.99575 * 27 26 25 29 29 C 1.53004 * 109.46848 * 149.99810 * 24 23 22 30 30 H 0.96989 * 120.00278 * 359.97438 * 1 2 3 31 31 H 0.97003 * 120.00401 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46938 * 59.99913 * 10 9 7 33 33 H 1.08998 * 109.46739 * 300.00353 * 10 9 7 34 34 H 1.08997 * 109.47552 * 299.99744 * 13 11 10 35 35 H 1.09005 * 109.47655 * 59.99939 * 13 11 10 36 36 H 1.08998 * 109.47621 * 180.02562 * 14 13 11 37 37 H 1.09007 * 109.46938 * 299.99813 * 14 13 11 38 38 H 1.09002 * 109.46537 * 60.00437 * 15 14 13 39 39 H 1.09002 * 109.47190 * 180.02562 * 15 14 13 40 40 H 1.09007 * 109.46865 * 299.99712 * 16 15 14 41 41 H 1.08997 * 109.46884 * 180.02562 * 16 15 14 42 42 H 0.97005 * 120.00261 * 335.00546 * 19 17 11 43 43 H 1.09001 * 109.46809 * 299.99238 * 22 20 19 44 44 H 1.08993 * 109.47525 * 59.99679 * 22 20 19 45 45 H 1.09004 * 109.46549 * 30.00087 * 24 23 22 46 46 H 1.09004 * 109.47100 * 299.99361 * 25 24 23 47 47 H 1.08995 * 109.47407 * 59.99800 * 25 24 23 48 48 H 1.09000 * 109.46629 * 299.98984 * 26 25 24 49 49 H 1.08997 * 109.46579 * 179.97438 * 26 25 24 50 50 H 1.08998 * 109.46664 * 180.02562 * 27 26 25 51 51 H 1.08999 * 109.47181 * 60.00078 * 27 26 25 52 52 H 1.08999 * 109.47585 * 300.00256 * 28 27 26 53 53 H 1.08995 * 109.47006 * 180.02562 * 28 27 26 54 54 H 1.08999 * 109.47039 * 299.99909 * 29 24 23 55 55 H 1.08999 * 109.46931 * 60.00494 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0641 -4.8198 -0.0012 12 1 0.3802 -4.7127 -0.8431 13 6 0.2688 -4.8115 1.3059 14 6 -0.7249 -5.9749 1.3056 15 6 0.0365 -7.2960 1.1801 16 6 0.8317 -7.3042 -0.1270 17 6 1.8250 -6.1411 -0.1269 18 1 2.5088 -6.2481 0.7151 19 7 2.5864 -6.1489 -1.3784 20 6 3.6861 -6.9197 -1.4934 21 8 4.0451 -7.6070 -0.5608 22 6 4.4659 -6.9323 -2.7829 23 8 5.5796 -7.8190 -2.6574 24 6 6.3890 -7.9054 -3.8319 25 6 5.8642 -9.0261 -4.7316 26 6 6.7313 -9.1189 -5.9888 27 6 8.1774 -9.4199 -5.5900 28 6 8.7021 -8.2991 -4.6903 29 6 7.8353 -8.2060 -3.4335 30 1 -0.4850 0.8399 0.0004 31 1 0.3556 -2.3881 0.0002 32 1 2.6849 -3.7145 0.8895 33 1 2.6849 -3.7144 -0.8905 34 1 0.9526 -4.9186 2.1479 35 1 -0.2733 -3.8701 1.3956 36 1 -1.2918 -5.9688 2.2365 37 1 -1.4089 -5.8683 0.4635 38 1 0.7203 -7.4026 2.0222 39 1 -0.6716 -8.1248 1.1794 40 1 0.1478 -7.1976 -0.9691 41 1 1.3737 -8.2456 -0.2166 42 1 2.2991 -5.5994 -2.1244 43 1 3.8211 -7.2709 -3.5940 44 1 4.8253 -5.9266 -3.0001 45 1 6.3497 -6.9585 -4.3706 46 1 5.9035 -9.9729 -4.1930 47 1 4.8339 -8.8119 -5.0154 48 1 6.6924 -8.1722 -6.5277 49 1 6.3578 -9.9176 -6.6295 50 1 8.7951 -9.4856 -6.4856 51 1 8.2162 -10.3666 -5.0511 52 1 8.6633 -7.3524 -5.2291 53 1 9.7324 -8.5133 -4.4065 54 1 8.2091 -7.4075 -2.7925 55 1 7.8745 -9.1528 -2.8948 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733075697.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:33 Heat of formation + Delta-G solvation = -132.907916 kcal Electronic energy + Delta-G solvation = -30126.990428 eV Core-core repulsion = 26161.409422 eV Total energy + Delta-G solvation = -3965.581005 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.29847 -40.17328 -39.23718 -37.21636 -36.41551 -35.22437 -33.68869 -31.74801 -31.41999 -31.22363 -30.47123 -28.22462 -26.83087 -24.72977 -23.63710 -23.41023 -23.03124 -21.99920 -21.56088 -20.95266 -20.62605 -19.27948 -18.24179 -17.92044 -17.05198 -16.91987 -16.69851 -16.36298 -15.75763 -15.67078 -15.39645 -15.32470 -15.15573 -14.93631 -14.85914 -14.62939 -14.51590 -14.11444 -13.86303 -13.74797 -13.52393 -13.31765 -13.17576 -13.06897 -12.92306 -12.72484 -12.68520 -12.22779 -12.12861 -12.06633 -11.98666 -11.93438 -11.85447 -11.53855 -11.49782 -11.45866 -11.34696 -11.25321 -11.14194 -10.94003 -10.72363 -10.42229 -10.01390 -8.98494 -7.94841 -5.22996 1.47013 1.49444 1.55650 1.58093 1.81617 2.55664 2.94080 3.38230 3.53873 3.68770 3.77779 3.78286 3.85508 3.93616 4.06603 4.09638 4.15220 4.22053 4.26105 4.28561 4.33797 4.36301 4.39188 4.45827 4.49943 4.52693 4.55906 4.57089 4.57849 4.67825 4.85287 4.88191 4.94217 5.03659 5.04197 5.12034 5.12252 5.15857 5.22308 5.23485 5.24300 5.29865 5.30700 5.30937 5.38570 5.43282 5.47571 5.49883 5.51107 5.60647 6.15129 6.27394 6.56085 7.23094 7.34514 8.09658 8.34769 9.28073 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009460 B = 0.002527 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.237868 B =11077.557165 C =13497.582445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.970 3.030 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.739 5.739 10 C 0.160 3.840 11 C -0.084 4.084 12 H 0.083 0.917 13 C -0.106 4.106 14 C -0.113 4.113 15 C -0.111 4.111 16 C -0.118 4.118 17 C 0.163 3.837 18 H 0.063 0.937 19 N -0.711 5.711 20 C 0.511 3.489 21 O -0.572 6.572 22 C 0.045 3.955 23 O -0.388 6.388 24 C 0.083 3.917 25 C -0.139 4.139 26 C -0.114 4.114 27 C -0.123 4.123 28 C -0.112 4.112 29 C -0.118 4.118 30 H 0.252 0.748 31 H 0.377 0.623 32 H 0.002 0.998 33 H 0.026 0.974 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.414 0.586 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.076 0.924 46 H 0.057 0.943 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.076 0.924 51 H 0.058 0.942 52 H 0.071 0.929 53 H 0.074 0.926 54 H 0.060 0.940 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.913 -20.832 -12.188 25.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.209 1.209 7 C -0.378 4.378 8 H 0.087 0.913 9 N -0.382 5.382 10 C 0.033 3.967 11 C -0.103 4.103 12 H 0.101 0.899 13 C -0.144 4.144 14 C -0.151 4.151 15 C -0.149 4.149 16 C -0.157 4.157 17 C 0.058 3.942 18 H 0.081 0.919 19 N -0.364 5.364 20 C 0.298 3.702 21 O -0.451 6.451 22 C -0.034 4.034 23 O -0.308 6.308 24 C 0.026 3.974 25 C -0.177 4.177 26 C -0.152 4.152 27 C -0.160 4.160 28 C -0.150 4.150 29 C -0.155 4.155 30 H 0.061 0.939 31 H 0.209 0.791 32 H 0.020 0.980 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.250 0.750 43 H 0.126 0.874 44 H 0.116 0.884 45 H 0.094 0.906 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.089 0.911 49 H 0.092 0.908 50 H 0.095 0.905 51 H 0.077 0.923 52 H 0.089 0.911 53 H 0.093 0.907 54 H 0.079 0.921 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.380 -21.325 -11.366 25.921 hybrid contribution -0.117 1.598 -0.064 1.603 sum 9.264 -19.727 -11.430 24.609 Atomic orbital electron populations 1.69787 1.06404 1.26140 1.59291 1.25499 0.96385 1.00839 1.03649 0.85267 0.77273 0.79447 0.78100 1.20253 1.21999 1.20871 1.19530 0.91286 0.85513 1.41491 0.91252 1.42503 1.05625 1.00776 1.89290 1.20768 0.93680 0.85063 0.97198 1.21424 0.96834 0.92357 0.99706 0.89914 1.21444 0.97961 0.98979 0.96032 1.21537 0.97380 0.93459 1.02681 1.21478 0.98889 0.97847 0.96705 1.21818 0.97468 0.96986 0.99386 1.20809 0.92426 0.94630 0.86315 0.91900 1.45930 1.27146 1.45995 1.17313 1.20802 0.80591 0.78992 0.89779 1.90690 1.69216 1.43093 1.42072 1.22341 0.89831 0.96342 0.94882 1.88013 1.39707 1.64944 1.38089 1.22387 0.90644 0.98962 0.85384 1.22028 1.00052 0.98929 0.96696 1.21499 0.94786 1.02679 0.96208 1.21592 0.96216 0.98383 0.99815 1.21492 0.98871 0.99772 0.94861 1.21596 0.93041 1.02077 0.98835 0.93949 0.79052 0.98005 0.95627 0.92928 0.92935 0.91016 0.91185 0.92507 0.89882 0.90340 0.92493 0.74985 0.87441 0.88366 0.90644 0.92368 0.91316 0.91055 0.90815 0.90507 0.92275 0.91074 0.90725 0.92102 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.14 13.06 21.65 0.28 -57.86 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.97 45.87 29.55 68.60 2.03 47.90 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 7 C -0.25 -13.71 9.99 84.03 0.84 -12.87 16 8 H 0.07 3.76 7.83 -2.92 -0.02 3.74 16 9 N -0.74 -36.78 5.33 -343.45 -1.83 -38.61 16 10 C 0.16 6.32 5.57 86.38 0.48 6.80 16 11 C -0.08 -2.57 1.80 -10.79 -0.02 -2.59 16 12 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 13 C -0.11 -3.24 5.08 30.59 0.16 -3.09 16 14 C -0.11 -2.64 5.92 30.59 0.18 -2.46 16 15 C -0.11 -2.38 5.92 30.59 0.18 -2.20 16 16 C -0.12 -2.73 5.49 30.58 0.17 -2.56 16 17 C 0.16 4.48 1.90 44.97 0.09 4.57 16 18 H 0.06 2.07 7.58 -2.39 -0.02 2.06 16 19 N -0.71 -17.43 4.31 -442.62 -1.91 -19.33 16 20 C 0.51 14.18 7.87 87.65 0.69 14.87 16 21 O -0.57 -21.32 16.16 16.00 0.26 -21.06 16 22 C 0.05 0.93 6.23 71.24 0.44 1.37 16 23 O -0.39 -9.68 9.52 -129.94 -1.24 -10.92 16 24 C 0.08 1.47 2.61 30.59 0.08 1.55 16 25 C -0.14 -2.05 5.54 30.60 0.17 -1.88 16 26 C -0.11 -1.22 5.92 30.60 0.18 -1.04 16 27 C -0.12 -1.29 5.92 30.59 0.18 -1.11 16 28 C -0.11 -1.33 5.92 30.58 0.18 -1.15 16 29 C -0.12 -2.01 5.57 30.58 0.17 -1.84 16 30 H 0.25 14.73 8.31 -92.72 -0.77 13.96 16 31 H 0.38 19.69 6.85 -92.71 -0.63 19.05 16 32 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.03 0.99 7.30 -2.39 -0.02 0.97 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.90 7.18 -2.38 -0.02 1.88 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.54 8.14 -2.38 -0.02 1.53 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.41 8.22 8.39 -92.70 -0.78 7.45 16 43 H 0.11 1.51 7.87 -2.39 -0.02 1.49 16 44 H 0.10 1.64 8.08 -2.39 -0.02 1.62 16 45 H 0.08 1.10 7.79 -2.38 -0.02 1.08 16 46 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 47 H 0.07 0.92 7.87 -2.39 -0.02 0.90 16 48 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 53 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 54 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 55 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -71.75 423.62 1.67 -70.08 By element: Atomic # 1 Polarization: 37.58 SS G_CDS: -0.56 Total: 37.01 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: 4.64 Total: -7.20 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -3.45 Total: -115.81 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.98 Total: -31.98 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -71.75 1.67 -70.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733075697.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.828 kcal (2) G-P(sol) polarization free energy of solvation -71.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds