Wall clock time and date at job start Tue Mar 31 2020 20:43:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31623 * 1
3 3 Si 1.86796 * 119.99567 * 2 1
4 4 H 1.48498 * 109.47193 * 239.99967 * 3 2 1
5 5 H 1.48501 * 109.47283 * 0.02562 * 3 2 1
6 6 H 1.48502 * 109.46858 * 120.00559 * 3 2 1
7 7 C 1.38815 * 120.00328 * 180.02562 * 2 1 3
8 8 H 1.07991 * 119.99913 * 179.97438 * 7 2 1
9 9 N 1.36938 * 119.99627 * 359.97438 * 7 2 1
10 10 C 1.46504 * 119.99800 * 180.02562 * 9 7 2
11 11 C 1.52998 * 109.47290 * 180.02562 * 10 9 7
12 12 H 1.08995 * 109.47127 * 54.99308 * 11 10 9
13 13 C 1.53000 * 109.46781 * 294.99879 * 11 10 9
14 14 C 1.53002 * 109.47085 * 180.02562 * 13 11 10
15 15 C 1.53000 * 109.47269 * 59.99579 * 14 13 11
16 16 C 1.53000 * 109.47252 * 300.00581 * 15 14 13
17 17 C 1.52997 * 109.47053 * 175.00152 * 11 10 9
18 18 H 1.08990 * 109.47430 * 59.99791 * 17 11 10
19 19 N 1.46499 * 109.46833 * 299.99439 * 17 11 10
20 20 C 1.34784 * 119.99893 * 155.00334 * 19 17 11
21 21 O 1.21283 * 119.99649 * 0.02562 * 20 19 17
22 22 C 1.50697 * 119.99774 * 179.72962 * 20 19 17
23 23 O 1.42905 * 109.47007 * 179.97438 * 22 20 19
24 24 C 1.42897 * 114.00262 * 179.97438 * 23 22 20
25 25 C 1.52998 * 109.47246 * 270.00388 * 24 23 22
26 26 C 1.53004 * 109.46873 * 180.02562 * 25 24 23
27 27 C 1.52999 * 109.47285 * 59.99763 * 26 25 24
28 28 C 1.52997 * 109.46958 * 299.99575 * 27 26 25
29 29 C 1.53004 * 109.46848 * 149.99810 * 24 23 22
30 30 H 0.96989 * 120.00278 * 359.97438 * 1 2 3
31 31 H 0.97003 * 120.00401 * 359.97438 * 9 7 2
32 32 H 1.09001 * 109.46938 * 59.99913 * 10 9 7
33 33 H 1.08998 * 109.46739 * 300.00353 * 10 9 7
34 34 H 1.08997 * 109.47552 * 299.99744 * 13 11 10
35 35 H 1.09005 * 109.47655 * 59.99939 * 13 11 10
36 36 H 1.08998 * 109.47621 * 180.02562 * 14 13 11
37 37 H 1.09007 * 109.46938 * 299.99813 * 14 13 11
38 38 H 1.09002 * 109.46537 * 60.00437 * 15 14 13
39 39 H 1.09002 * 109.47190 * 180.02562 * 15 14 13
40 40 H 1.09007 * 109.46865 * 299.99712 * 16 15 14
41 41 H 1.08997 * 109.46884 * 180.02562 * 16 15 14
42 42 H 0.97005 * 120.00261 * 335.00546 * 19 17 11
43 43 H 1.09001 * 109.46809 * 299.99238 * 22 20 19
44 44 H 1.08993 * 109.47525 * 59.99679 * 22 20 19
45 45 H 1.09004 * 109.46549 * 30.00087 * 24 23 22
46 46 H 1.09004 * 109.47100 * 299.99361 * 25 24 23
47 47 H 1.08995 * 109.47407 * 59.99800 * 25 24 23
48 48 H 1.09000 * 109.46629 * 299.98984 * 26 25 24
49 49 H 1.08997 * 109.46579 * 179.97438 * 26 25 24
50 50 H 1.08998 * 109.46664 * 180.02562 * 27 26 25
51 51 H 1.08999 * 109.47181 * 60.00078 * 27 26 25
52 52 H 1.08999 * 109.47585 * 300.00256 * 28 27 26
53 53 H 1.08995 * 109.47006 * 180.02562 * 28 27 26
54 54 H 1.08999 * 109.47039 * 299.99909 * 29 24 23
55 55 H 1.08999 * 109.46931 * 60.00494 * 29 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.1038 1.6965 -1.2125
5 1 1.2850 2.7464 0.0006
6 1 3.1039 1.6964 1.2125
7 6 2.0104 -1.2021 -0.0005
8 1 3.0903 -1.2021 -0.0010
9 7 1.3257 -2.3880 -0.0005
10 6 2.0582 -3.6568 -0.0005
11 6 1.0641 -4.8198 -0.0012
12 1 0.3802 -4.7127 -0.8431
13 6 0.2688 -4.8115 1.3059
14 6 -0.7249 -5.9749 1.3056
15 6 0.0365 -7.2960 1.1801
16 6 0.8317 -7.3042 -0.1270
17 6 1.8250 -6.1411 -0.1269
18 1 2.5088 -6.2481 0.7151
19 7 2.5864 -6.1489 -1.3784
20 6 3.6861 -6.9197 -1.4934
21 8 4.0451 -7.6070 -0.5608
22 6 4.4659 -6.9323 -2.7829
23 8 5.5796 -7.8190 -2.6574
24 6 6.3890 -7.9054 -3.8319
25 6 5.8642 -9.0261 -4.7316
26 6 6.7313 -9.1189 -5.9888
27 6 8.1774 -9.4199 -5.5900
28 6 8.7021 -8.2991 -4.6903
29 6 7.8353 -8.2060 -3.4335
30 1 -0.4850 0.8399 0.0004
31 1 0.3556 -2.3881 0.0002
32 1 2.6849 -3.7145 0.8895
33 1 2.6849 -3.7144 -0.8905
34 1 0.9526 -4.9186 2.1479
35 1 -0.2733 -3.8701 1.3956
36 1 -1.2918 -5.9688 2.2365
37 1 -1.4089 -5.8683 0.4635
38 1 0.7203 -7.4026 2.0222
39 1 -0.6716 -8.1248 1.1794
40 1 0.1478 -7.1976 -0.9691
41 1 1.3737 -8.2456 -0.2166
42 1 2.2991 -5.5994 -2.1244
43 1 3.8211 -7.2709 -3.5940
44 1 4.8253 -5.9266 -3.0001
45 1 6.3497 -6.9585 -4.3706
46 1 5.9035 -9.9729 -4.1930
47 1 4.8339 -8.8119 -5.0154
48 1 6.6924 -8.1722 -6.5277
49 1 6.3578 -9.9176 -6.6295
50 1 8.7951 -9.4856 -6.4856
51 1 8.2162 -10.3666 -5.0511
52 1 8.6633 -7.3524 -5.2291
53 1 9.7324 -8.5133 -4.4065
54 1 8.2091 -7.4075 -2.7925
55 1 7.8745 -9.1528 -2.8948
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001733075697.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:43:33
Heat of formation + Delta-G solvation = -132.907916 kcal
Electronic energy + Delta-G solvation = -30126.990428 eV
Core-core repulsion = 26161.409422 eV
Total energy + Delta-G solvation = -3965.581005 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.29 seconds
Orbital eigenvalues (eV)
-41.29847 -40.17328 -39.23718 -37.21636 -36.41551 -35.22437 -33.68869 -31.74801
-31.41999 -31.22363 -30.47123 -28.22462 -26.83087 -24.72977 -23.63710 -23.41023
-23.03124 -21.99920 -21.56088 -20.95266 -20.62605 -19.27948 -18.24179 -17.92044
-17.05198 -16.91987 -16.69851 -16.36298 -15.75763 -15.67078 -15.39645 -15.32470
-15.15573 -14.93631 -14.85914 -14.62939 -14.51590 -14.11444 -13.86303 -13.74797
-13.52393 -13.31765 -13.17576 -13.06897 -12.92306 -12.72484 -12.68520 -12.22779
-12.12861 -12.06633 -11.98666 -11.93438 -11.85447 -11.53855 -11.49782 -11.45866
-11.34696 -11.25321 -11.14194 -10.94003 -10.72363 -10.42229 -10.01390 -8.98494
-7.94841 -5.22996 1.47013 1.49444 1.55650 1.58093 1.81617 2.55664
2.94080 3.38230 3.53873 3.68770 3.77779 3.78286 3.85508 3.93616
4.06603 4.09638 4.15220 4.22053 4.26105 4.28561 4.33797 4.36301
4.39188 4.45827 4.49943 4.52693 4.55906 4.57089 4.57849 4.67825
4.85287 4.88191 4.94217 5.03659 5.04197 5.12034 5.12252 5.15857
5.22308 5.23485 5.24300 5.29865 5.30700 5.30937 5.38570 5.43282
5.47571 5.49883 5.51107 5.60647 6.15129 6.27394 6.56085 7.23094
7.34514 8.09658 8.34769 9.28073
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.009460 B = 0.002527 C = 0.002074
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2959.237868 B =11077.557165 C =13497.582445
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.966 5.966
2 C -0.071 4.071
3 Si 0.970 3.030
4 H -0.277 1.277
5 H -0.294 1.294
6 H -0.282 1.282
7 C -0.246 4.246
8 H 0.070 0.930
9 N -0.739 5.739
10 C 0.160 3.840
11 C -0.084 4.084
12 H 0.083 0.917
13 C -0.106 4.106
14 C -0.113 4.113
15 C -0.111 4.111
16 C -0.118 4.118
17 C 0.163 3.837
18 H 0.063 0.937
19 N -0.711 5.711
20 C 0.511 3.489
21 O -0.572 6.572
22 C 0.045 3.955
23 O -0.388 6.388
24 C 0.083 3.917
25 C -0.139 4.139
26 C -0.114 4.114
27 C -0.123 4.123
28 C -0.112 4.112
29 C -0.118 4.118
30 H 0.252 0.748
31 H 0.377 0.623
32 H 0.002 0.998
33 H 0.026 0.974
34 H 0.052 0.948
35 H 0.052 0.948
36 H 0.071 0.929
37 H 0.069 0.931
38 H 0.056 0.944
39 H 0.083 0.917
40 H 0.078 0.922
41 H 0.056 0.944
42 H 0.414 0.586
43 H 0.108 0.892
44 H 0.099 0.901
45 H 0.076 0.924
46 H 0.057 0.943
47 H 0.068 0.932
48 H 0.071 0.929
49 H 0.073 0.927
50 H 0.076 0.924
51 H 0.058 0.942
52 H 0.071 0.929
53 H 0.074 0.926
54 H 0.060 0.940
55 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.913 -20.832 -12.188 25.729
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.616 5.616
2 C -0.264 4.264
3 Si 0.799 3.201
4 H -0.203 1.203
5 H -0.220 1.220
6 H -0.209 1.209
7 C -0.378 4.378
8 H 0.087 0.913
9 N -0.382 5.382
10 C 0.033 3.967
11 C -0.103 4.103
12 H 0.101 0.899
13 C -0.144 4.144
14 C -0.151 4.151
15 C -0.149 4.149
16 C -0.157 4.157
17 C 0.058 3.942
18 H 0.081 0.919
19 N -0.364 5.364
20 C 0.298 3.702
21 O -0.451 6.451
22 C -0.034 4.034
23 O -0.308 6.308
24 C 0.026 3.974
25 C -0.177 4.177
26 C -0.152 4.152
27 C -0.160 4.160
28 C -0.150 4.150
29 C -0.155 4.155
30 H 0.061 0.939
31 H 0.209 0.791
32 H 0.020 0.980
33 H 0.044 0.956
34 H 0.071 0.929
35 H 0.071 0.929
36 H 0.090 0.910
37 H 0.088 0.912
38 H 0.075 0.925
39 H 0.101 0.899
40 H 0.097 0.903
41 H 0.075 0.925
42 H 0.250 0.750
43 H 0.126 0.874
44 H 0.116 0.884
45 H 0.094 0.906
46 H 0.076 0.924
47 H 0.087 0.913
48 H 0.089 0.911
49 H 0.092 0.908
50 H 0.095 0.905
51 H 0.077 0.923
52 H 0.089 0.911
53 H 0.093 0.907
54 H 0.079 0.921
55 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 9.380 -21.325 -11.366 25.921
hybrid contribution -0.117 1.598 -0.064 1.603
sum 9.264 -19.727 -11.430 24.609
Atomic orbital electron populations
1.69787 1.06404 1.26140 1.59291 1.25499 0.96385 1.00839 1.03649
0.85267 0.77273 0.79447 0.78100 1.20253 1.21999 1.20871 1.19530
0.91286 0.85513 1.41491 0.91252 1.42503 1.05625 1.00776 1.89290
1.20768 0.93680 0.85063 0.97198 1.21424 0.96834 0.92357 0.99706
0.89914 1.21444 0.97961 0.98979 0.96032 1.21537 0.97380 0.93459
1.02681 1.21478 0.98889 0.97847 0.96705 1.21818 0.97468 0.96986
0.99386 1.20809 0.92426 0.94630 0.86315 0.91900 1.45930 1.27146
1.45995 1.17313 1.20802 0.80591 0.78992 0.89779 1.90690 1.69216
1.43093 1.42072 1.22341 0.89831 0.96342 0.94882 1.88013 1.39707
1.64944 1.38089 1.22387 0.90644 0.98962 0.85384 1.22028 1.00052
0.98929 0.96696 1.21499 0.94786 1.02679 0.96208 1.21592 0.96216
0.98383 0.99815 1.21492 0.98871 0.99772 0.94861 1.21596 0.93041
1.02077 0.98835 0.93949 0.79052 0.98005 0.95627 0.92928 0.92935
0.91016 0.91185 0.92507 0.89882 0.90340 0.92493 0.74985 0.87441
0.88366 0.90644 0.92368 0.91316 0.91055 0.90815 0.90507 0.92275
0.91074 0.90725 0.92102 0.92291
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -58.14 13.06 21.65 0.28 -57.86 16
2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16
3 Si 0.97 45.87 29.55 68.60 2.03 47.90 16
4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16
5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16
6 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16
7 C -0.25 -13.71 9.99 84.03 0.84 -12.87 16
8 H 0.07 3.76 7.83 -2.92 -0.02 3.74 16
9 N -0.74 -36.78 5.33 -343.45 -1.83 -38.61 16
10 C 0.16 6.32 5.57 86.38 0.48 6.80 16
11 C -0.08 -2.57 1.80 -10.79 -0.02 -2.59 16
12 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16
13 C -0.11 -3.24 5.08 30.59 0.16 -3.09 16
14 C -0.11 -2.64 5.92 30.59 0.18 -2.46 16
15 C -0.11 -2.38 5.92 30.59 0.18 -2.20 16
16 C -0.12 -2.73 5.49 30.58 0.17 -2.56 16
17 C 0.16 4.48 1.90 44.97 0.09 4.57 16
18 H 0.06 2.07 7.58 -2.39 -0.02 2.06 16
19 N -0.71 -17.43 4.31 -442.62 -1.91 -19.33 16
20 C 0.51 14.18 7.87 87.65 0.69 14.87 16
21 O -0.57 -21.32 16.16 16.00 0.26 -21.06 16
22 C 0.05 0.93 6.23 71.24 0.44 1.37 16
23 O -0.39 -9.68 9.52 -129.94 -1.24 -10.92 16
24 C 0.08 1.47 2.61 30.59 0.08 1.55 16
25 C -0.14 -2.05 5.54 30.60 0.17 -1.88 16
26 C -0.11 -1.22 5.92 30.60 0.18 -1.04 16
27 C -0.12 -1.29 5.92 30.59 0.18 -1.11 16
28 C -0.11 -1.33 5.92 30.58 0.18 -1.15 16
29 C -0.12 -2.01 5.57 30.58 0.17 -1.84 16
30 H 0.25 14.73 8.31 -92.72 -0.77 13.96 16
31 H 0.38 19.69 6.85 -92.71 -0.63 19.05 16
32 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16
33 H 0.03 0.99 7.30 -2.39 -0.02 0.97 16
34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16
35 H 0.05 1.90 7.18 -2.38 -0.02 1.88 16
36 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16
37 H 0.07 1.54 8.14 -2.38 -0.02 1.53 16
38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16
39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16
40 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16
41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16
42 H 0.41 8.22 8.39 -92.70 -0.78 7.45 16
43 H 0.11 1.51 7.87 -2.39 -0.02 1.49 16
44 H 0.10 1.64 8.08 -2.39 -0.02 1.62 16
45 H 0.08 1.10 7.79 -2.38 -0.02 1.08 16
46 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16
47 H 0.07 0.92 7.87 -2.39 -0.02 0.90 16
48 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16
49 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16
50 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16
51 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16
52 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16
53 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16
54 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
55 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16
Total: -1.00 -71.75 423.62 1.67 -70.08
By element:
Atomic # 1 Polarization: 37.58 SS G_CDS: -0.56 Total: 37.01 kcal
Atomic # 6 Polarization: -11.84 SS G_CDS: 4.64 Total: -7.20 kcal
Atomic # 7 Polarization: -112.35 SS G_CDS: -3.45 Total: -115.81 kcal
Atomic # 8 Polarization: -31.00 SS G_CDS: -0.98 Total: -31.98 kcal
Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal
Total: -71.75 1.67 -70.08 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733075697.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.828 kcal
(2) G-P(sol) polarization free energy of solvation -71.747 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.574 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.667 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.080 kcal
(6) G-S(sol) free energy of system = (1) + (5) -132.908 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.30 seconds