Wall clock time and date at job start Tue Mar 31 2020 20:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86795 * 120.00244 * 2 1 4 4 H 1.48501 * 109.47017 * 269.99502 * 3 2 1 5 5 H 1.48495 * 109.47198 * 29.99827 * 3 2 1 6 6 H 1.48497 * 109.47167 * 149.99848 * 3 2 1 7 7 C 1.38817 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00184 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99961 * 179.97438 * 7 2 1 10 10 C 1.46492 * 120.00079 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47438 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.47252 * 54.99880 * 11 10 9 13 13 C 1.53002 * 109.47345 * 295.00057 * 11 10 9 14 14 C 1.52995 * 109.47193 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47264 * 60.00245 * 14 13 11 16 16 C 1.52996 * 109.47046 * 299.99762 * 15 14 13 17 17 C 1.53003 * 109.47320 * 60.00097 * 16 15 14 18 18 H 1.08998 * 109.46941 * 180.02562 * 17 16 15 19 19 N 1.46491 * 109.47208 * 59.99728 * 17 16 15 20 20 C 1.34778 * 119.99700 * 85.00131 * 19 17 16 21 21 O 1.21281 * 120.00058 * 0.02562 * 20 19 17 22 22 C 1.50703 * 120.00066 * 180.02562 * 20 19 17 23 23 O 1.42904 * 109.47346 * 180.02562 * 22 20 19 24 24 C 1.42895 * 113.99892 * 180.02562 * 23 22 20 25 25 C 1.52997 * 109.46920 * 150.00077 * 24 23 22 26 26 C 1.53006 * 109.47127 * 180.02562 * 25 24 23 27 27 C 1.52999 * 109.46626 * 299.99539 * 26 25 24 28 28 C 1.52997 * 109.46991 * 60.00378 * 27 26 25 29 29 C 1.52996 * 109.47131 * 299.99311 * 28 27 26 30 30 H 0.97004 * 120.00012 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99824 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47233 * 59.99664 * 10 9 7 33 33 H 1.09005 * 109.47256 * 300.00558 * 10 9 7 34 34 H 1.08996 * 109.46889 * 59.99315 * 13 11 10 35 35 H 1.08996 * 109.46837 * 300.00116 * 13 11 10 36 36 H 1.08995 * 109.47548 * 299.99433 * 14 13 11 37 37 H 1.09011 * 109.46723 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.47324 * 179.97438 * 15 14 13 39 39 H 1.09006 * 109.47274 * 59.99872 * 15 14 13 40 40 H 1.09006 * 109.47173 * 300.00171 * 16 15 14 41 41 H 1.09004 * 109.47405 * 180.02562 * 16 15 14 42 42 H 0.96997 * 120.00907 * 265.00247 * 19 17 16 43 43 H 1.09003 * 109.47103 * 60.00162 * 22 20 19 44 44 H 1.09000 * 109.47064 * 300.00617 * 22 20 19 45 45 H 1.08996 * 109.47554 * 30.00144 * 24 23 22 46 46 H 1.09001 * 109.47502 * 60.00157 * 25 24 23 47 47 H 1.09001 * 109.47289 * 299.99954 * 25 24 23 48 48 H 1.08993 * 109.46955 * 60.00011 * 26 25 24 49 49 H 1.09000 * 109.47050 * 179.97438 * 26 25 24 50 50 H 1.09002 * 109.46719 * 180.02562 * 27 26 25 51 51 H 1.08993 * 109.47839 * 299.99931 * 27 26 25 52 52 H 1.09001 * 109.47289 * 179.97438 * 28 27 26 53 53 H 1.09000 * 109.47611 * 59.99933 * 28 27 26 54 54 H 1.08996 * 109.47452 * 300.00000 * 29 28 27 55 55 H 1.09000 * 109.47054 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 6 5.6162 -2.1915 0.0000 12 1 5.8658 -1.5456 0.8418 13 6 6.0063 -1.4990 -1.3073 14 6 7.5104 -1.2190 -1.3070 15 6 8.2748 -2.5383 -1.1811 16 6 7.8847 -3.2309 0.1262 17 6 6.3806 -3.5110 0.1260 18 1 6.1027 -4.0039 1.0576 19 7 6.0457 -4.3792 -1.0053 20 6 6.1637 -5.7165 -0.8865 21 8 6.5467 -6.2011 0.1573 22 6 5.8198 -6.6098 -2.0505 23 8 6.0243 -7.9748 -1.6802 24 6 5.7259 -8.9097 -2.7189 25 6 6.6132 -10.1462 -2.5623 26 6 6.2943 -11.1470 -3.6748 27 6 4.8238 -11.5596 -3.5833 28 6 3.9365 -10.3231 -3.7399 29 6 4.2554 -9.3224 -2.6274 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3623 -0.0004 32 1 3.8483 -3.0428 -0.8897 33 1 3.8489 -3.0424 0.8902 34 1 5.4620 -0.5589 -1.3969 35 1 5.7567 -2.1449 -2.1491 36 1 7.7596 -0.5729 -0.4653 37 1 7.7884 -0.7260 -2.2387 38 1 9.3464 -2.3389 -1.1813 39 1 8.0256 -3.1844 -2.0229 40 1 8.1339 -2.5848 0.9681 41 1 8.4296 -4.1707 0.2163 42 1 5.7390 -3.9918 -1.8400 43 1 6.4585 -6.3634 -2.8987 44 1 4.7759 -6.4610 -2.3266 45 1 5.9138 -8.4481 -3.6882 46 1 6.4254 -10.6079 -1.5930 47 1 7.6608 -9.8524 -2.6279 48 1 6.4825 -10.6851 -4.6440 49 1 6.9267 -12.0278 -3.5636 50 1 4.5967 -12.2730 -4.3756 51 1 4.6356 -12.0215 -2.6142 52 1 2.8889 -10.6171 -3.6751 53 1 4.1246 -9.8612 -4.7091 54 1 4.0673 -9.7842 -1.6582 55 1 3.6230 -8.4416 -2.7387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733075700.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:38 Heat of formation + Delta-G solvation = -127.040574 kcal Electronic energy + Delta-G solvation = -30480.458063 eV Core-core repulsion = 26515.131484 eV Total energy + Delta-G solvation = -3965.326578 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.46715 -40.21403 -39.21137 -37.21046 -36.60338 -34.71886 -33.86958 -31.76290 -31.65232 -31.49030 -30.63846 -28.35293 -26.94528 -24.40380 -23.59790 -23.39474 -23.08479 -22.27740 -21.93375 -20.79221 -20.08113 -19.72051 -18.41737 -17.82402 -17.07224 -16.75424 -16.64587 -16.33253 -16.14734 -15.69082 -15.56012 -15.35285 -15.11541 -14.90000 -14.86336 -14.67852 -14.52786 -14.13642 -13.91947 -13.81515 -13.57600 -13.22232 -13.13681 -13.06399 -13.02190 -12.92435 -12.73096 -12.58833 -12.13115 -12.07287 -11.98689 -11.93579 -11.85603 -11.51140 -11.46888 -11.41719 -11.25441 -11.21147 -11.05714 -10.89922 -10.80405 -10.42977 -10.01516 -9.30342 -8.03524 -5.37387 1.37167 1.41487 1.48869 1.59728 1.84215 2.47943 2.95858 3.27665 3.42438 3.69869 3.75552 3.78286 3.82009 3.85012 3.94944 4.06352 4.16463 4.21113 4.22236 4.28028 4.31124 4.34062 4.36455 4.45069 4.47405 4.55531 4.56876 4.57664 4.66442 4.67480 4.72669 4.89414 4.94403 5.01059 5.03300 5.07727 5.11855 5.16498 5.22381 5.23171 5.26169 5.28993 5.30701 5.34256 5.38566 5.43968 5.49882 5.50644 5.60237 5.74154 6.15640 6.20135 6.56552 7.07155 7.24718 7.82310 8.03251 9.18233 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011885 B = 0.002540 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.293031 B =11022.521676 C =12796.734250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.065 4.065 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.298 1.298 6 H -0.251 1.251 7 C -0.236 4.236 8 H 0.051 0.949 9 N -0.753 5.753 10 C 0.163 3.837 11 C -0.092 4.092 12 H 0.085 0.915 13 C -0.111 4.111 14 C -0.114 4.114 15 C -0.109 4.109 16 C -0.122 4.122 17 C 0.162 3.838 18 H 0.063 0.937 19 N -0.705 5.705 20 C 0.511 3.489 21 O -0.573 6.573 22 C 0.044 3.956 23 O -0.388 6.388 24 C 0.086 3.914 25 C -0.116 4.116 26 C -0.111 4.111 27 C -0.123 4.123 28 C -0.114 4.114 29 C -0.144 4.144 30 H 0.258 0.742 31 H 0.368 0.632 32 H 0.030 0.970 33 H 0.005 0.995 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.412 0.588 43 H 0.112 0.888 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.077 0.923 51 H 0.055 0.945 52 H 0.067 0.933 53 H 0.074 0.926 54 H 0.053 0.947 55 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.082 -16.456 -12.252 28.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.256 4.256 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.225 1.225 6 H -0.175 1.175 7 C -0.367 4.367 8 H 0.069 0.931 9 N -0.399 5.399 10 C 0.037 3.963 11 C -0.111 4.111 12 H 0.104 0.896 13 C -0.149 4.149 14 C -0.152 4.152 15 C -0.146 4.146 16 C -0.161 4.161 17 C 0.057 3.943 18 H 0.081 0.919 19 N -0.360 5.360 20 C 0.298 3.702 21 O -0.451 6.451 22 C -0.035 4.035 23 O -0.308 6.308 24 C 0.029 3.971 25 C -0.153 4.153 26 C -0.148 4.148 27 C -0.161 4.161 28 C -0.152 4.152 29 C -0.182 4.182 30 H 0.067 0.933 31 H 0.202 0.798 32 H 0.048 0.952 33 H 0.023 0.977 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.249 0.751 43 H 0.129 0.871 44 H 0.112 0.888 45 H 0.099 0.901 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.095 0.905 50 H 0.096 0.904 51 H 0.074 0.926 52 H 0.086 0.914 53 H 0.093 0.907 54 H 0.072 0.928 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 20.220 -16.974 -11.324 28.727 hybrid contribution -0.762 1.251 0.077 1.467 sum 19.459 -15.723 -11.248 27.429 Atomic orbital electron populations 1.69895 1.07283 1.26767 1.59614 1.25551 0.96142 1.01439 1.02492 0.85378 0.78614 0.79227 0.78396 1.19789 1.22476 1.17504 1.19004 0.82855 0.93304 1.41512 0.93113 1.42659 1.02299 1.04062 1.90870 1.20737 0.90600 0.87261 0.97727 1.21531 0.93039 0.96110 1.00463 0.89650 1.21552 0.96902 1.00419 0.96022 1.21545 0.93399 0.97514 1.02719 1.21455 1.00215 0.96192 0.96778 1.21844 0.93764 1.00711 0.99752 1.20771 0.95173 0.89037 0.89295 0.91905 1.45910 1.67723 1.05059 1.17287 1.20779 0.76949 0.83107 0.89369 1.90693 1.47434 1.75537 1.31459 1.22359 1.03344 0.82561 0.95272 1.88017 1.88572 1.14184 1.39980 1.22367 0.94592 0.89664 0.90502 1.21597 0.99232 0.94559 0.99957 1.21494 0.96638 0.98542 0.98146 1.21595 0.94766 0.97506 1.02210 1.21490 1.00021 0.95485 0.98164 1.22062 0.96286 0.99949 0.99924 0.93309 0.79815 0.95151 0.97665 0.92566 0.91098 0.91745 0.90490 0.90754 0.91565 0.90334 0.92618 0.75059 0.87053 0.88827 0.90077 0.92646 0.91350 0.90671 0.90517 0.90440 0.92588 0.91409 0.90744 0.92821 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.37 13.97 21.65 0.30 -63.07 16 2 C -0.06 -3.82 5.50 84.86 0.47 -3.36 16 3 Si 0.96 44.73 27.74 68.60 1.90 46.64 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.25 -10.48 6.52 99.48 0.65 -9.83 16 7 C -0.24 -13.50 10.47 84.03 0.88 -12.62 16 8 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 9 N -0.75 -34.43 5.13 -343.47 -1.76 -36.19 16 10 C 0.16 6.06 5.42 86.38 0.47 6.53 16 11 C -0.09 -2.50 2.02 -10.79 -0.02 -2.52 16 12 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 13 C -0.11 -2.53 4.90 30.59 0.15 -2.38 16 14 C -0.11 -1.98 5.92 30.59 0.18 -1.79 16 15 C -0.11 -1.77 5.77 30.59 0.18 -1.59 16 16 C -0.12 -2.53 5.60 30.59 0.17 -2.36 16 17 C 0.16 4.09 2.23 45.00 0.10 4.19 16 18 H 0.06 1.94 7.58 -2.39 -0.02 1.93 16 19 N -0.71 -15.97 3.62 -442.53 -1.60 -17.57 16 20 C 0.51 13.62 7.87 87.66 0.69 14.31 16 21 O -0.57 -20.88 16.16 16.00 0.26 -20.62 16 22 C 0.04 0.87 6.23 71.24 0.44 1.31 16 23 O -0.39 -9.55 9.52 -129.94 -1.24 -10.79 16 24 C 0.09 1.49 2.61 30.59 0.08 1.57 16 25 C -0.12 -1.83 5.57 30.60 0.17 -1.66 16 26 C -0.11 -1.20 5.92 30.60 0.18 -1.02 16 27 C -0.12 -1.38 5.92 30.59 0.18 -1.20 16 28 C -0.11 -1.43 5.92 30.59 0.18 -1.25 16 29 C -0.14 -2.48 5.54 30.59 0.17 -2.31 16 30 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 31 H 0.37 15.78 4.71 -92.71 -0.44 15.34 16 32 H 0.03 1.11 7.61 -2.39 -0.02 1.10 16 33 H 0.01 0.22 8.14 -2.38 -0.02 0.20 16 34 H 0.06 1.49 7.18 -2.39 -0.02 1.48 16 35 H 0.07 1.44 6.51 -2.39 -0.02 1.42 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 1.01 7.60 -2.38 -0.02 1.00 16 40 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.41 7.46 6.67 -92.71 -0.62 6.84 16 43 H 0.11 1.40 8.08 -2.39 -0.02 1.38 16 44 H 0.09 1.58 7.87 -2.39 -0.02 1.56 16 45 H 0.08 1.05 7.79 -2.39 -0.02 1.03 16 46 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 52 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 54 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 55 H 0.06 1.08 7.87 -2.39 -0.02 1.06 16 Total: -1.00 -76.52 416.41 2.27 -74.25 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: -0.26 Total: 33.50 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 4.67 Total: -6.15 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -3.06 Total: -116.83 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.98 Total: -31.40 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.90 Total: 46.64 kcal Total: -76.52 2.27 -74.25 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733075700.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.792 kcal (2) G-P(sol) polarization free energy of solvation -76.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds